Contig 005343:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006K22Sequence748005343 (4)ref|XP_002281862.2|9e-80PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Vitis vinifera]
JMSF013L21Sequence729005343 (4)ref|XP_002281862.2|1e-80PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Vitis vinifera]
JMSF014L21Sequence565005343 (4)ref|XP_003588960.1|1e-46G protein alpha subunit [Medicago truncatula]
JMSF051M19Sequence759005343 (4)emb|CBI20732.3|2e-85unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF013L21+                                          GAGGATGAAAACAAGAATCGGATGATGG
rJMSF051M19+           TGCTATTAGNGAGTATGATCAGACACTATTNGAGGATGAAACCAAGAATCGGATGATGG
rJMFF006K22+                                          GAGGATGAAAACAAGAATCGGATGATGG
                      ____________________________________________________________
consensus              TGCTATTAGNGAGTATGATCAGACACTATTNGAGGATGAAAACAAGAATCGGATGATGG
 
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rJMSF013L21+          AGAGCAAAGAACTCTTTGAGTGGATTCTGAAACAGCCATGTTTTGAGAAAACATCATTCA
rJMSF014L21+                                                   TTTGAGAAAACATCATTCA
rJMSF051M19+          AGAGCAAAGAACTCTTTGAGTGGATTCTGAAACAGCCATGTTTTGAGAAAACATCATTCA
rJMFF006K22+          AGAGCAAAGAACTCTTTGAGTGGATTCTGAAACAGCCATGTTTTGAGAAAACATCATTCA
                      ____________________________________________________________
consensus             AGAGCAAAGAACTCTTTGAGTGGATTCTGAAACAGCCATGTTTTGAGAAAACATCATTCA
 
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rJMSF013L21+          TGTTATTTCTCAACAAATTTGATTTATTTGAAAAGAAGGTTCTGAAAGTGCCTCTCAATG
rJMSF014L21+          TGTTATTTCTCAACAAATTTGATTTATNTGAAAAGAAGGTTCTGAAAGTNCCTCNCAATG
rJMSF051M19+          TGTTATTTCTCAACAAATTTGATTTATTTGAAAAGAAGGTTCTGAAAGTGCCTCTCAATG
rJMFF006K22+          TGTTATTTCTCAACAAATTTGATTTATTTGAAAAGAAGGTTCTGAAAGTGCCTCTCAATG
                      ____________________________________________________________
consensus             TGTTATTTCTCAACAAATTTGATTTATTTGAAAAGAAGGTTCTGAAAGTGCCTCTCAATG
 
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rJMSF013L21+          TATGTGAGTGGTACAAAGATTACCAGCCAGTTTCCTCGGGAAAACAAGAGATTGAACATG
rJMSF014L21+          TATGTGAGTGGTACNAAGATTNCCAGCCAGTTTCCTCGGGAAAACAAGAGATTGNACANG
rJMSF051M19+          TATGTGAGTGGTACAAAGATTACCAGCCAGTTTCCTCGGGAAAACAAGAGATTGAACATG
rJMFF006K22+          TATGTGAGTGGTACAAAGATTACCAGCCAGTTTCCTCGGGAAAACAAGAGATTGAACATG
                      ____________________________________________________________
consensus             TATGTGAGTGGTACAAAGATTACCAGCCAGTTTCCTCGGGAAAACAAGAGATTGAACATG
 
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rJMSF013L21+          CATACGAGTTTGTTAAAAAGAAATTTGAAGAGTCGTATTTCCAGAACACTGCCCCTGATT
rJMSF014L21+          CATNCGAGTTTGTTAAAAAGAAATTNGAAGAGTCGNATTTCCAGAACACTGCCCCTGATT
rJMSF051M19+          CATACGAGTTTGTTAAAAAGAAATTTGAAGAGTCGTATTTCCAGAACACTGCCCCTGATT
rJMFF006K22+          CATACGAGTTTGTTAAAAAGAAATTTGAAGAGTCGTATTTCCATAACACTGCCCCTGATT
                      ____________________________________________________________
consensus             CATACGAGTTTGTTAAAAAGAAATTTGAAGAGTCGTATTTCCAGAACACTGCCCCTGATT
 
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rJMSF013L21+          GTGTGGACCGGGTTTTTAAAATCTATAGAACCACGGCCCTTGACCAGAAGCTTGTAAAGA
rJMSF014L21+          GTGTGGACCGGGTTTTTAAAATNTATAGAACCNCGGCCCTTGCCCAGAAGCTTGTAAAGA
rJMSF051M19+          GTGTGGACCGGGTTTTTAAAATCTATAGAACCACGGCCCTTGACCAGAAGCTTGTAAAGA
rJMFF006K22+          GTGTGGACCGGGTTTTTAAAATCTATAGAACCACGGCCCTTGACCAGAAGCTTGTAAAGA
                      ____________________________________________________________
consensus             GTGTGGACCGGGTTTTTAAAATCTATAGAACCACGGCCCTTGACCAGAAGCTTGTAAAGA
 
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rJMSF013L21+          AGACTTTCAAACTGGTAGACGAGACATTGAGAAGGAGAAACCTGTTTGAAGCGGGTTTGT
rJMSF014L21+          AGACTTTCAANCTGGTAGACGAGACATTGAGAAGGAGAAACCTGTTTGAAGCGGGTTTGT
rJMSF051M19+          AGACTTTCAAACTGGTAGACGAGACATTGAGAAGGAGAAACCTGTTTGAAGCGGGTTTGT
rJMFF006K22+          AGACTTTCAAACTGGTAGACGAGACATTGAGAAGGAGAAACCTGTTTGAAGCGGGTTTGT
                      ____________________________________________________________
consensus             AGACTTTCAAACTGGTAGACGAGACATTGAGAAGGAGAAACCTGTTTGAAGCGGGTTTGT
 
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rJMSF013L21+          TGTGACAATCTACAAAGGAGAAATGTTGATATATTGGAAAAAGATGCGCGGAGTTAAAAG
rJMSF014L21+          TGTGACAATCTACAAAGGAGAAATGTTGATATATTGGAAAAAGATGCGCGGAGTTAAAAG
rJMSF051M19+          TGTGACAATCTACAAAGGAGAAATGTTGATATATTGGAAAAAGATGCGCGGAGTTAAAAG
rJMFF006K22+          TGTGACAATCTACAAAGGAGAAATGTTGATATATTGGAAAAAGATGCGCGGAGTTAAAAG
                      ____________________________________________________________
consensus             TGTGACAATCTACAAAGGAGAAATGTTGATATATTGGAAAAAGATGCGCGGAGTTAAAAG
 
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rJMSF013L21+          TTTTGGCATTTGCTACAGGTTAAAAGTTTTGTTTAGTTTGCTGCCCCCATATCAAAGAAG
rJMSF014L21+          TTTTGGCATTTGCTACAGGTTAAAAGTTTTGTTTAGTTTGCTGCCCCCATATCAAAGAAG
rJMSF051M19+          TTTTGGCATTTGCTACAGGTTAAAAGTTTTGTTTAGTTTGCTGCCCCCATATCAAAGAAG
rJMFF006K22+          TTTTGGCATTTGCTACAGGTTAAAAGTTTTGTTTAGTTTGCTGCCCCCATATCAAAGAAG
                      ____________________________________________________________
consensus             TTTTGGCATTTGCTACAGGTTAAAAGTTTTGTTTAGTTTGCTGCCCCCATATCAAAGAAG
 
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rJMSF013L21+          TTGATTCTTTTATAACCTGCTGGCTGCTCTTCTCCAGCGAGGAGGATTAGCTGTCGTTTT
rJMSF014L21+          TNGATTCTTTTATAACCTGCTGGCTGCTCTTCTCCAGCGAGGAGGATNNGCTGTCGTTTN
rJMSF051M19+          TTGATTCTTTTATAACCTGCTGGCTGCTCTTCTCCAGCGAGGAGGATTAGCTGTCGTTTT
rJMFF006K22+          TTGATTCTTTTATAACCTGCTGGCTGCTCTTCTCCAGCGAGGAGGATTAGCTGTCGTTTT
                      ____________________________________________________________
consensus             TTGATTCTTTTATAACCTGCTGGCTGCTCTTCTCCAGCGAGGAGGATTAGCTGTCGTTTT
 
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rJMSF013L21+          ATTTGGCTGTTCATTGGTGTAATTATTTGATCACAGGCTGGCTCAATGTAAGAGTTGTAT
rJMSF014L21+          ATTTGNCTCTTCCTTGGTGTAANTATCTGATCNCAGGCNGGCTCAATGTAAGAGTTGTAT
rJMSF051M19+          ATTTGGCTGTTCATTGGTGTAATTATTTGATCACAGGCTGGCTCAATGTAAGAGTTGTAT
rJMFF006K22+          ATTTGGCTGTTCATTGGTGTAATTATTTGATCACAGGCTGGCTCAATGTAAGAGTTGTAT
                      ____________________________________________________________
consensus             ATTTGGCTGTTCATTGGTGTAATTATTTGATCACAGGCTGGCTCAATGTAAGAGTTGTAT
 
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rJMSF013L21+          ATGGACTGCTGCACTGGCTATAACATTTGTGTTATTTTGTTATTGTATTGGTGACGGACA
rJMSF014L21+          ATGGAC                                                      
rJMSF051M19+          ATGGACTGCTGCACTGGCTATAACATTTGTGTTATTTTGTTATTGTATTGGTGACGGACA
rJMFF006K22+          ATGGACTGCTGCACTGGCTATAACATTTGTGTTATTTTGTTATTGTATTGGTGACGGACA
                      ____________________________________________________________
consensus             ATGGACTGCTGCACTGGCTATAACATTTGTGTTATTTTGTTATTGTATTGGTGACGGACA
 
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rJMSF013L21+          ATCAAGTAGGGATTAGTGTGCAAAATGTTT                              
rJMSF051M19+          ATCAAGTAGGGATTAGTGTGCAAAATGTTT                              
rJMFF006K22+          ATCAAGTAGGGATTAGTGTGCAAAATGTTTTAAATCATCTTCATTCTTATATCCCAGAAA
                      ____________________________________________________________
consensus             ATCAAGTAGGGATTAGTGTGCAAAATGTTTTAAATCATCTTCATTCTTATATCCCAGAAA