| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005D11 | Sequence | 466 | 009050 (8) | ref|XP_009799456.1| | 1e-32 | PREDICTED: probable protein phosphatase 2C 5 [Nicotiana sylvestris] | 639 | 005337 (4) | ref|XP_009599009.1| | 5e-55 | PREDICTED: probable protein phosphatase 2C 5 [Nicotiana tomentosiformis] |
| JMFF016A15 | Sequence | 570 | 009050 (8) | ref|XP_009799456.1| | 2e-96 | PREDICTED: probable protein phosphatase 2C 5 [Nicotiana sylvestris] | 636 | 005337 (4) | ref|XP_009599009.1| | 3e-42 | PREDICTED: probable protein phosphatase 2C 5 [Nicotiana tomentosiformis] |
| JMFF037D15 | Sequence | 564 | 009050 (8) | ref|XP_009799456.1| | 7e-95 | PREDICTED: probable protein phosphatase 2C 5 [Nicotiana sylvestris] | 626 | 005337 (4) | ref|XP_009599009.1| | 9e-43 | PREDICTED: probable protein phosphatase 2C 5 [Nicotiana tomentosiformis] |
| JMFF039F14 | Sequence | 463 | 009050 (8) | ref|XP_009799456.1| | 5e-70 | PREDICTED: probable protein phosphatase 2C 5 [Nicotiana sylvestris] | 660 | 005337 (4) | ref|XP_009599009.1| | 3e-48 | PREDICTED: probable protein phosphatase 2C 5 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF039F14+ GGTTG
____________________________________________________________
consensus GGTTG
. : . : . : . : . : . :
rJMFF037D15+ CCGCCAACGCCTATAAAGAAACAAAGTT
rJMFF016A15+ CCGCCAACGCCTATAAAGAAACAAAGTT
rJMFF039F14+ TTGATATTATTCCTTATGACCGACCTGCCTTACCGCCAACGCCTATAAAGAAACAAAGTT
rJMFF005D11+ CCGCCAACGCCTATAAAGAAACAAAGTT
____________________________________________________________
consensus TTGATATTATTCCTTATGACCGACCTGCCTTACCGCCAACGCCTATAAAGAAACAAAGTT
. : . : . : . : . : . :
rJMFF037D15+ TGTTTAGTTCNCTCATATTTGGGNGGAAATCACATAACTTTAGGTCCAATAAGCTNTNTG
rJMFF016A15+ TGTTTAGTTCNCTCATNTTTGGGAGGAAATCNCATAACTTTAGGTCCAATAAGCTNTTTG
rJMFF039F14+ TGTTTAGTTCACTCATATTTGGGAGGAAATCNCATAACTTTAGGTCCAATAANCTNTTTG
rJMFF005D11+ TGTTTAGTTCNCTCATATTTGGGAGGAAATCACATAACTTTAGGTCCAATAAGCTTTNTG
____________________________________________________________
consensus TGTTTAGTTCACTCATATTTGGGAGGAAATCACATAACTTTAGGTCCAATAAGCTTTTTG
. : . : . : . : . : . :
rJMFF037D15+ CAGTTGGTGTTGTGGAAGAATTGTTTGAAGAGGGATCCGCAATGCTTGCAGAGCGACTGG
rJMFF016A15+ CAGTTGGTGTTGTGGAAGAATTGTTTGAAGAGGGATCCGCAATGCTTGCAGAGCGACTGG
rJMFF039F14+ CAGTTGGTGTTGTGGAAGAATTGTTTGAAGAGGGATCCGCAATGCTTGCAGAGNGACTGG
rJMFF005D11+ CAGTTGGTGTTGTGGAAGAATTGTTTGAAGAGGGATCCGCAATGCTTGCAGAGNGACTGG
____________________________________________________________
consensus CAGTTGGTGTTGTGGAAGAATTGTTTGAAGAGGGATCCGCAATGCTTGCAGAGCGACTGG
. : . : . : . : . : . :
rJMFF037D15+ GGAAGGATTTTCCTNTNGACTCAAGCTTTGGTATTTTCAGANGTGCTGTATGCCAAGCAG
rJMFF016A15+ GGAAGGATTTTCCTNTNGACTCAAGCTTTGGTATTTTCAGANGTGCTGTATGCCAAGCAG
rJMFF039F14+ GGAAGGATTTTCCTNTNGACTCAANCTTTGGTATTTTCAGANGTGCTGTATGCCAAGCAG
rJMFF005D11+ GGAAGGATTTTCCTNTNGACTCAAGCTTTGGTATTTTCAGATGTGCTGTATGCCAAGCAG
____________________________________________________________
consensus GGAAGGATTTTCCTNTNGACTCAAGCTTTGGTATTTTCAGATGTGCTGTATGCCAAGCAG
. : . : . : . : . : . :
rJMFF037D15+ ATCAGCCGCCAAGCGAGGGNTTGTNTGTTAATTCGGGTCCCTTTNTTTTNGCCTGCATAA
rJMFF016A15+ ATCANCCGCCAAGNGAGGGCTTGTNTGTTAATTNGGGTCCCTTTTTTTTNGCCTGCATAA
rJMFF039F14+ ATCAGCCGCCNAGNGAGGGNTTGTNTGTTAATTCGGGTCCCTTTTTTTTNGCCTGCATAA
rJMFF005D11+ ATCAGCCGCCNAACGAGGGNTTGTTTGTTAATTNGGGTCCC-TTTTTTTNGCCTGCATCA
____________________________________________________________
consensus ATCAGCCGCCAAGCGAGGGCTTGTTTGTTAATTCGGGTCCCTTTTTTTTNGCCTGCATAA
. : . : . : . : . : . :
rJMFF037D15+ AANCCGTGGGAAGGTCCATTCCTATGNGCAACTTGTNGTAGGAAGAAAGATGCAATGGAA
rJMFF016A15+ AANCCGTGGGAAGGTCCATTCCTATGNGCAACTTGTNGTAGGAAGAAAGATGCAATGGAA
rJMFF039F14+ AANCCGTGGGAAGGTCCATTCCTATGNGCAACTTGTNGTAGGAAGAAAGATGCAATGGAA
rJMFF005D11+ AANCCGNGGGAAGGTCCATTCCTATGNGCAACTTGTNGTAGGAAGAAAGATGCAATGGAA
____________________________________________________________
consensus AANCCGTGGGAAGGTCCATTCCTATGNGCAACTTGTNGTAGGAAGAAAGATGCAATGGAA
. : . : . : . : . : . :
rJMFF037D15+ GGAAAAAGGNTGAGTAGACCAGCGGTTATTGCATAAGTTCATTAACTTAGNGATGNTGAT
rJMFF016A15+ GGAAAAAGGNTGAGTAGACCAGCGGTTATTGCATAAGTTCATTAACTTAGNGATGNTGAT
rJMFF039F14+ GGAAAAAGGNTGAGTAGACCAGCGGTTATTGCATAAGTTCATTAACTTAGNGATGNTGAT
rJMFF005D11+ GGAAAAAGGNTGAGTAGNCCAGCGGTTNTTGCATAAGTTCATTAACTTAGNGATGNTGAT
____________________________________________________________
consensus GGAAAAAGGNTGAGTAGACCAGCGGTTATTGCATAAGTTCATTAACTTAGNGATGNTGAT
. : . : . : . : . : . :
rJMFF037D15+ ANATATATATTTTTTTGCCTGGCGNGTAAACCATGCTCGGTTTTCANCTGTTTTAGTTAC
rJMFF016A15+ ATATATATATTTTTTTGCCTGGCGNGTAAACCATGCTCGGTTTTCAGCTGTTTTAGTTAC
rJMFF039F14+ ATATATATATTTTTTTGCCTGGCGNGTAAACCATGCTNGGTTTTCAGCTGTTTTAGTTAC
rJMFF005D11+ ATATATATATTTTTTTGCCTGGNGNGTAAACCATGCTCGGTTTTCAGCTGTGTTAGTTAC
____________________________________________________________
consensus ATATATATATTTTTTTGCCTGGCGNGTAAACCATGCTCGGTTTTCAGCTGTTTTAGTTAC
. : . : . : . : . : . :
rJMFF037D15+ ANGCAATAGATTGTGTGTAAGAAANGTAGTGAGTTTTTAGGCGTTTGGTGANCCGTCAAA
rJMFF016A15+ ANGCAATAGATTGNGNGTAAGAAANGTAGNGAGTTTTTAGGCGTTTGGTGANCCGTCAAA
rJMFF039F14+ ANGCAATAGATTGNGNGTAAGAAANGTAGTGANTTTTTAGGCGTTTGGTGANCCGTCAAA
rJMFF005D11+ ANGCAATAGATTGNGNGTAAGAAANGTAGNGAGTTTTTAGGCGTTTGGTGANCCGTCAAA
____________________________________________________________
consensus ANGCAATAGATTGTGTGTAAGAAANGTAGTGAGTTTTTAGGCGTTTGGTGANCCGTCAAA
. : . : . : . : . : . :
rJMFF037D15+ NCCTTTTTTTTTTTCCCTTCTTTTGTTGATTTATTTGTGTTCGACTGACCAAGAGCGGAA
rJMFF016A15+ NCCTTTTTTTTTTTCCCTTCTTTTGTTGATTTATTTGTGTTCGACTGACCAAGAGCGGAA
rJMFF039F14+ NCCTTTTTTTTTTTCCCTTCTTTTGTTGATTTATTTGTGTTCGACTGACCAAGAGCGGAA
rJMFF005D11+ NCCTTTTTTTTTTTCCCTTCTTTTGTTGATTTATTTGTGTTCGACTGACCAAGAGCGGAA
____________________________________________________________
consensus NCCTTTTTTTTTTTCCCTTCTTTTGTTGATTTATTTGTGTTCGACTGACCAAGAGCGGAA
. : . : . : . : . : . :
rJMFF037D15+ GCTGATCTCTATATATATGATTGCTAACAGCTTGAATATATAAGTAA
rJMFF016A15+ GCTGATCTCTATATATATGATTGCTAACAGCTTGAATATATAAGTAA
rJMFF039F14+ GCTGATCTCTATATATATGATTGCTAACAGCTTGAATATATAAGTAA
rJMFF005D11+ GCTGATCTCTATATATATGATTGCTAACAGCTTGAATATGTAAGTAATGAATGAAAAAGG
____________________________________________________________
consensus GCTGATCTCTATATATATGATTGCTAACAGCTTGAATATATAAGTAATGAATGAAAAAGG