Contig 005346:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050B08+                                              TCTCATGTTTTCTGGAGGTAATCC
                      ____________________________________________________________
consensus                                                 TCTCATGTTTTCTGGAGGTAATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050B08+          ATGTGCATATTTCNTTGTAAACTTGGGGCAAAGTAATGCGTGGGGTATTTTGATTTTAGA
                      ____________________________________________________________
consensus             ATGTGCATATTTCNTTGTAAACTTGGGGCAAAGTAATGCGTGGGGTATTTTGATTTTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050B08+          CCACCGGTGTCACGGTTTTGTTGAAGAAAGATACTAAAGAGATAGCTACTAGAAGAGTTT
                      ____________________________________________________________
consensus             CCACCGGTGTCACGGTTTTGTTGAAGAAAGATACTAAAGAGATAGCTACTAGAAGAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050B08+          ATTAATCTTGAGGTTCCAACTCCATTGACGCACCAAAAAGAATTATGTGTACTTTCTCAC
                      ____________________________________________________________
consensus             ATTAATCTTGAGGTTCCAACTCCATTGACGCACCAAAAAGAATTATGTGTACTTTCTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050B08+          TTTTACTCATAATGTGACATATTTTAATTATGTGAGTCTCAGAACAAATGTTAATATCAA
                      ____________________________________________________________
consensus             TTTTACTCATAATGTGACATATTTTAATTATGTGAGTCTCAGAACAAATGTTAATATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050B08+          GAATTTATGAGAGGAAGTATAATATTAGGAGTAAAAAGTGAAAGTTAGTATGTTTGGAAT
                      ____________________________________________________________
consensus             GAATTTATGAGAGGAAGTATAATATTAGGAGTAAAAAGTGAAAGTTAGTATGTTTGGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050B08+          AAAAGAAGATAAAAAAAAGGCAACCATTTCCATTCTTCTAAAAGGCTGAACCCCAACCAA
                      ____________________________________________________________
consensus             AAAAGAAGATAAAAAAAAGGCAACCATTTCCATTCTTCTAAAAGGCTGAACCCCAACCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008A23-                                            CAGGTGCGTTGAAAGGGATGGCAAGAT
rJMSF050B08+          GACAACCATTTCCATGTTTTGATGACTGATCATCAGGTGCGTTGAAAGGGATGGCAAGAT
rJMFF008A23+                                           CAGGTGCGTTGAAAGGGATGGCAAGAT
                      ____________________________________________________________
consensus             GACAACCATTTCCATGTTTTGATGACTGATCATCAGGTGCGTTGAAAGGGATGGCAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008A23-           CAGAGTTGTATGAGATCTGTGCAGCCAGTCGCTGGAACCCACCAGTCTTTGACTGTTGCA
rJMSF050B08+          CAGAGTTGTATGAGATCTGTGCAGCCAGTCGCTGGAACCCACCAGTCTTTGACTGTTGCA
rJMFF008A23+          CAGAGTTGTATGAGATCTGTGCAGCCAGTCGCTGGAACCCACCAGTCTTTGACTGTTGCA
                      ____________________________________________________________
consensus             CAGAGTTGTATGAGATCTGTGCAGCCAGTCGCTGGAACCCACCAGTCTTTGACTGTTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008A23-           GTGAGGAAGGTCCAAGTCACCAGAAAACGTTCAAGTTCANGGTANGGGTAGAGATAAAAG
rJMSF050B08+          GTGAGGAAGGTCCAAGTCACCAGAAAACGTTCAAGTTCAAGGTAAGGGTAGAGATAAAAG
rJMFF008A23+          GTGAGGAAGGTCCAAGTCACCAGAAAACGTTCAAGTTCAAGGTAAGGGTAGAGATAAAAG
                      ____________________________________________________________
consensus             GTGAGGAAGGTCCAAGTCACCAGAAAACGTTCAAGTTCAAGGTAAGGGTAGAGATAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008A23-           GAGAACATAAAGCGACCACTTTGGTGTGTTTTAGCAACCCGTTTCCGATGAAGAAAGCGG
rJMSF050B08+          GAGAACATAAAGCGACCACTTTGGTGTGTTTTAGCAACCCGTTTCCGATGAAGAAAGCGG
rJMFF008A23+          GAGAACATAAAGCGACCACTTTGGTGTGTTTTAGCAACCCGTTTCCGATGAAGAAAGCGG
                      ____________________________________________________________
consensus             GAGAACATAAAGCGACCACTTTGGTGTGTTTTAGCAACCCGTTTCCGATGAAGAAAGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008A23-           CGGCAGAGAATGCANCTGAAGGGGCACTCTGGTTCTTGAACCATCTTGGTTATCGCTCA 
rJMSF050B08+          CGGCAGAGAATGCAGCTGAAGGGGCACTCTGGTTCTTGAACCATCTTGGTTATCGCTCAA
rJMFF008A23+          CGGCAGAGAATGCAGCTGAAGGGGCACTCTGGTTCTTGAACCATCTTGGTTATCGCTCAA
                      ____________________________________________________________
consensus             CGGCAGAGAATGCAGCTGAAGGGGCACTCTGGTTCTTGAACCATCTTGGTTATCGCTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050B08+          AGAATCAATGAAAAAAAGAAAAAAACATTCTGGATTTTCTGTCAGTCTGGAGTGCCA   
rJMFF008A23+          AGAATCAATGAAAAAAAGAAAAAAACATTCTGGATTTTCTGTCAGTCTGGAGTGCCAATT
                      ____________________________________________________________
consensus             AGAATCAATGAAAAAAAGAAAAAAACATTCTGGATTTTCTGTCAGTCTGGAGTGCCAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF008A23+          ACAATAAAATTGTAAGTGTAAAATATTTTATTATTATTTTTTTAATTAGAGAACAAAAAA
                      ____________________________________________________________
consensus             ACAATAAAATTGTAAGTGTAAAATATTTTATTATTATTTTTTTAATTAGAGAACAAAAAA