Contig 005352:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF009H20-                                            TTAATACATGTTGTTTACTGCAAAAC
                      ____________________________________________________________
consensus                                               TTAATACATGTTGTTTACTGCAAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038K20+                  TAAATATCAAATGTCAAATGTCAAATGATACTGCCACTCACAAACAAAATGTC
rJMFF009H20-          TAAACCCTAAATATCAAATGTCAAATGTCAAATGATACTGCCACTCACAAACAAAATGTC
                      ____________________________________________________________
consensus             TAAACCCTAAATATCAAATGTCAAATGTCAAATGATACTGCCACTCACAAACAAAATGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038K20+           CTTCAAATCTTTAATACACACGGCCAATAACAAACAGAACGTAACACAGTACAAAACCAG
JMFF009H20+                                                            TACAAAACCAG
rJMFF009H20-          CTTCAAATCTTTAATACACACGGCCAATAACAAACAGAACGTAACACAGTACAAAACCAG
                      ____________________________________________________________
consensus             CTTCAAATCTTTAATACACACGGCCAATAACAAACAGAACGTAACACAGTACAAAACCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038K20+           CATATATTTAGAAACAGTCTAATACCAAGTTTAAACAAATTAACAAGTGATGAACAAACA
JMFF009H20+           CATATATTTAGAAACAGTCTAATACCAAGTTTAAACAAATTAACAAGTGATGAACAAACA
rJMFF009H20-          CATATATTTAGAAACAGTCTAATACCAAGTTTAAACAAATTAACAAGTGATGAACAAACA
                      ____________________________________________________________
consensus             CATATATTTAGAAACAGTCTAATACCAAGTTTAAACAAATTAACAAGTGATGAACAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038K20+           ATCAAACGCAGTGGACTGACTCGGCGTCGACGGACTGGGCGTAGATCTGAGACGTCACCA
JMFF009H20+           ATCAAACGCAGTGGACTGACTCGGCGTCGACGGACTGGGCGTAGATCTGAGACGTCACCA
rJMFF009H20-          ATCAAACGCAGTGGACTGACTCGGCGTCGACGGACTGGGCGTAGATCTGAGACGTCACCA
                      ____________________________________________________________
consensus             ATCAAACGCAGTGGACTGACTCGGCGTCGACGGACTGGGCGTAGATCTGAGACGTCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038K20+           GCGAGAAATTTCAGCAGAAGCAGAGGTAAGGTGGTGTCGGAGACGGAGAGAGGCCGAGAC
JMFF009H20+           GCGAGAAATTTCAGCAGAAGCAGAGGTAAGGTGGTGTCGGAGACGGAGAGAGGCCGAGAC
rJMFF009H20-          GCGAGAAATTTCAGCAGAAGCAGAGGTAAGGTGGTGTCGGAGACGGAGAGAGGCCGAGAC
                      ____________________________________________________________
consensus             GCGAGAAATTTCAGCAGAAGCAGAGGTAAGGTGGTGTCGGAGACGGAGAGAGGCCGAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038K20+           TCCGAGAGGGCTGAGGGCGGTGATGCGTAGCAACGTAGACTCGTAGAGCCGTAGTCCATA
JMFF009H20+           TCCGAGAGGGCTGAGGGCGGTGATGCGTAGCAACGTAGACTCGTAGAGCCGTAGTCCATA
rJMFF009H20-          TCCGAGAGGGCTGAGGGCGGTGATGCGTAGCAACGTAGACTCGTAGAGCCGTAGTCCATA
                      ____________________________________________________________
consensus             TCCGAGAGGGCTGAGGGCGGTGATGCGTAGCAACGTAGACTCGTAGAGCCGTAGTCCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038K20+           GAGGATTGGAGTGAAACTGACGAACTTTGGAGCAGTGGAACAGTGGAAGACAAGTGTGGA
JMFF009H20+           GAGGATTGGAGTGAAACTGACGAACTTTGGAGCAGTGGAACAGTGGAAGACAAGTGTGGA
rJMFF009H20-          GAGGATTGGAGTGAAACTGACGAACTTTGGAGCAGTGGAACAGTGGAAGACAAGTGTGGA
                      ____________________________________________________________
consensus             GAGGATTGGAGTGAAACTGACGAACTTTGGAGCAGTGGAACAGTGGAAGACAAGTGTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038K20+           GAAGTGGAGTACTGTGGTCTGTGGAAGACGAGAGCGATAGTGCGAGACATCGAGTAGAGT
JMFF009H20+           GAAGTGGAGTACTGTGGTCTGTGGAAGACGAGAGCGATAGTGCGAGACATCGAGTAGAGT
rJMFF009H20-          GAAGTGGAGTACTGTGGTCTGTGGAAGACGAGAGCGATAGTGCGAGACATCGAGTAGAGT
                      ____________________________________________________________
consensus             GAAGTGGAGTACTGTGGTCTGTGGAAGACGAGAGCGATAGTGCGAGACATCGAGTAGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038K20+           AGAATGTTTGAAGGCTTCTGGGTGCTGTAGGTGGAACTGGAGAAGATGAGTGGAAGTGTG
JMFF009H20+           AGAATGTTTGAAGGCTTCTGGGTGCTGTAGGTGGAACTGGAGAAGATGAGTGGAAGTGTG
rJMFF009H20-          AGAATGTTTGAAGGCTTCTGGGTGCTGTAGGTGGAACTGGAGAAGATGAGTGGAAGTGTG
                      ____________________________________________________________
consensus             AGAATGTTTGAAGGCTTCTGGGTGCTGTAGGTGGAACTGGAGAAGATGAGTGGAAGTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038K20+           GAACAGTGGAAGTCGTGGTCTCGTGGTCTGTCGTGGAACTGTGGATGGCTGATGCACCGA
JMFF009H20+           GAACAGTGGAAGTCGTGGTCTCGTGGTCTGTCGTGGAACTGTGGATGGCTGATGCACCGA
rJMFF009H20-          GAACAGTGGAAGTCGTGGTCTCGTGGTCTGTCGTGGAACTGTGGATGGCTGATGCACCGA
                      ____________________________________________________________
consensus             GAACAGTGGAAGTCGTGGTCTCGTGGTCTGTCGTGGAACTGTGGATGGCTGATGCACCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038K20+           TTCCACGAAGCGGAGAAGACAAGGCGAGATTGC                           
JMFF009H20+           TTCCACGAAGCGGAGAAGACAAGGCGAGATTGCGATTTGCGAGAAGGTGAAGACTGAAGT
rJMFF009H20-          TTCCACGAAGCGGAGAAGACAAGGCGAGATTGCGATTTGCGAGAAGGTGAAGACTGAAGT
                      ____________________________________________________________
consensus             TTCCACGAAGCGGAGAAGACAAGGCGAGATTGCGATTTGCGAGAAGGTGAAGACTGAAGT