Contig 005344:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF020D11+                                                       TTCCAGCAGCAGAAA
rJMFF031P09+                                       CTTCAAGAACTCATTNTTCCAGCAGCAGAAA
                      ____________________________________________________________
consensus                                          CTTCAAGAACTCATTNTTCCAGCAGCAGAAA
 
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rJMFF020D11+          TAAGTCAAATACCCATATGTCAGATACTGTATATAGAGGCCATTATCTTGAGCAGCACAG
rJMFF031P09+          TAAGTCAAATAACCATATGTCAGATACTGTATATAGAGGCCATTATCTTGAGCAGCACAG
                      ____________________________________________________________
consensus             TAAGTCAAATACCCATATGTCAGATACTGTATATAGAGGCCATTATCTTGAGCAGCACAG
 
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rJMFF020D11+          GTCTAGGGATACTAGTTTTGAATTCGAGGGTCCTACAAGGCAGCGGTTTAGGGGTATTGA
rJMFF031P09+          GTCTAGGGATACTAGTTTTGAATTCGAGGGTCCTACAAGGCAGCGGTTTAGGGGTATTGA
rJMFF007F16+                                           TACAAGGCAGCGGTTTAGGGGTATTGA
                      ____________________________________________________________
consensus             GTCTAGGGATACTAGTTTTGAATTCGAGGGTCCTACAAGGCAGCGGTTTAGGGGTATTGA
 
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rJMFF020D11+          AGGTGAAGGCCCACACCGGCATTTTAGTGGTATTGAAGGTGAAGGTCCTCCACACTGGCA
rJMFF031P09+          AGGTGAAGGCCCACACCGGCATTTTAGTGGTATTGAAGGTGAAGGTCCTCCACACTGGCA
rJMFF007F16+          AGGTGAAGGCCCACACCAGCATTTTAGTGGTATTGAAGGTGAAGGTCCTCCACACTGGCA
                      ____________________________________________________________
consensus             AGGTGAAGGCCCACACCGGCATTTTAGTGGTATTGAAGGTGAAGGTCCTCCACACTGGCA
 
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rJMFF020D11+          TTTTAGTGGTATTGAAGGTGAAGGTCCTCCACACCGGCATTTTAGTGGTATTGAAGGTGA
rJMFF031P09+          TTTTAGTGGTATTGAAGGTGAAGGTCCTCCACACCGGCATTTTAGTGGTATTGAAGGTGA
rJMFF007F16+          TTTTAGTGGTATTGAAGGTGAAGGTCCTCCACACCGGCATTTTAGTGGTATTGAAGGTGA
                      ____________________________________________________________
consensus             TTTTAGTGGTATTGAAGGTGAAGGTCCTCCACACCGGCATTTTAGTGGTATTGAAGGTGA
 
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rJMFF020D11+          AGGTCCTCCACACCGGCATTTTAGTGGTATTGAAGGTGAAGGTCTTCCACATTGGCGGTT
rJMFF031P09+          AGGTCCTCCACACCGGCATTTTAGTGGTATTGAAGGTGAAGGTCTTCCACATTGGCGGTT
rJMFF007F16+          AGGTCCTCCACACCGGCATTTTAGTGGTATTGAAGGTGAACGTNTTCCACATTGGCGGTT
                      ____________________________________________________________
consensus             AGGTCCTCCACACCGGCATTTTAGTGGTATTGAAGGTGAAGGTCTTCCACATTGGCGGTT
 
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rJMFF020D11+          TAGGGATTTTGAAGGCAAATGCGCCCCACGCTCACAATTTGAGTTCAACAATGAAAGACC
rJMFF031P09+          TAGGGATTTTGAAGGCAAATGCGCCCCACGCTCACAATTTGAGTTCAACAATGAAAGACC
rJMFF007F16+          TAGGGATTTTGAAGGCAAATGCGCCCCACGCTCACAATTTGAGTTCAACAATGAAAGACC
                      ____________________________________________________________
consensus             TAGGGATTTTGAAGGCAAATGCGCCCCACGCTCACAATTTGAGTTCAACAATGAAAGACC
 
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rJMFF020D11+          TCCAGCAGGCTACGAACTTGACCCTGCGTTCATCCCATTGTCTTACAGATACCGGGATTA
rJMFF031P09+          TCCAGCAGGCTACGAACTTGACCCTGCGTTCATCCCATTGTCTTACAGATACCGGGATTA
rJMFF007F16+          TCCAGCAGGCTACGAACTTGACCCTGCGTTCATCCCATTGTCTTACAGATACCGGGATTA
                      ____________________________________________________________
consensus             TCCAGCAGGCTACGAACTTGACCCTGCGTTCATCCCATTGTCTTACAGATACCGGGATTA
 
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rJMFF020D11+          TGACTCCATTAGCGGTCCAATGGATGGTTTCAGAAGATCATTGTCAGACAGATTTAGAAG
rJMFF031P09+          TGACTCCATTAGCGGTCCAATGGATGGTTTCAGAAGATCATTGTCAGACAGATTTAGAAG
rJMFF007F16+          TGACTCCATTAGCGGTCCAATGGATGGTTTCAGAAGATCATTGTCAGACAGATTTAGAAG
                      ____________________________________________________________
consensus             TGACTCCATTAGCGGTCCAATGGATGGTTTCAGAAGATCATTGTCAGACAGATTTAGAAG
 
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rJMFF020D11+          AAGCCCACTAGTAGACAACCATACTTTCTACGACACTTGGTACCCAAGATATTGACAACC
rJMFF031P09+          AAGCCCACTAGTAGACAACCATACTTTCTACGACACTTGGTACCCAAGATATTGACAACC
rJMFF007F16+          AAGCCCANTAGTAGACAACCATACTTTNTACGACACTTGGTACCCAAGATATTGACAACC
                      ____________________________________________________________
consensus             AAGCCCACTAGTAGACAACCATACTTTCTACGACACTTGGTACCCAAGATATTGACAACC
 
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rJMFF020D11+          ATTTCTTTGCAGAGATGGTGAAAGGATCTTTATGGATACATACAAAGTATTCTTTAACAC
rJMFF031P09+          ATTTCTTTGCAGAGATGGTGAAAGGATCTTTATGGATACATACAAAGTATTCTTTAACAC
rJMFF007F16+          ATTTCTTTGCAGAGATGGTGAAAGGATCTTTATGGATACATACAAAGTATTCTTTAACAC
                      ____________________________________________________________
consensus             ATTTCTTTGCAGAGATGGTGAAAGGATCTTTATGGATACATACAAAGTATTCTTTAACAC
 
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rJMFF020D11+          AGTGGCAGACACCAAGGATGTTATACCTCATTCATTGCCACAGGTGAATAAAACAGAGGA
rJMFF031P09+          AGTGGCAGACACCAAGGATGTTATACCTCATTCATTGCCACAGGTGAATAAAACAGAGGA
rJMFF007F16+          AGTGGCAGACACCAAGGATGTTATACCTCATTCATTGCCACAGGTGAATAAAACAGAGGA
                      ____________________________________________________________
consensus             AGTGGCAGACACCAAGGATGTTATACCTCATTCATTGCCACAGGTGAATAAAACAGAGGA
 
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rJMFF020D11+          TTTAAGGGTGTGCTTAAATTAAGCTATTATATGTACCTGTAAGATTCATTATTGTAGCAT
rJMFF031P09+          TTTAAGGGTGTGCTTAAATTAAGCTATTATATGTACCTGTAAGATTCATTATTGTAGCAT
rJMFF007F16+          TTTAAGGGTGTGCTTAAATTAGGCTATTATATGTACCTGTAAGATTCATTATTGTAGCAT
                      ____________________________________________________________
consensus             TTTAAGGGTGTGCTTAAATTAAGCTATTATATGTACCTGTAAGATTCATTATTGTAGCAT
 
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rJMFF020D11+          TGTTGTTGAAGA                                                
rJMFF031P09+          TGTTGTTGAAGA                                                
rJMFF007F16+          TGTTGTTGAAGATTTCCTTAGTAATGAGGTGTATGTTGTAACATTTTCCTTGTGTTGATG
                      ____________________________________________________________
consensus             TGTTGTTGAAGATTTCCTTAGTAATGAGGTGTATGTTGTAACATTTTCCTTGTGTTGATG