Contig 005338:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005E09Sequence509002480 (2)ref|XP_009787384.1|2e-62PREDICTED: post-GPI attachment to proteins factor 3 [Nicotiana sylvestris]716005338 (2)ref|NP_001275064.1|2e-74Per1-like family protein precursor [Solanum tuberosum] gb|ABB72805.1| Per1-like
JMSF051F23Sequence656002480 (2)ref|XP_009787384.1|3e-75PREDICTED: post-GPI attachment to proteins factor 3 [Nicotiana sylvestris]757005338 (2)ref|NP_001275064.1|5e-68Per1-like family protein precursor [Solanum tuberosum] gb|ABB72805.1| Per1-like

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+               TATGAGTACACTGGCCTGTGGCACATCTATGCTATTTTATCAATGAACTCTTGGT
                      ____________________________________________________________
consensus                  TATGAGTACACTGGCCTGTGGCACATCTATGCTATTTTATCAATGAACTCTTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          TTTGGAGTGCTGTTTTTCATAGCAGAGATGTGGATTTGACTGAGAGACTAGACCATTCTT
rJMFF005E09+              GAGTGCTGTTTTTCATAGCAGAGATGTGGATTTGACTGAGAGACTAGACCATTCTT
                      ____________________________________________________________
consensus             TTTGGAGTGCTGTTTTTCATAGCAGAGATGTGGATTTGACTGAGAGACTAGACCATTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          CTGCCGTGGC--TACTTGGGTTTTCTGTTATCTTGGCTATATTGCGAACTTTCAATGTGC
rJMFF005E09+          CTGCCGTGGCTTTACTTGGGTTTTCTGTTATCTTGGCTATATTGCGAACTTTCAATGTGC
                      ____________________________________________________________
consensus             CTGCCGTGGCTTTACTTGGGTTTTCTGTTATCTTGGCTATATTGCGAACTTTCAATGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          GAGATGAGGCGCCCAGAGTAATGGTTGCTTCTCCAATTATTGCATTTGTGACAACCCATA
rJMFF005E09+          GAGATGAGGCGCCCAGAGTAATGGTTGCTTCTCCAATTATTGCATTTGTGACAACCCATA
                      ____________________________________________________________
consensus             GAGATGAGGCGCCCAGAGTAATGGTTGCTTCTCCAATTATTGCATTTGTGACAACCCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          TCTTGTATCTTAACTTCTATCAATTTGATTATGGTTTGAACCGGAAGGTGTGTTTTGGTA
rJMFF005E09+          TCTTGTATCTTAACTTCTATCAATTTGATTATGGTTTGAACCGGAAGGTGTGTTTTGGTA
                      ____________________________________________________________
consensus             TCTTGTATCTTAACTTCTATCAATTTGATTATGGTTTGAACCGGAAGGTGTGTTTTGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          TGGTGATGGCGAAGCTTACAATATGGGGTGTATGGGCAGGGGTTAGTCGTCATCCATCAC
rJMFF005E09+          TGGTGATGGCGAAGCTTACAATATGGGGTGTATGGGCAGGGGTTAGTCGTCATCCATCAC
                      ____________________________________________________________
consensus             TGGTGATGGCGAAGCTTACAATATGGGGTGTATGGGCAGGGGTTAGTCGTCATCCATCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          GGTGGAAGCTGTGGGTGGTGGTGATTGGGGGAGTTGTTGCCACCGTTGTTGAAGTATTCG
rJMFF005E09+          GGTGGAAGCTGTGGGTGGTGGTGATTGGGGGAGTTGTTGCCACCGTTGTTGAAGTATTCG
                      ____________________________________________________________
consensus             GGTGGAAGCTGTGGGTGGTGGTGATTGGGGGAGTTGTTGCCACCGTTGTTGAAGTATTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          ACTTTGCTCCATACTGGGGATACGTGGATGCCCATGCTGTTTGGCATGCCACCTGCATTC
rJMFF005E09+          ACTTTGCTCCATACTGGGGATACGTGGATGCCCATGCTGTTTGGCATGCCACCTGCATTC
                      ____________________________________________________________
consensus             ACTTTGCTCCATACTGGGGATACGTGGATGCCCATGCTGTTTGGCATGCCACCTGCATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          CTCTCACCTACTTGTTTTGGAGTTTTGTAAGGGATGACAGTGAATTCAGGACAACTAGTC
rJMFF005E09+          CTCTCACCTACTTGTTTTGGAGTTTTGTAAGGGATGACAGTGAATTCAGGACAACTAGTC
                      ____________________________________________________________
consensus             CTCTCACCTACTTGTTTTGGAGTTTTGTAAGGGATGACAGTGAATTCAGGACAACTAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          TGAGTAAGAAGGCAAAGTAGGATGGATCTGCCAAACTGTTGTGATGATGATCGTATCAAA
rJMFF005E09+          TGAGTAAGAAGGCAAAGTAGGATGGATCTGCCAAACTGTTGTGATGATGATCGTATCAAA
                      ____________________________________________________________
consensus             TGAGTAAGAAGGCAAAGTAGGATGGATCTGCCAAACTGTTGTGATGATGATCGTATCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          CTGGATCACCTTTGTATTGGGTCTTTGTTACAGTATCAGCAGACTGTCTTCCTCATTTTT
rJMFF005E09+          CTGGATCACCTTTGTATTGGGTCTTTGTTACAGTATCAGCAGACTGTCTTCCTCATTTTT
                      ____________________________________________________________
consensus             CTGGATCACCTTTGTATTGGGTCTTTGTTACAGTATCAGCAGACTGTCTTCCTCATTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          TCTTTTGGGGTTGTTTTTTCTCGCATGATTTGCCTGGGTGCTCACTCCATGCGGGTTTCT
rJMFF005E09+          TCTTTTGGGGTTGTTTTTTCTCGCATGATTTGCCTGGGTGCTCACTCCATGCGGGTTTCT
                      ____________________________________________________________
consensus             TCTTTTGGGGTTGTTTTTTCTCGCATGATTTGCCTGGGTGCTCACTCCATGCGGGTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051F23+          TTGTTCTATGTTTTAATTCCATAGGTGTAGGGCTATTAGATGCA                
rJMFF005E09+          TTGTTCTATGTTTTAATTCCATAGGTGTAGGGCTATTAGATGCATTGTTTGTGTTGCAAA
                      ____________________________________________________________
consensus             TTGTTCTATGTTTTAATTCCATAGGTGTAGGGCTATTAGATGCATTGTTTGTGTTGCAAA