| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004B14 | Sequence | 481 | 005888 (3) | 751 | 005364 (3) | ref|XP_009770111.1| | 8e-86 | PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Nicotiana | |||
| JMFF009D24 | Sequence | 575 | 005888 (3) | ref|XP_009770111.1| | 1e-49 | PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Nicotiana | 790 | 005364 (3) | ref|XP_009770111.1| | 6e-93 | PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Nicotiana |
| JMFF011G21 | Sequence | 513 | 005888 (3) | ref|XP_009770111.1| | 3e-30 | PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Nicotiana | 724 | 005364 (3) | ref|XP_009770111.1| | 4e-71 | PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Nicotiana |
This contig is upended
. : . : . : . : . : . :
rJMFF009D24+ TTATAGTTTGGGATANCCCAGATGGT
____________________________________________________________
consensus TTATAGTTTGGGATANCCCAGATGGT
. : . : . : . : . : . :
rJMFF009D24+ ATGCTGGTAGACTCTAGAAGTGGAAAGGTTGTTGCACCTCTGTGTGGACACTTGGACTTC
rJMFF004B14+ GGAAAGGTTGTTGCACCTCTGTGTGGACACTTGGACTTC
rJMFF011G21+ CTTC
____________________________________________________________
consensus ATGCTGGTAGACTCTAGAAGTGGAAAGGTTGTTGCACCTCTGTGTGGACACTTGGACTTC
. : . : . : . : . : . :
rJMFF009D24+ TCGTTTGCATCATCGTGGCAT-CCCGATGGTTTTACATTTGCTACCGGAAACCAGGACAA
rJMFF004B14+ TCGTTTGCATCATCGTGGCAT-CCCGATGGTTTTACATTTGCTACCGGAAACCAGGACAA
rJMFF011G21+ TCGTTTGCATCATCGTGGCATCCCCGATGGTTTTACATTTGCTACCGGAAACCAGGACAA
____________________________________________________________
consensus TCGTTTGCATCATCGTGGCAT-CCCGATGGTTTTACATTTGCTACCGGAAACCAGGACAA
. : . : . : . : . : . :
rJMFF009D24+ AACCTGTAGAGTTTGGGACGTACGCAACTTGTCAAAGTCAGTGACTGCTTTGAAGGGTAA
rJMFF004B14+ AACCTGTAGAGTTTGGGACGTACGCAACTTGTCAAAGTCAGTGACTGCTTTGAAGGGTAA
rJMFF011G21+ AACCTGTAGAGTTTGGGACGTACGCAACTTGTCAAAGTCAGTGACTGCTTTGAAGGGTAA
____________________________________________________________
consensus AACCTGTAGAGTTTGGGACGTACGCAACTTGTCAAAGTCAGTGACTGCTTTGAAGGGTAA
. : . : . : . : . : . :
rJMFF009D24+ CCTGGGAGCCATTCGGTCTATTCGCTACTCATCGGATGGAAGATTTATGGCCATGGCAGA
rJMFF004B14+ CCTGGGAGCCATTCGGTCTATTCGCTACTCATCGGATGGAAGATTTATGGCCATGGCAGA
rJMFF011G21+ CCTGGGAGCCATTCGGTCTATTCGCTACTCATCGGATGGAAGATTTATGGCCATGGCAGA
____________________________________________________________
consensus CCTGGGAGCCATTCGGTCTATTCGCTACTCATCGGATGGAAGATTTATGGCCATGGCAGA
. : . : . : . : . : . :
rJMFF009D24+ GCCTGCAGACTTCGTCCATGTTTTTGACGTGAAAAGCGGGTATAGCAAGGAACAAGAAAT
rJMFF004B14+ GCCTGCAGACTTCGTCCATGTTTTTGACGTGAAAAGCGGGTATAGCAAGGAACAAGAAAT
rJMFF011G21+ GCCTGCAGACTTCGTCCATGTTTTTGACGTGAAAAGCGGGTATAGCAAGGAACAAGAAAT
____________________________________________________________
consensus GCCTGCAGACTTCGTCCATGTTTTTGACGTGAAAAGCGGGTATAGCAAGGAACAAGAAAT
. : . : . : . : . : . :
rJMFF009D24+ CGACTTCTTTGGGGAGATATCAGGGATGTCATTCAGTCCGGACACGGAGTCCCTTTTCGT
rJMFF004B14+ CGACTTCTTTGGGGAGATATCAGGGATGTCATTCAGTCCGGACACGGAGTCCCTTTTCGT
rJMFF011G21+ CGACTTCTTTGGGGAGATATCAGGGATGTCATTCAGTCCGGACACGGAGTCCCTTTTCGT
____________________________________________________________
consensus CGACTTCTTTGGGGAGATATCAGGGATGTCATTCAGTCCGGACACGGAGTCCCTTTTCGT
. : . : . : . : . : . :
rJMFF009D24+ TGGGATTTGGGATCGAACATATGGTAGCCTTTTGGAGCTTGGACGGCGTCACAACTACTC
rJMFF004B14+ TGGGATTTGGGATCGAACATATGGTAGCCTTTTGGAGCTTGGACGGCGTCACAACTACTC
rJMFF011G21+ TGGGATTTGGGATCGAACATATGGTAGCCTTTTGGAGCTTGGACGGCGTCACAACTACTC
____________________________________________________________
consensus TGGGATTTGGGATCGAACATATGGTAGCCTTTTGGAGCTTGGACGGCGTCACAACTACTC
. : . : . : . : . : . :
rJMFF009D24+ ATACCTTGATACCTTTATCTAAAATTCACTCCCATTGGTGTGAAGCGTTTGAGTGTTCCG
rJMFF004B14+ ATACCTTGATACCTTTATCTAAAATTCACTCCCATTGGTGTGAAGCGTTTGAGTGTTCCG
rJMFF011G21+ ATACCTTGATACCTTTATCTAAAATTCACTCCCATTGGTGTGAAGCGTTTGAGTGTTCCG
____________________________________________________________
consensus ATACCTTGATACCTTTATCTAAAATTCACTCCCATTGGTGTGAAGCGTTTGAGTGTTCCG
. : . : . : . : . : . :
rJMFF009D24+ CCTATTGGTGCAACTGTGTAAAGCAGTAGCCTAGTACGCACCACTAGGGGAATGAGGTGT
rJMFF004B14+ CCTATTGGTGCAACTGTGTAAAGCAGTAGCCTAGTACGCACCACTAGGGGAATGAGGTGT
rJMFF011G21+ CCTATTGGTGCAACTGTGTAAAGCAGTAGCCTAGTACGCACCACTAGGGGAATGAGGTGT
____________________________________________________________
consensus CCTATTGGTGCAACTGTGTAAAGCAGTAGCCTAGTACGCACCACTAGGGGAATGAGGTGT
. : . : . : . : . : . :
rJMFF009D24+ AAAATGTTTTATGTTGTGCTATGTTGGCTGGTCTTTCAAATTGATTGTGACATTTGTCAT
rJMFF004B14+ AAAATGTTTTATGTTGTGCTATGTTGGCTGGTCTTTCAAATTGATTGTGACATTTGTCAT
rJMFF011G21+ AAAATGTTTTATGTTGTGCTATGTTGGCTGGTCTTTCAAATTGATTGTGACATTTGTCAT
____________________________________________________________
consensus AAAATGTTTTATGTTGTGCTATGTTGGCTGGTCTTTCAAATTGATTGTGACATTTGTCAT
. : . : . : . : . : . :
rJMFF009D24+ AAATGTAGAATGGAGGAATGAATATGTATAGAAGGCTAGAGAAACTCCAGTCAGTGATAT
rJMFF004B14+ AAATGTAGAATGGAGGAATGAATATGTATAGAAGGCTAGAGAAACTCCAGTCAGTGATAT
rJMFF011G21+ AAATGTAGAATGGAGGAATGAATATGTATAGAAGGCTAGAGAAACTCCAGTCAGTGATAT
____________________________________________________________
consensus AAATGTAGAATGGAGGAATGAATATGTATAGAAGGCTAGAGAAACTCCAGTCAGTGATAT
. : . : . : . : . : . :
rJMFF009D24+ GGACATGAACAAAACAAGTAGAGTGAGGGGGGGCTGGGAATGGGACTGGGATTTCTCACT
rJMFF004B14+ GGACATGAACAAAACAAGTAGAGTGAGGGGGGGCTGGGAATGGGACTGGGATTTCTCACT
rJMFF011G21+ GGACATGAACAAAACAAGTAGAGTGAGGGGGGGCTGGGAATGGGACTGGGATTTCTCACT
____________________________________________________________
consensus GGACATGAACAAAACAAGTAGAGTGAGGGGGGGCTGGGAATGGGACTGGGATTTCTCACT
. : . : . : . : . : . :
rJMFF009D24+ TTGTTTCTGGGACTCCAAAACCTTTCTTCAGAGTTGCTCTGCATT
rJMFF004B14+ TTGTTTCTGGGACTCCAAAACCTTTCTTCAGAGTTGCTCTGCATTTATATCAA
rJMFF011G21+ TTGTTTCTGGGACTCCAAAACCTTTCTTCAGAGTTGCTCTGCATTTATATCAATAACTCA
____________________________________________________________
consensus TTGTTTCTGGGACTCCAAAACCTTTCTTCAGAGTTGCTCTGCATTTATATCAATAACTCA