| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002N09 | Sequence | 531 | 005329 (7) | gb|ACV60360.1| | 1e-41 | RD22-like protein [Camellia sinensis] | 725 | 005329 (7) | ref|XP_009762320.1| | 3e-51 | PREDICTED: dehydration-responsive protein RD22 [Nicotiana sylvestris] |
| JMFF005G22 | Sequence | 527 | 005329 (7) | gb|ACV60360.1| | 7e-41 | RD22-like protein [Camellia sinensis] | 778 | 005329 (7) | ref|XP_009762320.1| | 1e-83 | PREDICTED: dehydration-responsive protein RD22 [Nicotiana sylvestris] |
| JMSF018D23 | Sequence | 195 | 006112 (85) | gb|ACU19496.1| | 2e-12 | unknown [Glycine max] | 712 | 005329 (7) | ref|XP_009762320.1| | 4e-72 | PREDICTED: dehydration-responsive protein RD22 [Nicotiana sylvestris] |
| JMSF031D18 | Sequence | 330 | 005329 (7) | emb|CDP20906.1| | 9e-24 | unnamed protein product [Coffea canephora] | |||||
| JMSF032D05 | Sequence | 648 | 005329 (7) | gb|AFM91994.1| | 4e-58 | RD-22 like protein, partial [Helianthus annuus] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF005G22- TCTAAGCTTTATT
JMFF002N09- ATCGTCTAAGCTTTATT
____________________________________________________________
consensus ATCGTCTAAGCTTTATT
. : . : . : . : . : . :
JMFF005G22- TTCTGCTTCAAGTAGGCTTTCATCAACATCAATGGAGTTTCAACTCCTTGGAATCTTCTC
JMFF002N09- TTCTGCTTCAAGTAGGCTTTCATCAACATCAATGGAGTTTCAACTCCTTGGAATCTTCTC
____________________________________________________________
consensus TTCTGCTTCAAGTAGGCTTTCATCAACATCAATGGAGTTTCAACTCCTTGGAATCTTCTC
. : . : . : . : . : . :
JMFF005G22- ACTTCTTTCTGTGGCTGTTGTTGCATGCCATGCAGCTTTATCACCTGAGGCTTATTGGAA
JMFF002N09- ACTTCTTTCTGTGGCTGTTGTTGCATGCCATGCAGCTTTATCACCTGAGGCTTATTGGAA
____________________________________________________________
consensus ACTTCTTTCTGTGGCTGTTGTTGCATGCCATGCAGCTTTATCACCTGAGGCTTATTGGAA
. : . : . : . : . : . :
JMFF005G22- ATCTGTGATTCCAAACACCCCCATGCCAGGAGCAGTCAAAGATTCCTTATCTTCAGCAGA
JMFF002N09- ATCTGTGATTCCAAACACCCCCATGCCAGGAGCAGTCAAAGATTCCTTATCTTCAGCAGA
____________________________________________________________
consensus ATCTGTGATTCCAAACACCCCCATGCCAGGAGCAGTCAAAGATTCCTTATCTTCAGCAGA
. : . : . : . : . : . :
JMFF005G22- GTGGGTAGAGAACAAAGGGACGGCAGTGGGCGTTGGGAAGGGCGGCGTCATCGTCGGCGG
JMFF002N09- GTGGGTAGAGAACAAAGGGACGGCAGTGGGCGTTGGGAAGGGCGGCGTCATCGTCGGCGG
____________________________________________________________
consensus GTGGGTAGAGAACAAAGGGACGGCAGTGGGCGTTGGGAAGGGCGGCGTCATCGTCGGCGG
. : . : . : . : . : . :
JMFF005G22- CAACTACCACGGCAAGCCAGTCTTCGTCGGCGTCACGCCCAGCCCGAATCCCTTCAACTA
JMFF002N09- CAACTACCACGGCAAGCCAGTCTTCGTCGGCGTCACGCCCAGCCCGAATCCCTTCAACTA
____________________________________________________________
consensus CAACTACCACGGCAAGCCAGTCTTCGTCGGCGTCACGCCCAGCCCGAATCCCTTCAACTA
. : . : . : . : . : . :
JMFF005G22- CATCTACGCCGCGACGGAGGATCAGCTCCACGACGACCCCAACGTGGCCCTTTTCTTCAA
JMFF002N09- CATCTACGCCGCGACGGAGGATCAGCTCCACGACGACCCCAACGTGGCCCTTTTCTTCAA
rJMFF005G22+ TTCAA
____________________________________________________________
consensus CATCTACGCCGCGACGGAGGATCAGCTCCACGACGACCCCAACGTGGCCCTTTTCTTCAA
. : . : . : . : . : . :
JMFF005G22- GAGGAATGACTTGCAGCAAGGCAACCAGATGAAATTGCACTTCACGAAAACCAGTAACGC
JMFF002N09- GAGGAATGACTTGCAGCAAGGCAACCAGATGAAATTGCACTTCACGAAAACCAGTAACGC
rJMFF005G22+ GAGGAATGACTTGCAGCAAGGCAACCAGATGAAATTGCACTTCACGAAAACCAGTAACGC
____________________________________________________________
consensus GAGGAATGACTTGCAGCAAGGCAACCAGATGAAATTGCACTTCACGAAAACCAGTAACGC
. : . : . : . : . : . :
JMFF005G22- CGCCACTCTCCTCCCGCGCTCGGCCGCCGGAAAAATCCCATTTTCCGCCGTGAAACTCCC
JMFF002N09- CGCCACTCTCCTCCCGCGCTCGGCCGCCGGAAAAATCCCATTTTCCGCCGTGAAACTCCC
rJMFF005G22+ CGCCACTNTCCTCCCGCGNTCGGCCGCCGGAAAAATCCCATTTTCCGCCGTGAAACTCCC
rJMSF018D23+ TCGGCCGCCGGAAAAATCCCATTTTCCGCCGTGAAACTCCC
____________________________________________________________
consensus CGCCACTCTCCTCCCGCGCTCGGCCGCCGGAAAAATCCCATTTTCCGCCGTGAAACTCCC
. : . : . : . : . : . :
JMFF005G22- CCAGATTCTCTCCCGTTTCTCTCTGTCCCC
JMFF002N09- CCAGATTCTCTCCCGTTTCTCTCTGTCCCCGGAC
rJMFF005G22+ CCAGATTCTCTCCCGTTTCTCTCTGTCCCCGGACTCGAAAGAAGCCCGGGTCATGAAGAA
rJMSF032D05+ CTCGAAAGAAGCCCGGGTCNTGAAGAA
rJMSF018D23+ CCAGATTCTCTCCCGTTTCTCTCTGTCCCCGGACTCGAAAGAAGCCCGGGTCATGAAGAA
rJMFF002N09+ TTCTCTCCCGTTTCTCTCTGTCCCCGGACTCGAAAGAAGCCCGGGTCATGAAGAA
____________________________________________________________
consensus CCAGATTCTCTCCCGTTTCTCTCTGTCCCCGGACTCGAAAGAAGCCCGGGTCATGAAGAA
. : . : . : . : . : . :
rJMFF005G22+ AACCCTCAAAGAATGCGAGGCGCCGGCAATGATGGGAGAAGAGAAGCTCTGCGCTACTTC
rJMSF032D05+ ANCCCTCAAAGAATGCGAGGCGCCGGCAATGATGGGAGAAGAGAAGCTNTGCGCTACTTC
rJMSF018D23+ AACCCTCAAAGAATGCGAGGCGCCGGCAATGATGGGAGAAGAGAAGCTCTGCGCTACTTC
rJMFF002N09+ AACCCTCAAAGAATGCGAGGCGCCGGCAATGATGGGAGAAGAGAAGCTCTGCGCTACTTC
____________________________________________________________
consensus AACCCTCAAAGAATGCGAGGCGCCGGCAATGATGGGAGAAGAGAAGCTCTGCGCTACTTC
. : . : . : . : . : . :
rJMFF005G22+ AATGGAATCAATGGTGGA-TTTCAGCGTATCTCAGCTGGGCAAAAACGTTAAGGCAATTT
rJMSF032D05+ AATGGAATCAANGGTGGA-TTTCAGCGTATCTCAGCTGGGCAAAAACGTTAAGGCAATTT
rJMSF018D23+ AATGGAATCAATGGTGGA-TTTCAGCGTATCTCAGCTGGGCAAAAACGTTAAGGCAATTT
rJMFF002N09+ AATGGAATCAATGGTGGATTTTCAGCGTATCTCAGCTGGGCAAAAACGTTAAGGCAATTT
____________________________________________________________
consensus AATGGAATCAATGGTGGA-TTTCAGCGTATCTCAGCTGGGCAAAAACGTTAAGGCAATTT
. : . : . : . : . : . :
rJMFF005G22+ CAACTGAGGGCGGGAGGACAAGGGAAGTGCAGAAATACGCAATCTCAAGGTCCAAAAGCA
rJMSF032D05+ CAACTGAGGGCGGGAGGACAAGGGAAGTGCAGAAATACGCAATCTCAAGGTCCAAAAGCA
rJMSF018D23+ CAACTGAGGGCGGGAGGACAAGGGAAGTGCAGAAATACGCAATCTCAAGGTCCAAAAGCA
rJMFF002N09+ CAACTGAGGGCGGGAGGACAAGGGAAGTGCAGAAATACGCAATCTCAAGGTCCAAAAGCA
____________________________________________________________
consensus CAACTGAGGGCGGGAGGACAAGGGAAGTGCAGAAATACGCAATCTCAAGGTCCAAAAGCA
. : . : . : . : . : . :
rJMFF005G22+ TGGGAAAAGATGGCAAAGCTGTGGTGTGCCACAAGCAGAGCTATCCCTACGCAGTTTTCT
rJMSF032D05+ TGGGAAAAGATGGCAAAGCTGTGGTGTGCCACAAGCAGAGCTATCCCTACGCAGTTTTCT
rJMSF018D23+ TGGGAAAAGATGGCAAAGCTGTGGTGTGCCACAAGCAGAGCTATCCCTACGCAGTTTTCT
rJMFF002N09+ TGGGAAAAGATGGCAAAGCTGTGGTGTGCCACAAGCAGAGCTATCCCTACGCAGTTTTCT
____________________________________________________________
consensus TGGGAAAAGATGGCAAAGCTGTGGTGTGCCACAAGCAGAGCTATCCCTACGCAGTTTTCT
. : . : . : . : . : . :
rJMFF005G22+ ACTGCCACAAGACACAAAGCACAGAGGTGTACGAGGTTTCTCTGGTCGGAGCCGACGGCG
rJMSF032D05+ ACTGCCACAAGACACAAAGCACAGAGGTGTACGAGGTTTCTCTGGTCGGAGCCGACGGCG
rJMSF031D18+ AGCCGACGGCG
rJMSF018D23+ ACTGCCACAAGACACAAAGCACAGAGGTGTACGAGGTTTCTCTGGTCGGAGCCGACGGCG
rJMFF002N09+ ACTGCCACAAGACACAAAGCACAGAGGTGTACGAGGTTTCTCTGGTCGGAGCCGACGGCG
____________________________________________________________
consensus ACTGCCACAAGACACAAAGCACAGAGGTGTACGAGGTTTCTCTGGTCGGAGCCGACGGCG
. : . : . : . : . : . :
rJMFF005G22+ CAAAGGTTAAAGCTGTAGCGGTTTGCCACAAGGATACTTCTGCCTGGAACCCTAACCACT
rJMSF032D05+ CAAAGGTTAAAGCTGTAGCGGTTTGCCACAAGGATACTTNTGCCTGGAACCCTAACCACT
rJMSF031D18+ CAAAGGTTAAAGCTGTAGCGGTTTGCCACAAGGATACTTGNGCCTGGAACCCTAACCACT
rJMSF018D23+ CAAAGGTTAAAGCTGTAGCGGTTTGCCACAAGGATACTTCTGCCTGGAACCCTAACCACT
rJMFF002N09+ CAAAGGTTAAAGCTGTAGCGGTTTGCCACAAGGATACTTCTGCCTGGAACCCTAACCACT
____________________________________________________________
consensus CAAAGGTTAAAGCTGTAGCGGTTTGCCACAAGGATACTTCTGCCTGGAACCCTAACCACT
. : . : . : . : . : . :
rJMFF005G22+ TGGCCTTCCAAGTGCTTAAGGTTAAACCTGGAACTGTCCCTGTCTGCCATTTCCTCCCAG
rJMSF032D05+ TGGCCTTCCAAGTGCTTAAGGTTAAACCTGGAACTGTCCCTGTCTGCCATTTCCTCCCAG
rJMSF031D18+ TGGCCTTCCAAGTGCTTAAGGTTAAACCTGGAACTGTCCCTGTATGCCATTTCCTCCCAG
rJMSF018D23+ TGGCCTTCCAAGTGCTTAAGGTTAAACCTGGAACTGTCCCTGTCTGCCATTTCCTCCCAG
rJMFF002N09+ TGGCCTTCCAAGTGCTTAAGGTTAAACCTGGAACTGTCCCTGTCTGCCATTTCCTCCCAG
____________________________________________________________
consensus TGGCCTTCCAAGTGCTTAAGGTTAAACCTGGAACTGTCCCTGTCTGCCATTTCCTCCCAG
. : . : . : . : . : . :
rJMFF005G22+ AGGACCACGTCGTCTGGGTTAATTAATTTCTTTCTTTATTTCTACCATGAAAACAAAAAA
rJMSF032D05+ AGGACCACGTCGTNTGGGTTAATTAATTTCCTTCTTTAT
rJMSF031D18+ AGGACCACGTCGTNTGGGTTAATTAATTTC
rJMSF018D23+ AGGACCACGTCGTCTGGGTTAATTAATTTCTTTCTTTATTTCTACCATGAAAACAAAAAA
rJMFF002N09+ AGGACCACGTCGTCTGGGTTAATTAATTTCTTTCTTTATTTCTACCATGAAAACAAAAAA
____________________________________________________________
consensus AGGACCACGTCGTCTGGGTTAATTAATTTCTTTCTTTATTTCTACCATGAAAACAAAAAA
. : . : . : . : . : . :
rJMFF005G22+ TGTCATCATTTCTTTTCAGTATTGTAAAAGTTCCTTATAAGTATATATGGTCTTTAATAT
rJMSF018D23+ TGTCATCATTTCTTTTCAGTATTGTAAAAGTTCCTTATAAGTATATATGGTCTTTAATAT
rJMFF002N09+ TGTCATCATTTCTTTTCAGTATTGTAAAAGTTCCTTATAAGTATATATGGTCTTTAATAT
____________________________________________________________
consensus TGTCATCATTTCTTTTCAGTATTGTAAAAGTTCCTTATAAGTATATATGGTCTTTAATAT
. : . : . : . : . : . :
rJMFF005G22+ TTATGATGTGTAATAATATGAATATTGTATCCATATGGAAGTGGTAATCAT
rJMSF018D23+ TTATGATGTGTAATAATATGAATATTGTATCCATATGGAAGTGGTAATCATCCTAT
rJMFF002N09+ TTATGATGTGTAATAATATGAATATTGTATCCATATGGAAGTGGTAATCATCCTATTGTT
____________________________________________________________
consensus TTATGATGTGTAATAATATGAATATTGTATCCATATGGAAGTGGTAATCATCCTATTGTT
. : . : . : . : . : . :
rJMFF002N09+ AAGGTGGACCATGGTCCTAAATTGTGTATTTTTAATATTGGAATTATGAACATCTAAAAT
____________________________________________________________
consensus AAGGTGGACCATGGTCCTAAATTGTGTATTTTTAATATTGGAATTATGAACATCTAAAAT