Contig 005339:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF017I10-                                               AGATTCTAAGGCGAGTCGCTTTTT
JMFF005M15-                                               AGATTCTAAGGCGAGTCGCTTTTT
                      ____________________________________________________________
consensus                                                 AGATTCTAAGGCGAGTCGCTTTTT
 
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JMFF017I10-           CGTGCTGAATAAAAATGGGGAATGTTAATGGGAGAGAAGAAGATGGCGGTGGTGGCAACA
JMFF005M15-           CGTGCTGAATAAAAATGGGGAATGTTAATGGGAGAGAAGAAGATGGCGGTGGTGGCAACA
                      ____________________________________________________________
consensus             CGTGCTGAATAAAAATGGGGAATGTTAATGGGAGAGAAGAAGATGGCGGTGGTGGCAACA
 
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JMFF017I10-           GCCCGTCCAGAGCTGAAGAGAGTGGCGCCGCCGGCGGTGGCGGTGAGGCGCCGGATAGTG
JMFF005M15-           GCCCGTCCAGAGCTGAAGAGAGTGGCGCCGCCGGCGGTGGCGGTGAGGCGCCGGATAGTG
                      ____________________________________________________________
consensus             GCCCGTCCAGAGCTGAAGAGAGTGGCGCCGCCGGCGGTGGCGGTGAGGCGCCGGATAGTG
 
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JMFF017I10-           CGCAGATGGATGGTGAGTTCATGGGTCAGTCTCCACCTTCCAGCCCTAGGGCTTCTCGTT
JMFF005M15-           CGCAGATGGATGGTGAGTTCATGGGTCAGTCTCCACCTTCCAGCCCTAGGGCTTCTCGTT
                      ____________________________________________________________
consensus             CGCAGATGGATGGTGAGTTCATGGGTCAGTCTCCACCTTCCAGCCCTAGGGCTTCTCGTT
 
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JMFF017I10-           CCCCTTTGATGTTCCGACCTCAGATGCCAGTGGTTCCTCTACAAAGACCTGATGAGTTGC
JMFF005M15-           CCCCTTTGATGTTCCGACCTCAGATGCCAGTGGTTCCTCTACAAAGACCTGATGAGTTGC
                      ____________________________________________________________
consensus             CCCCTTTGATGTTCCGACCTCAGATGCCAGTGGTTCCTCTACAAAGACCTGATGAGTTGC
 
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JMFF017I10-           ACATCCCAAACCCTCCATGGATGCAAACTGCATCTGGATATGATGACATGTATGATGAGC
JMFF005M15-           ACATCCCAAACCCTCCATGGATGCAAACTGCATCTGGATATGATGACATGTATGATGAGC
rJMFF005M15+                                     CTGCATCTGGATATGATGACATGTATGATGAGC
                      ____________________________________________________________
consensus             ACATCCCAAACCCTCCATGGATGCAAACTGCATCTGGATATGATGACATGTATGATGAGC
 
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JMFF017I10-           AAAGGGTTCCGACAGTGATAATCTGGGGCCATGGTGGCAAGGAAGTTTCTGTGGAGGGGT
JMFF005M15-           AAAGGGTTCCGACAGTGATAATCTGGGGCCATGGTGGCAAGGAAGTTTCTGTGGAGGGGT
rJMFF005M15+          AAAGGGTTCCGACAGTGATAATCTGGGGCCATGGTGGCAAGGAAGTTTCTGTGGAGGGGT
                      ____________________________________________________________
consensus             AAAGGGTTCCGACAGTGATAATCTGGGGCCATGGTGGCAAGGAAGTTTCTGTGGAGGGGT
 
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JMFF017I10-           CATGGGATGATTGGAAAACAAGGGACTTAGANGTCTAGAAACTCTTTTATCAGGAAGCCT
JMFF005M15-           CATGGGATGATTGGAAAACAAGGGACTTAGATCTCTAGAAACTCTTTTATCAGGAAGCCT
rJMFF005M15+          CATGGGATGATTGGAAAACAAGGGACTTAGATCTCTAGAAACTCTTTTATCAGGAAGCCT
                      ____________________________________________________________
consensus             CATGGGATGATTGGAAAACAAGGGACTTAGATCTCTAGAAACTCTTTTATCAGGAAGCCT
 
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JMFF017I10-           TTGCAGAGGTCAGGAAAAGATTTCACCATTATGAAAGTGCTCCCTTCAGGAGTTTATCAG
JMFF005M15-           TTGCAGAGGTCAGGAAAAGATTTCACCATTATGAAAGTGCTCCCTTCAGGAGTTTATCAG
rJMFF005M15+          TTGCAGAGGTCAGGAAAAGATTTCACCATTATGAAAGTGCTCCCTTCAGGAGTTTATCAG
                      ____________________________________________________________
consensus             TTGCAGAGGTCAGGAAAAGATTTCACCATTATGAAAGTGCTCCCTTCAGGAGTTTATCAG
 
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JMFF017I10-           TATAGGTTTATAGTTGATGGACA                                     
JMFF005M15-           TATAGGTTTATAGTTGATGGACAATGGAGGTATTCCCCTGATGTCGCGTGGATCACTGAT
rJMFF005M15+          TATAGGTTTATAGTTGATGGACAATGGAGGTATTCCCCTGATGTCGCGTGGATCACTGAT
                      ____________________________________________________________
consensus             TATAGGTTTATAGTTGATGGACAATGGAGGTATTCCCCTGATGTCGCGTGGATCACTGAT
 
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JMFF005M15-           GAAGCTGGAAATTATTACAA                                        
rJMFF005M15+          GAAGCTGGAAATTATTACAATGTCTTGGATTTGCAGGAGTATGTTCCGGAAGACATTCAG
                      ____________________________________________________________
consensus             GAAGCTGGAAATTATTACAATGTCTTGGATTTGCAGGAGTATGTTCCGGAAGACATTCAG
 
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rJMFF017I10+                          AGCCTCCTCTATCCCCGGATTCAAGTTACAGCAGCCTCCAACTG
rJMFF005M15+          AGCATCTCTGGCTTTGAGCCTCCTCTATCCCCGGATTCAAGTTACAGCAGCCTCCAACTT
                      ____________________________________________________________
consensus             AGCATCTCTGGCTTTGAGCCTCCTCTATCCCCGGATTCAAGTTACAGCAGCCTCCAACTT
 
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rJMFF017I10+          GGAGCCGAGGACTATGCCAAGGAGCCGCCTTTAGTNCCTCCCCATNTTCAGTTAACCTTG
rJMFF005M15+          GGAGCCGAGGACTATGCCAAGGAGCCGCCTTTAGTACCTCCCCATCTTCAGTTAACCTTG
                      ____________________________________________________________
consensus             GGAGCCGAGGACTATGCCAAGGAGCCGCCTTTAGTACCTCCCCATCTTCAGTTAACCTTG
 
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rJMFF017I10+          CTTAATGTTCCATCATCTCATTCAGAAATCCCGCCTCCGTTCTCGAGGCCTCAGCACGTT
rJMFF005M15+          CTTAATGTTCCATCATCTCATTCAGAAATCCCGCCTCCGTTCTCGAGGCCTCAGCACGTT
                      ____________________________________________________________
consensus             CTTAATGTTCCATCATCTCATTCAGAAATCCCGCCTCCGTTCTCGAGGCCTCAGCACGTT
 
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rJMFF017I10+          GTGCTTAATCATCTNTACATGCAGAGGGGTAGAAGCACCCCGTCAGTGGTTGCACTCGGT
rJMFF005M15+          GTGCTTAATCATCTCTACATGCAGAGGGGTAGAAGCACCCCGTCAGTGGTTGCACTCGGT
                      ____________________________________________________________
consensus             GTGCTTAATCATCTCTACATGCAGAGGGGTAGAAGCACCCCGTCAGTGGTTGCACTCGGT
 
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rJMFF017I10+          TNTACTCATAGGTTCCTCTCCAAATACGTACANCCGTGGTGCTGTACAAGTCCATAGAGA
rJMFF005M15+          TCTACTCATAGGTTCCTCTCCAAATACGTC--ACCGTGGTGCTGTACAAGTCCATAGAGA
                      ____________________________________________________________
consensus             TCTACTCATAGGTTCCTCTCCAAATACGTCCAACCGTGGTGCTGTACAAGTCCATAGAGA
 
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rJMFF017I10+          GATGAGAATCCCGAGCCTCAGCTTCGATCGATCCATCATCAT                  
rJMFF005M15+          GATGAGAATCCCGAGCCTCAGCTTCGATCGATCCATCATCATCTGCAATTGTCACACTAC
                      ____________________________________________________________
consensus             GATGAGAATCCCGAGCCTCAGCTTCGATCGATCCATCATCATCTGCAATTGTCACACTAC