| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010B07 | Sequence | 571 | 010631 (3) | emb|CDP13813.1| | 6e-33 | unnamed protein product [Coffea canephora] | 638 | 005355 (3) | ref|XP_009599597.1| | 3e-53 | PREDICTED: rab3 GTPase-activating protein catalytic subunit [Nicotiana tomentos |
| JMFF031P20 | Sequence | 600 | 010631 (3) | emb|CDP13813.1| | 3e-35 | unnamed protein product [Coffea canephora] | 649 | 005355 (3) | ref|XP_009599597.1| | 4e-54 | PREDICTED: rab3 GTPase-activating protein catalytic subunit [Nicotiana tomentos |
| JMSF014D06 | Sequence | 511 | 010631 (3) | emb|CDP13813.1| | 2e-23 | unnamed protein product [Coffea canephora] | 789 | 005355 (3) | ref|XP_009599597.1| | 2e-83 | PREDICTED: rab3 GTPase-activating protein catalytic subunit [Nicotiana tomentos |
This contig is upended
. : . : . : . : . : . :
rJMSF014D06+ AAGGCGGCAANCCCTNGTTGTATATTAGAGGATTTTGTGAGATGGCATTC
____________________________________________________________
consensus AAGGCGGCAANCCCTNGTTGTATATTAGAGGATTTTGTGAGATGGCATTC
. : . : . : . : . : . :
rJMSF014D06+ TCCTCCAGACTGGATGGAAAATGAGAGTAGTGAATCTAATGTAACATCTGAAAGCAGCGA
____________________________________________________________
consensus TCCTCCAGACTGGATGGAAAATGAGAGTAGTGAATCTAATGTAACATCTGAAAGCAGCGA
. : . : . : . : . : . :
rJMSF014D06+ TTCATCTGTGAGAGGCCAACTGAGTAGTCGGATGCAGAAAGAAGGTAATTTGTGGCGTGA
____________________________________________________________
consensus TTCATCTGTGAGAGGCCAACTGAGTAGTCGGATGCAGAAAGAAGGTAATTTGTGGCGTGA
. : . : . : . : . : . :
rJMSF014D06+ ATTGTGGGAAACCTCAAAACCAATACCAGCTGTCAGACAAACCCCCCTCTATGATGAGGA
rJMFF031P20+ CCAATACCAGCTGTCAGACAAACCCCCCTCTATGATGAGGA
rJMFF010B07+ CCAGCTGTCAGACAAACCCCCCTCTATGATGAGGA
____________________________________________________________
consensus ATTGTGGGAAACCTCAAAACCAATACCAGCTGTCAGACAAACCCCCCTCTATGATGAGGA
. : . : . : . : . : . :
rJMSF014D06+ TTTGGCTATGGAAGGTATTCTGGATGCCTTAGAAGATATCTCGCCATCCATGCTGTTTGA
rJMFF031P20+ TTTGGCTGTGGAAGGTATTCTGGATGCCTTAGAAGATATCTCGCCATCCATGCTGTTTGA
rJMFF010B07+ TTTGGCTGTGGAAGGTATTCTGGATGCCTTAGAAGATATCTCGCCATCCATGCTGTTTGA
____________________________________________________________
consensus TTTGGCTGTGGAAGGTATTCTGGATGCCTTAGAAGATATCTCGCCATCCATGCTGTTTGA
. : . : . : . : . : . :
rJMSF014D06+ ACAACTATTTATATCCCTTGTCGGTTCAGGATTTGTGATTGCTGAGTCAACCCTCTCCCC
rJMFF031P20+ ACAACTATTTATATCCCTTGTCGGTTCAGGATTTGTGATTGCTGAGTCAACCCTCTCCCC
rJMFF010B07+ ACAACTATTTATATCCCTTGTCGGTTCAGGATTTGTGATTGCTGAGTCAACCCTCTCCCC
____________________________________________________________
consensus ACAACTATTTATATCCCTTGTCGGTTCAGGATTTGTGATTGCTGAGTCAACCCTCTCCCC
. : . : . : . : . : . :
rJMSF014D06+ CAATCCCAGCATGTCAGGGCTGTTTTTTGAGTGCAAAGATTACACAATTTTAATATGCCA
rJMFF031P20+ CAATCCCAGCATGTCAGGGCTGTTTTTTGAGTGCAAAGATTACACAATTTTAATATGCCA
rJMFF010B07+ CAATCCCAGCATGTCAGGGCTGTTTTTTGAGTGCAAAGATTACACAATTTTAATATGCCA
____________________________________________________________
consensus CAATCCCAGCATGTCAGGGCTGTTTTTTGAGTGCAAAGATTACACAATTTTAATATGCCA
. : . : . : . : . : . :
rJMSF014D06+ AAACAGCGCATGGGTTAAGAAAGTTGATGACATATGTCAGGTGTATGAAACGGTGGAGAC
rJMFF031P20+ AAACAGCGCATGGGTTAAGAAAGTTGATGACATATGTCAGGTGTATGAAACGGTGGAGAC
rJMFF010B07+ AAACAGCGCATGGGTTAAGAAAGTTGATGACATATGTCAGGTGTATGAAACGGTGGAGAC
____________________________________________________________
consensus AAACAGCGCATGGGTTAAGAAAGTTGATGACATATGTCAGGTGTATGAAACGGTGGAGAC
. : . : . : . : . : . :
rJMSF014D06+ GATGGTACTTAGCCCGGATGGAGTTGGTAAATTCGCAGTTCAGAATGAAGAGAACACTCC
rJMFF031P20+ GATGGTACTTAGCCCGGATGGAGTTGGTAAATTCGCAGTTCAGAATGAAGAGAACACTCC
rJMFF010B07+ GATGGTACTTAGCCCGGATGGAGTTGGTAAATTCGCAGTTCAGAATGAAGAGAACACTCC
____________________________________________________________
consensus GATGGTACTTAGCCCGGATGGAGTTGGTAAATTCGCAGTTCAGAATGAAGAGAACACTCC
. : . : . : . : . : . :
rJMSF014D06+ TGTGAGTGAACTGAAAAGCCGCTTCAAGAGACTAGGGTCGTCGGTGTTTGGCAGGGATAA
rJMFF031P20+ TGTGAGTGAACTGAAAAGCCGCTTCAAGAGACTAGGGTCGTCGGTGTTTGGCAGGGATAA
rJMFF010B07+ TGTGAGTGAACTGAAAAGCCGCTTCAAGAGACTAGGGTCGTCGGTGTTTGGCAGGGATAA
____________________________________________________________
consensus TGTGAGTGAACTGAAAAGCCGCTTCAAGAGACTAGGGTCGTCGGTGTTTGGCAGGGATAA
. : . : . : . : . : . :
rJMSF014D06+ GAATTCAGGAAAAGGATCCCCAACAAACTCAGAGGAGAACCTTATAAAGCAATCAATCTC
rJMFF031P20+ GAATTCAGGAAAAGGATCCCCAACAAACTCAGAGGAGAACCTTATAAAGCAATCAATCTC
rJMFF010B07+ GAATTCAGGAAAAGGATCCCCAACAAACTCAGAGGAGAACCTTATAAAGCAATCAATCTC
____________________________________________________________
consensus GAATTCAGGAAAAGGATCCCCAACAAACTCAGAGGAGAACCTTATAAAGCAATCAATCTC
. : . : . : . : . : . :
rJMSF014D06+ ATCCATATTCTCAAAGAAGCCACCTAAACACAGCAGCACAAATCCGGGTGATAATAAGTT
rJMFF031P20+ ATCCATATTCTCAAAGAAGCCACCTAAACACAGCAGCACAAATCCGGGTGATAATAAGTT
rJMFF010B07+ ATCCATATTCTCAAAGAAGCCACCTAAACACAGCAGCACAAATCCGGGTGATAATAAGTT
____________________________________________________________
consensus ATCCATATTCTCAAAGAAGCCACCTAAACACAGCAGCACAAATCCGGGTGATAATAAGTT
. : . : . : . : . : . :
rJMSF014D06+ TTCCAGTCCTGTTGATAATGACTGGACTATTGTATAACAAACACCCTTCTCATCCAAAGG
rJMFF031P20+ TTCCAGTCCTGTTGATAATGACTGGACTATTGTATAACAAACACCCTTCTCATCCAAAGG
rJMFF010B07+ TTCCAGTCCTGTTGATAATGACTGGACTATTGTATAACAAACACCCTTCTCATCCAAAGG
____________________________________________________________
consensus TTCCAGTCCTGTTGATAATGACTGGACTATTGTATAACAAACACCCTTCTCATCCAAAGG
. : . : . : . : . : . :
rJMSF014D06+ TGCAACTGTAAATTTATTT
rJMFF031P20+ TGCAACTGTAAATTTATTTGTGTGAACTATGAACCAGTAAAAGCAATACCAAAATCA
rJMFF010B07+ TGCAACTGTAAATTTATTTGTGTGAACTATGAACCAGTAAAAGCAATACCAAAATCATAG
____________________________________________________________
consensus TGCAACTGTAAATTTATTTGTGTGAACTATGAACCAGTAAAAGCAATACCAAAATCATAG