clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF008H15 | Sequence | 622 | 000032 (14) | ref|XP_009772632.1| | 4e-95 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 769 | 005348 (9) | ref|XP_009627036.1| | 8e-111 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi |
JMFF012L24 | Sequence | 604 | 000032 (14) | ref|XP_009772632.1| | 2e-81 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 775 | 005348 (9) | ref|XP_009627036.1| | 2e-121 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi |
JMFF024J20 | Sequence | 450 | 000032 (14) | ref|XP_009772632.1| | 3e-53 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 697 | 005348 (9) | ref|XP_009627036.1| | 1e-96 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi |
JMFF031K17 | Sequence | 608 | 000032 (14) | ref|XP_009772632.1| | 6e-92 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 706 | 005348 (9) | ref|XP_009627036.1| | 2e-90 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi |
JMFF031N16 | Sequence | 505 | 000032 (14) | ref|XP_009772632.1| | 1e-63 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 745 | 005348 (9) | ref|XP_009627036.1| | 4e-93 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi |
JMFF032L17 | Sequence | 529 | 000032 (14) | ref|XP_009772632.1| | 1e-72 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 767 | 005348 (9) | ref|XP_009627036.1| | 7e-121 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi |
JMSF003P12 | Sequence | 242 | 000032 (14) | ref|XP_009772632.1| | 4e-14 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 748 | 005348 (9) | ref|XP_009627036.1| | 8e-118 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi |
JMSF032A07 | Sequence | 653 | 000032 (14) | ref|XP_009772632.1| | 2e-105 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 737 | 005348 (9) | ref|XP_009627036.1| | 9e-119 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi |
JMSF041H21 | Sequence | 758 | 000032 (14) | ref|XP_009772632.1| | 2e-129 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 767 | 005348 (9) | ref|XP_009627036.1| | 4e-120 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi |
This contig is upended
. : . : . : . : . : . :
rJMFF032L17+ CAACTGACAT
rJMFF031N16+ GACAT
rJMSF041H21+ GACAT
rJMFF012L24+ GACAT
____________________________________________________________
consensus CAACTGACAT
. : . : . : . : . : . :
rJMSF032A07+ CCCGGATATGATCACATAACCTCAGCCATT-GGAGCTGCTAATATTGGAGCACTTG
rJMFF032L17+ AGCTCCCGGATATGATCACATAACCTCAGCCATT-GGAGCTGCTAATATTGGAGCACTTG
rJMFF031N16+ AGCTNCCGGATATGATCACATAACNTCAGCCATT-GGAGCTGCTAATATTGGAGCACTTG
rJMSF003P12+ CTCCCGGATATGATCACATAACNTCAGCCATN-GGAGCTGCTAATATTGGAGCACTTG
rJMSF041H21+ AGCTCCCGGATATGATCACATAACNTCAGCCATN-GGAGCTGCTAATATTGGAGCACTTG
rJMFF031K17+ GCACTTG
rJMFF012L24+ AGCTCCCGGATATGATCACATAACNTCAGCCATT-GGAGCTGCTAATATTGGAGCACTTG
rJMFF008H15+ ATATGATCACATAACCTCAGCCATTGGGAGCTGCTAATATTGGAGCACTTG
____________________________________________________________
consensus AGCTCCCGGATATGATCACATAACCTCAGCCATT-GGAGCTGCTAATATTGGAGCACTTG
. : . : . : . : . : . :
rJMSF032A07+ GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
rJMFF032L17+ GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
rJMFF031N16+ GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTNGCCTAATC-GGGAT
rJMSF003P12+ GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
rJMSF041H21+ GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
rJMFF031K17+ GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCNTAATCGGGGAT
rJMFF012L24+ GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
rJMFF024J20+ TCCAAAAGAGCATCTNGGGTTGCCTAATC-GGGAN
rJMFF008H15+ GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
____________________________________________________________
consensus GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
. : . : . : . : . : . :
rJMSF032A07+ GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF032L17+ GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF031N16+ GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATNTAGCAAAA
rJMSF003P12+ GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMSF041H21+ GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF031K17+ GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF012L24+ GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF024J20+ GATGTGAAGGCNGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF008H15+ GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
____________________________________________________________
consensus GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
. : . : . : . : . : . :
rJMSF032A07+ GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF032L17+ GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF031N16+ GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMSF003P12+ GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMSF041H21+ GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF031K17+ GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF012L24+ GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF024J20+ GGTCACCCTCTGGCACAAACNTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF008H15+ GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
____________________________________________________________
consensus GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
. : . : . : . : . : . :
rJMSF032A07+ TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF032L17+ TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF031N16+ TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMSF003P12+ TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMSF041H21+ TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF031K17+ TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF012L24+ TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF024J20+ TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF008H15+ TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
____________________________________________________________
consensus TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
. : . : . : . : . : . :
rJMSF032A07+ ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF032L17+ ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF031N16+ ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMSF003P12+ ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMSF041H21+ ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF031K17+ ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF012L24+ ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF024J20+ ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF008H15+ ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
____________________________________________________________
consensus ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
. : . : . : . : . : . :
rJMSF032A07+ TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF032L17+ TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF031N16+ TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMSF003P12+ TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMSF041H21+ TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF031K17+ TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF012L24+ TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF024J20+ TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF008H15+ TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
____________________________________________________________
consensus TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
. : . : . : . : . : . :
rJMSF032A07+ GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF032L17+ GCAGAGGAAGCCATCCGACGTGGGATGGATGGTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF031N16+ GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMSF003P12+ GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMSF041H21+ GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF031K17+ GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF012L24+ GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF024J20+ GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF008H15+ GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
____________________________________________________________
consensus GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
. : . : . : . : . : . :
rJMSF032A07+ AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF032L17+ AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF031N16+ AAAACTGTGAGTGGTGAACANCACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMSF003P12+ AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMSF041H21+ GAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF031K17+ AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF012L24+ AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF024J20+ AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF008H15+ AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
____________________________________________________________
consensus AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
. : . : . : . : . : . :
rJMSF032A07+ TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
rJMFF032L17+ TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
rJMFF031N16+ TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
rJMSF003P12+ TACGTAAACTCTTTGAAGATCTAAAGGGGCTTTGCAGGATGATAAGGACACATGAAGAAC
rJMSF041H21+ TACGTAAACTCTTTGAAGATCTAAAGGGGCTTTGCAGGATGATAAGGACACATGAAGAAC
rJMFF031K17+ TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
rJMFF012L24+ TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
rJMFF024J20+ TACGTAAACTCTTTGAAGATCTAAAGGGGCTTTGCAGGATGATAAGGACACATGAAGAAC
rJMFF008H15+ TACGTAAACTCTTTGAAGATCTAAAGGGGCTTTGCAGGATGATAAGGACACATGAAGAAC
____________________________________________________________
consensus TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
. : . : . : . : . : . :
rJMSF032A07+ TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF032L17+ TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF031N16+ TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMSF003P12+ TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMSF041H21+ TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF031K17+ TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF012L24+ TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF024J20+ TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF008H15+ TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
____________________________________________________________
consensus TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
. : . : . : . : . : . :
rJMSF032A07+ CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF032L17+ CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF031N16+ CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMSF003P12+ CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMSF041H21+ CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF031K17+ CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF012L24+ CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF024J20+ CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF008H15+ CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
____________________________________________________________
consensus CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
. : . : . : . : . : . :
rJMSF032A07+ TAAAAATATCTAGAC
rJMFF032L17+ TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTA
rJMFF031N16+ TAAAAATATCTAGA-CAATGTCATGTTCAAGAAT
rJMSF003P12+ TAAAAATATCTAGAC
rJMSF041H21+ TAAAAATATCTAGACCAATGTCATGTTCAAGAATGTCTCTT
rJMFF031K17+ TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTA
rJMFF012L24+ TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTAATGAAAA
rJMFF024J20+ TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTAATGAAAA
rJMFF008H15+ TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTAATGAAAACC
____________________________________________________________
consensus TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTAATGAAAACC