Contig 005345:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007K24Sequence557012058 (5)emb|CDP01297.1|8e-56unnamed protein product [Coffea canephora]628005345 (5)ref|XP_009787502.1|3e-70PREDICTED: probable inactive receptor kinase At5g67200 [Nicotiana sylvestris]
JMFF030I03Sequence351012058 (5)emb|CDP01297.1|2e-28unnamed protein product [Coffea canephora]674005345 (5)ref|XP_009787502.1|4e-99PREDICTED: probable inactive receptor kinase At5g67200 [Nicotiana sylvestris]
JMFS020E11Sequence605005345 (5)ref|XP_009787502.1|9e-76PREDICTED: probable inactive receptor kinase At5g67200 [Nicotiana sylvestris]
JMSF030C02Sequence672012058 (5)ref|XP_009787502.1|2e-26PREDICTED: probable inactive receptor kinase At5g67200 [Nicotiana sylvestris]636005345 (5)ref|XP_009787502.1|1e-103PREDICTED: probable inactive receptor kinase At5g67200 [Nicotiana sylvestris]
JMSF052G17Sequence681012058 (5)emb|CDP01297.1|8e-84unnamed protein product [Coffea canephora]910005345 (5)ref|XP_009787502.1|2e-171PREDICTED: probable inactive receptor kinase At5g67200 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF052G17+                                                     AGGTGTATACTTTGGAG
                      ____________________________________________________________
consensus                                                        AGGTGTATACTTTGGAG
 
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rJMSF052G17+          CAGCTGATGAAAGCCTCGGCGGAGCTTCTGGGGCGGGGAACGCTGGGCACCACCTACAAG
                      ____________________________________________________________
consensus             CAGCTGATGAAAGCCTCGGCGGAGCTTCTGGGGCGGGGAACGCTGGGCACCACCTACAAG
 
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rJMSF052G17+          GCGGTGCTCGACAACCGTTTGATTGTTTGCGTGAAAAGATTAGACTCTGGGAAAATGGCG
                      ____________________________________________________________
consensus             GCGGTGCTCGACAACCGTTTGATTGTTTGCGTGAAAAGATTAGACTCTGGGAAAATGGCG
 
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rJMSF052G17+          GGTAGCAGTAAGGATGAGTTTGAACGGCACATGGAATCAGTGGGCGGATTGCGCCACCCA
                      ____________________________________________________________
consensus             GGTAGCAGTAAGGATGAGTTTGAACGGCACATGGAATCAGTGGGCGGATTGCGCCACCCA
 
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rJMSF052G17+          AATTTGGTTCCTCTCAGAGCTTATTTCCAGGCCAAGGAAGAACGCCTTCTGGTCTATGAT
rJMFF030I03+                                                               CTATGAT
                      ____________________________________________________________
consensus             AATTTGGTTCCTCTCAGAGCTTATTTCCAGGCCAAGGAAGAACGCCTTCTGGTCTATGAT
 
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rJMSF052G17+          TACCAGCCCAATGGCAGTCTCTTCTCCCTTATCCATGGTTCTAAGTCCTCAAGAGCAAAG
rJMSF030C02+                                      TTATCCATGGTTCTAAGTCCTCAAGAGCAAAG
rJMFF030I03+          TACCAGCCCAATGGCAGTCTCTTCTCCCTTATCCATGGTTCTAAGTCCTCAAGAGCAAAG
                      ____________________________________________________________
consensus             TACCAGCCCAATGGCAGTCTCTTCTCCCTTATCCATGGTTCTAAGTCCTCAAGAGCAAAG
 
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rJMSF052G17+          CCACTTCACTGGACTTCGTGCTTGAAAATAGCAGAGGATGTAGCTCAAGGCCTCTCGTAT
rJMSF030C02+          CCACTTCACTGGACTTCGTGCTTGAAAATAGCAGAGGATGTAGCTCAAGGCCTCTCGTAT
rJMFF030I03+          CCACTTCACTGGACTTCGTGCTTGAAAATAGCAGAGGATGTAGCTCAAGGCCTCTCGTAT
                      ____________________________________________________________
consensus             CCACTTCACTGGACTTCGTGCTTGAAAATAGCAGAGGATGTAGCTCAAGGCCTCTCGTAT
 
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rJMSF052G17+          ATCCACCAAGCATGGAGGCTGGTTCACGGCAACCTCAAGTCCTCTAATGTCCTCCTGGGA
rJMSF030C02+          ATCCACCAAGCATGGAGGCTGGTTCACGGCAACCTCAAGTCCTCTAATGTCCTCCTGGGA
rJMFF030I03+          ATCCACCAAGCATGGAGGCTGGTTCACGGCAACCTCAAGTCCTCTAATGTCCTCCTGGGA
JMFS020E11+                 CAAGCATGNAGGCTGGTTCACGGCAACCTCAAGTCCTCTAATGTCCTCCTGGGA
rJMFF007K24+                                          CCTCAAGTCCTCTAATGTCCTCCTGGGA
                      ____________________________________________________________
consensus             ATCCACCAAGCATGGAGGCTGGTTCACGGCAACCTCAAGTCCTCTAATGTCCTCCTGGGA
 
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rJMSF052G17+          TCCGATTTCGAGGCCTGCATTTCTGATTACTGCCTCTCGGTCTTAGCCAACCCCTTCTCA
rJMSF030C02+          TCCGATTTCGAGGCCTGCATTTCTGATTACTGCCTCTCGGTCTTAGCCAACCCCTTCTCA
rJMFF030I03+          TCCGATTTCGAGGCCTGCATTTCTGATTACTGCCTCTCGGTCTTAGCCAACCCCTTCTCA
JMFS020E11+           TCCGATTTCGAGGCCTGCATTTCTGATTACTGCCTCTCGGTCTTAGCCAACCCCTTCTCA
rJMFF007K24+          TCCGATTTCGAGGCCTGCATTTCTGATTACTGCCTCTCGGTCTTAGCCAACCCCTTTTCA
                      ____________________________________________________________
consensus             TCCGATTTCGAGGCCTGCATTTCTGATTACTGCCTCTCGGTCTTAGCCAACCCCTTCTCA
 
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rJMSF052G17+          GATGACGACCCTGATTGT---GCCTACAAGGCACCCGAGGTTCGAAAACTAAACCCGCAC
rJMSF030C02+          GATGACGACCCTGATTGTGCAGCCTACAAGGCACCCGAGGTTCGAAAACTAAACCCGCAC
rJMFF030I03+          GATGACGACCCTGATTGTGCAGCCTACAAGGCACCCGAGGTTCGAAAACTAAACCCGCAC
JMFS020E11+           GATGACGACCCTGATTGTGCAGCCTACAAGGCACCCGAGGTTCGAAAACTAAACCCGCAC
rJMFF007K24+          GATGACGACCCTGATTGTGCAGCCTACAAGGCACCCGAGGTTCGAAAACTAAACCCGCAC
                      ____________________________________________________________
consensus             GATGACGACCCTGATTGTGCAGCCTACAAGGCACCCGAGGTTCGAAAACTAAACCCGCAC
 
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rJMSF052G17+          CATCAAGCAACTTCCAAGTCTGATGTTTACTCCTATGGAGTTCTTGTACTGGAACTGCTT
rJMSF030C02+          CATCAAGCAACTTCCAAGTCTGATGTTTACTCCTATGGAGTTCTTGTACTGGAACTGCTT
rJMFF030I03+          CATCAAGCAACTTCCAAGTCTGATGTTTACTCCTATGGAGTTCTTGTACTGGAACTGCTT
JMFS020E11+           CATCAAGCAACTTCCAAGTCTGATGTTTACTCCTATGGAGTTCTTGTACTGGAACTGCTT
rJMFF007K24+          CATCAAGCAACTTCCAAGTCTGATGTTTACTCCTATGGAGTTCTTGTACTGGAACTGCTT
                      ____________________________________________________________
consensus             CATCAAGCAACTTCCAAGTCTGATGTTTACTCCTATGGAGTTCTTGTACTGGAACTGCTT
 
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rJMSF052G17+          ACTGGGAAGCATCCCTCAGAACACCCAGTTCTAATGCCGGATGAGATGATGAAGTGGGTA
rJMSF030C02+          ACTGGGAAGCATCCCTCAGAACACCCAGTTCTAATGCCGGATGAGATGATGAAGTGGGTA
rJMFF030I03+          ACTGGGAAGCATCCCTCAGAACACCCAGTTCTAATGCCGGATGAGATGATGAAGTGGGTA
JMFS020E11+           ACTGGGAATCATCCCTCAGAACACCCAGTTCTAATGCCGGATGAGATGATGAAGTGGGTA
rJMFF007K24+          ACTGGGAAGCATCCCTCAGAACACCCAGTTCTAATGCCGGATGAGATGATGAAGTGGGTA
                      ____________________________________________________________
consensus             ACTGGGAAGCATCCCTCAGAACACCCAGTTCTAATGCCGGATGAGATGATGAAGTGGGTA
 
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rJMSF052G17+          AGGTCCACCAGGGACGATGATGATGGCAGAGAAGAAAACGGCATTAGGCTGGGAATGATT
rJMSF030C02+          AGGTCCACCAGGGACGATGATGATGGCAGAGAAGAAAACGGCATTAGGCTGGGAATGATT
rJMFF030I03+          AGGTCCACCAGGGACGATGATGATGGCAGAGAAGAAAACGGCATTAGGCTGGGAATGATT
JMFS020E11+           AGGTCCACCAGGGACGATGATGATGGCAGAGAAGAAAACGGCATTAGGCTGGGAATGATT
rJMFF007K24+          AGGTCCACCAGGGACGATGATGATGGCAGAGAAGAAAACGGCATTAGGCTGGGAATGATT
                      ____________________________________________________________
consensus             AGGTCCACCAGGGACGATGATGATGGCAGAGAAGAAAACGGCATTAGGCTGGGAATGATT
 
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rJMSF052G17+          CTTGAAGTGGCAATGGTGTGCAGTGTGGCGTCCCCAGAGCAAAGACCGACCATGTGGCAA
rJMSF030C02+          CTTGAAGTGGCAATGGTGTGCAGTGTGGCGTCCCCAGAGCAAAGACCGACCATGTGGCAA
rJMFF030I03+          CTTGAAGTGGCAATGGTGTGCAGTGTGGCGTCCCCAGAGCAAAGACCGACCATGTGGCAA
JMFS020E11+           CTTGAAGTGGCAATGGTGTGCAGTGTGGCGTCCCCAGAGCAAAGACCGACCATGTGGCAA
rJMFF007K24+          CTTGAAGTGGCAATGGTGTGCAGTGTGGCGTCCCCAGAGCAAAGACCGACCATGTGGCAA
                      ____________________________________________________________
consensus             CTTGAAGTGGCAATGGTGTGCAGTGTGGCGTCCCCAGAGCAAAGACCGACCATGTGGCAA
 
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rJMSF052G17+          GTGTTGAAGATGATCCAGGAGATCAAAGATGCCGCCATTATGGAGGAGGATGGTCGGGAA
rJMSF030C02+          GTGTTGAAGATGATCCAGGAGATCAAAGATGCCGCCATTATGGAGGAGGATGGTCGGGAA
rJMFF030I03+          GT-TTGAAGATGATCCAGGAGATCAAAGATGCCGCCATTATGGAGGAGGATGGTCGGGAA
JMFS020E11+           GTGTTGAAGATGATCCAGGAGATCAAAGATGCCGCCATTATGGAGGAGGATGGTCGGGAA
rJMFF007K24+          GTGTTGAAGATGATCCAGGAGATCAAAGATGCCGCCATTATGGAGGAGGATGGTCGGGAA
                      ____________________________________________________________
consensus             GTGTTGAAGATGATCCAGGAGATCAAAGATGCCGCCATTATGGAGGAGGATGGTCGGGAA
 
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rJMSF052G17+          ATGGACCTACTCACCGGGACTTGACTCTTCAGCATATACTATTATTATTTTTGCTA    
rJMSF030C02+          ATGGACCTACTCACCGGGACTTGACTCTTCAGCATATACTATTATTATTTTTGCTATGTA
rJMFF030I03+          ATGGACCTACTCACCGGGACTTGACTCTTCAGCATATACTATTATTATTTTTGCTATGTA
JMFS020E11+           ATGGACCTACTCACCGGGACTTGACTCTTCAGCATATACTATTATTATTTTTGCTATGTA
rJMFF007K24+          ATGGACCTACTCACCGGGACTTGACTCTTCAGCATATACTATTATTATTTTTGCTATGTA
                      ____________________________________________________________
consensus             ATGGACCTACTCACCGGGACTTGACTCTTCAGCATATACTATTATTATTTTTGCTATGTA
 
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rJMSF030C02+          TATA                                                        
rJMFF030I03+          TATA                                                        
JMFS020E11+           TATATACTTGAGCATGGCGACATAACTTTTCCACACAAA                     
rJMFF007K24+          TATATACTTGAGCATGGCGACATAACTTTTCCACACAAACCCTCTCTAATTCTTCCCTTC
                      ____________________________________________________________
consensus             TATATACTTGAGCATGGCGACATAACTTTTCCACACAAACCCTCTCTAATTCTTCCCTTC
 
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rJMFF007K24+          CATTCTTTACTAAAGTAGCACAAGTGTTTTGCTTTCTTTTTTAGTACGTCCAAAGTTTAT
                      ____________________________________________________________
consensus             CATTCTTTACTAAAGTAGCACAAGTGTTTTGCTTTCTTTTTTAGTACGTCCAAAGTTTAT