Contig 005361:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011A06Sequence587005361 (3)ref|XP_003593909.1|2e-24hypothetical protein MTR_2g019240 [Medicago truncatula] gb|AES64160.1| transmemb612005361 (3)ref|XP_003593909.1|2e-24hypothetical protein MTR_2g019240 [Medicago truncatula] gb|AES64160.1| transmemb
JMFN038I08Sequence563005361 (3)ref|XP_003593909.1|1e-24hypothetical protein MTR_2g019240 [Medicago truncatula] gb|AES64160.1| transmemb

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN038I08+ AATGCTTCAATCAACAATCATAAGCTTTCAAACAGACTAAGCTAAAGT
                      ____________________________________________________________
consensus AATGCTTCAATCAACAATCATAAGCTTTCAAACAGACTAAGCTAAAGT
 
. : . : . : . : . : . :
JMFN038I08+ GCTAAACTCCATATAAATATACAAAATCAGCAAACATTTTCACCAAAGGTAGAAAGAAAA
JMFF011A06+ TTTCACCAAAGGTAGAAAGAAAA
rJMFF011A06- AAA
                      ____________________________________________________________
consensus GCTAAACTCCATATAAATATACAAAATCAGCAAACATTTTCACCAAAGGTAGAAAGAAAA
 
. : . : . : . : . : . :
JMFN038I08+ TCCATGAAAAAATAAAAGAAATATCAATTCCCTCACATTCAATTCCCAGTTTTGTACAGA
JMFF011A06+ TCCATGAAAAAATAAAAGAAATATCAATTCCCTCACATTCAATTCCCAGTTTTGTACAGA
rJMFF011A06- TCCATGAAAAAATAAAAGAAATATCAATTCCCTCACATTCAATTCCCAGTTTTGTACAGA
                      ____________________________________________________________
consensus TCCATGAAAAAATAAAAGAAATATCAATTCCCTCACATTCAATTCCCAGTTTTGTACAGA
 
. : . : . : . : . : . :
JMFN038I08+ AATGCAGAATAAAAGCGGTATAAGATAACATCGATACCAAGTAATTTATCTTTTAACAGT
JMFF011A06+ AATGCAGAATAAAAGCGGTATAAGATAACATCGATACCAAGTAATTTATCTTTTAACAGT
rJMFF011A06- AATGCAGAATAAAAGCGGTATAAGATAACATCGATACCAAGTAATTTATCTTTTAACAGT
                      ____________________________________________________________
consensus AATGCAGAATAAAAGCGGTATAAGATAACATCGATACCAAGTAATTTATCTTTTAACAGT
 
. : . : . : . : . : . :
JMFN038I08+ AGGGATTGTGAAAAGAACCGGCGATCGGGTTTGCTAATGGCGTAGAATTTCGAGGATCAA
JMFF011A06+ AGGGATTGTGAAAAGAACCGGCGATCGGGTTTGCTAATGGCGTAGAATTTCGAGGATCAA
rJMFF011A06- AGGGATTGTGAAAAGAACCGGCGATCGGGTTTGCTAATGGCGTAGAATTTCGAGGATCAA
                      ____________________________________________________________
consensus AGGGATTGTGAAAAGAACCGGCGATCGGGTTTGCTAATGGCGTAGAATTTCGAGGATCAA
 
. : . : . : . : . : . :
JMFN038I08+ ACGGCTTTGACGACAGGAGAGGCGGCGGAGTAGTAGGCTTCGGCCGGTGTGGGATCCGGG
JMFF011A06+ ACGGCTTTGACGACAGGAGAGGCGGCGGAGTAGTAGGCTTCGGCCGGTGTGGGATCCGGG
rJMFF011A06- ACGGCTTTGACGACAGGAGAGGCGGCGGAGTAGTAGGCTTCGGCCGGTGTGGGATCCGGG
                      ____________________________________________________________
consensus ACGGCTTTGACGACAGGAGAGGCGGCGGAGTAGTAGGCTTCGGCCGGTGTGGGATCCGGG
 
. : . : . : . : . : . :
JMFN038I08+ TTGAGAGGGACCCGAGCGTCGTGATCGTCCGGGTCGTAATCCGGGTTGAGGTTGCGATCC
JMFF011A06+ TTGAGAGGGACCCGAGCGTCGTGATCGTCCGGGTCGTAATCCGGGTTGAGGTTGCGATCC
rJMFF011A06- TTGAGAGGGACCCGAGCGTCGTGATCGTCCGGGTCGTAATCCGGGTTGAGGTTGCGATCC
                      ____________________________________________________________
consensus TTGAGAGGGACCCGAGCGTCGTGATCGTCCGGGTCGTAATCCGGGTTGAGGTTGCGATCC
 
. : . : . : . : . : . :
JMFN038I08+ ACGGCTTCCCGGCCCTTCTCCAGGCAAGGCTTGCAGGCCATCTCGATGGTGATCCACCCA
JMFF011A06+ ACGGCTTCCCGGCCCTTCTCCAGGCAAGGCTTGCAGGCCATCTCGATGGTGATCCACCCA
rJMFF011A06- ACGGCTTCCCGGCCCTTCTCCAGGCAAGGCTTGCAGGCCATCTCGATGGTGATCCACCCA
                      ____________________________________________________________
consensus ACGGCTTCCCGGCCCTTCTCCAGGCAAGGCTTGCAGGCCATCTCGATGGTGATCCACCCA
 
. : . : . : . : . : . :
JMFN038I08+ AGTATTACCCCCGCTATTGCTATTAAGGATGCTGTCAACGCCCCCATTTCTCTTCTCTCT
JMFF011A06+ AGTATTACCCCCGCTATTGCTATTAAGGATGCTGTCAACGCCCCCATTTCTCTTCTCTCT
rJMFF011A06- AGTATTACCCCCGCTATTGCTATTAAGGATGCTGTCAACGCCCCCATTTCTCTTCTCTCT
                      ____________________________________________________________
consensus AGTATTACCCCCGCTATTGCTATTAAGGATGCTGTCAACGCCCCCATTTCTCTTCTCTCT
 
. : . : . : . : . : . :
JMFN038I08+ TCTCTCTTCGCTTCTCACTTCTCTCTGT
JMFF011A06+ TCTCTCTTCGCTTCTCACTTCTCTCTGTTGTAATAGACCCAAACGAAGATGGTGATGAGG
rJMFF011A06- TCTCTCTTCGCTTCTCACTTCTCTCTGTTGTAATAGACCCAAACGAAGATGGTGATGAGG
                      ____________________________________________________________
consensus TCTCTCTTCGCTTCTCACTTCTCTCTGTTGTAATAGACCCAAACGAAGATGGTGATGAGG
 
. : . : . : . : . : . :
JMFF011A06+ GTGAAGAAGGCTATTCAGCTCTCTAGAAGACTAGAAGAAAAATCTTTTGTTTTGTACACC
rJMFF011A06- GTGAAGAAGGCTATTCAGCTCTCTAGAAGACTAGAAGAAAAATCTTTTGTTTTGTACACC
                      ____________________________________________________________
consensus GTGAAGAAGGCTATTCAGCTCTCTAGAAGACTAGAAGAAAAATCTTTTGTTTTGTACACC
 
. : . : . : . : . : . :
JMFF011A06+ GTATAAGTTTGCAGCCTCAACATT
rJMFF011A06- GTATAAGTTTGCAGCCTCAACATTCGGTTCTCGAGTCATCGCTGTTCCAGATAGCGATGA
                      ____________________________________________________________
consensus GTATAAGTTTGCAGCCTCAACATTCGGTTCTCGAGTCATCGCTGTTCCAGATAGCGATGA