Contig 005349:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF047O20-           GAGTTTTCTAGTCGTCTACTATTCACACTTCATCGTCTTTACCTCGATCACCACCTCATT
JMFF008I07-                                   ACACTTCATCGTCTTTACCTCGATCACCACCTCATT
                      ____________________________________________________________
consensus             GAGTTTTCTAGTCGTCTACTATTCACACTTCATCGTCTTTACCTCGATCACCACCTCATT
 
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JMSF047O20-           CCTCTTTATCTTCGTATGCAATATTTCCAGACCACTTCACTCTCTCCCTCACCTTAACAC
JMFF008I07-           CCTCTTTATCTTCGTATGCAATATTTCCAGACCACTTCACTCTCTCCCTCACCTTAACAC
                      ____________________________________________________________
consensus             CCTCTTTATCTTCGTATGCAATATTTCCAGACCACTTCACTCTCTCCCTCACCTTAACAC
 
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JMSF047O20-           CACTTCCAGAAAAAAACAACATCATCGTAACAAAATATCAAACAGGTTATTCTTCCTTAA
JMFF008I07-           CACTTCCAGAAAAAAACAACATCATCGTAACAAAATATCAAACAGGTTATTCTTCCTTAA
                      ____________________________________________________________
consensus             CACTTCCAGAAAAAAACAACATCATCGTAACAAAATATCAAACAGGTTATTCTTCCTTAA
 
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JMSF047O20-           TTTCCACGAAAATAATGGAGGTTTTCTTTCTCATAGCTTTGTTATTGTTTACGGTTCAAA
JMFF008I07-           TTTCCACGAAAATAATGGAGGTTTTCTTTCTCATAGCTTTGTTATTGTTTACGGTTCAAA
                      ____________________________________________________________
consensus             TTTCCACGAAAATAATGGAGGTTTTCTTTCTCATAGCTTTGTTATTGTTTACGGTTCAAA
 
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JMSF047O20-           TGATGATCGAGCCGTCACGTGCCGCCATCGACACTTTCGTCTACGGCGGCTGCTCGCAGA
JMFF008I07-           TGATGATCGAGCCGTCACGTGCCGCCATCGACACTTTCGTCTACGGCGGCTGCTCGCAGA
                      ____________________________________________________________
consensus             TGATGATCGAGCCGTCACGTGCCGCCATCGACACTTTCGTCTACGGCGGCTGCTCGCAGA
 
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JMSF047O20-           TTAAGTTCACGCCGGGGACGCCGTACGAGTCGAACGTCAACTCGGTCCTCACCTCGTTCG
JMFF008I07-           TTAAGTTCACGCCGGGGACGCCGTACGAGTCGAACGTCAACTCGGTCCTCACCTCGTTCG
                      ____________________________________________________________
consensus             TTAAGTTCACGCCGGGGACGCCGTACGAGTCGAACGTCAACTCGGTCCTCACCTCGTTCG
 
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JMSF047O20-           TCAACTCAGCTGCCACCGCCAACTTCAACAACTACAAGATATCCGTGCCGGGCTCCTCCC
JMFF008I07-           TCAACTCAGCTGCCACCGCCAACTTCAACAACTACAAGATATCCGTGCCGGGCTCCTCCC
rJMSF047O20+                                                                  TCCC
                      ____________________________________________________________
consensus             TCAACTCAGCTGCCACCGCCAACTTCAACAACTACAAGATATCCGTGCCGGGCTCCTCCC
 
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JMSF047O20-           AGAGCGACATTGTTTACGGCCTTTACCAGTGCCGCGGCGATCTGGGCAGCGCGGATTGCC
JMFF008I07-           AGAGCGACATTGTTTACGGCCTTTACCAGTGCCGCGGCGATCTGGGCAGCGCGGATTGCC
rJMSF047O20+          AGAGCGACATTGTTTACGGCCTTTACCAGTGCCGCGGCGATCTGGGCAGCGCGGATTGCC
rJMFF008I07+                                                        CAGCGCGGATTGCC
                      ____________________________________________________________
consensus             AGAGCGACATTGTTTACGGCCTTTACCAGTGCCGCGGCGATCTGGGCAGCGCGGATTGCC
 
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JMSF047O20-           GGAACTGCGTGGGCCGGGCGGTGAGTCAACTCGGGATGCTGTGCGTCGACACCTCCGGCG
JMFF008I07-           GGAACTGCGTGGGCCGGGCGGTGAGTCAACTCGGGATGCTGTGCGTCGACACCTCCGGCG
rJMSF047O20+          GGAACTGCGTGGGCCGGGCGGTGAGTCAACTCGGGATGCTGTGCGTCGACACCTCCGGCG
rJMFF008I07+          GGAACTGCGTGGNCCGGGCGGTGAGTCAACTCGGGATGCTGTGCGTCGACACNTCCGGCG
                      ____________________________________________________________
consensus             GGAACTGCGTGGGCCGGGCGGTGAGTCAACTCGGGATGCTGTGCGTCGACACCTCCGGCG
 
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JMSF047O20-           GCGCGTTGCAGCTCGACGGGTGTTTCGTGAAGTACGATAACGTCTCGTTCCTCGGG    
JMFF008I07-           GCGCGTTGCAGCTCGACGGGTGTTTCGTGAAGTACGATAACGTCTCGTTCCTCGGGGCGG
rJMSF047O20+          GCGCGTTGCAGCTCGACGGGTGTTTCGTGAAGTACGATAACGTCTCGTTCCTCGGGGCGG
rJMFF008I07+          GCGCGTTGCAGCTCGACGGGTGTTTCGTGAAGTACGATAACGTCTCGTTCCTCGGGGCGG
                      ____________________________________________________________
consensus             GCGCGTTGCAGCTCGACGGGTGTTTCGTGAAGTACGATAACGTCTCGTTCCTCGGGGCGG
 
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JMFF008I07-           AGGA                                                        
rJMSF047O20+          AGGACAAGACGGTGGTGTCGCACAAGTGTGGGCCGCCGATCTCGTACGGCTCCGACGACG
rJMFF008I07+          AGGACAAGACGGTGGTGTCGCACAAGTGTGGGCCGCCGATCTCGTACGGCTCCGACGACG
                      ____________________________________________________________
consensus             AGGACAAGACGGTGGTGTCGCACAAGTGTGGGCCGCCGATCTCGTACGGCTCCGACGACG
 
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rJMSF047O20+          AGACGCGCCGGGATGCCGTGCTGTCGTATCTGACGGCCGGGGGACAGTACTTCCGGGTCG
rJMFF008I07+          AGACGCGCCGGGATGCCGTGCTGTCGTATCTGACGGCCGGGGGACAGTACTTCCGGGTCG
                      ____________________________________________________________
consensus             AGACGCGCCGGGATGCCGTGCTGTCGTATCTGACGGCCGGGGGACAGTACTTCCGGGTCG
 
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rJMSF047O20+          GTGGGTCGGGGCGGGTCCAGGGTGTGGCGCATTGCACGCAAGACCTGAGCCAAGCGGAGT
rJMFF008I07+          GTGGGTCGGGGCGGGTCCAGGGTGTGGCGCAGTGCACGCAAGACCTGAGCCAAGCGGAGT
                      ____________________________________________________________
consensus             GTGGGTCGGGGCGGGTCCAGGGTGTGGCGCATTGCACGCAAGACCTGAGCCAAGCGGAGT
 
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rJMSF047O20+          GCCAGGATTGCTTGTCGGACGCCATCGGACGGCTGAGAAACGAGTGTGGCTCCGCGCCGT
rJMFF008I07+          GCCAGGATTGCTTGTCGGACGCCATCGGACGGCTGAGAAACGAGTGTGGCTCCGCGCCGT
                      ____________________________________________________________
consensus             GCCAGGATTGCTTGTCGGACGCCATCGGACGGCTGAGAAACGAGTGTGGCTCCGCGCCGT
 
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rJMSF047O20+          GGGGAGATATGTTCCTGTCCAAGTGCTACGCGCGTTACTCGGAGCGTGGGTTCTCCTCAA
rJMFF008I07+          GGGGAGATATGTTCCTGTCCAAGTGCTACGCGCGTTACTCGGAGCGTGGGTTCTCCTCAA
                      ____________________________________________________________
consensus             GGGGAGATATGTTCCTGTCCAAGTGCTACGCGCGTTACTCGGAGCGTGGGTTCTCCTCAA
 
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rJMSF047O20+          AAAGCGATGATAACGATGAAGAAGTTGAGAGAACACTTGCAATCACAATAGGACTCATTG
rJMFF008I07+          AAAGCGATGATAACGATGAAGAAGTTGAGAGAACACTTGCAATCACAATAGGACTCATTG
                      ____________________________________________________________
consensus             AAAGCGATGATAACGATGAAGAAGTTGAGAGAACACTTGCAATCACAATAGGACTCATTG
 
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rJMSF047O20+          CTGGTGTGGCTGTACTGGTTGTTTTCCTCTCTGTTTTGAGCAAACTTTGTGAACCAAAAG
rJMFF008I07+          CTGGTGTGGCTGTACTGGTTGTTTTCCTCTCTGTTTTGAGCAAACTTTGTGAACCAAAAG
                      ____________________________________________________________
consensus             CTGGTGTGGCTGTACTGGTTGTTTTCCTCTCTGTTTTGAGCAAACTTTGTGAACCAAAAG
 
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rJMSF047O20+          GTGGAAAATAAAGAGCATTTTGTGGATATACTAGTAAAGTGTATGTTGTTGCATCCTTTG
rJMFF008I07+          GTGGAAAATAAAGAGCATTTTGTGGATATACTAGTAAAGTGTATGTTGTTGCATCCTTTG
                      ____________________________________________________________
consensus             GTGGAAAATAAAGAGCATTTTGTGGATATACTAGTAAAGTGTATGTTGTTGCATCCTTTG
 
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rJMSF047O20+          GGTAAATTGTTTTGCTTTAGGTGCTCTTTTGCTTTTGTATTAGTATTATTATTATTA   
rJMFF008I07+          GGTAAATTGTTTTGCTTTAGGTGCTCTTTTGCTTTTGTATTAGTATTATTATTATTATTG
                      ____________________________________________________________
consensus             GGTAAATTGTTTTGCTTTAGGTGCTCTTTTGCTTTTGTATTAGTATTATTATTATTATTG
 
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rJMFF008I07+          GCCTAGCTACTTTGCTCTTTTTAATGTGCTTTTTGAAGAGTTCCCCCTTAGCTTCTTGTA
                      ____________________________________________________________
consensus             GCCTAGCTACTTTGCTCTTTTTAATGTGCTTTTTGAAGAGTTCCCCCTTAGCTTCTTGTA
 
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rJMFF008I07+          TGGACTGTAAAGAGGTACATTGAAACAAGTGAAGTAATTAAAGGCTGTGAAATAACACAT
                      ____________________________________________________________
consensus             TGGACTGTAAAGAGGTACATTGAAACAAGTGAAGTAATTAAAGGCTGTGAAATAACACAT