| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008A04 | Sequence | 571 | 005321 (4) | ref|XP_007025742.1| | 6e-32 | Uncharacterized protein TCM_029952 [Theobroma cacao] gb|EOY28364.1| Uncharacteri | 725 | 013627 (4) | ref|XP_009766485.1| | 262 | PREDICTED: uncharacterized protein LOC104217853 [Nicotiana sylvestris] |
| JMFF014F24 | Sequence | 591 | 005321 (4) | gb|KCW74645.1| | 2e-32 | hypothetical protein EUGRSUZ_E03369 [Eucalyptus grandis] | 828 | 013627 (4) | ref|XP_004232824.1| | 339 | PREDICTED: uncharacterized protein LOC101260688 [Solanum lycopersicum] ref|XP_01 |
| JMSF027P24 | Sequence | 626 | 005321 (4) | ref|XP_007025742.1| | 2e-33 | Uncharacterized protein TCM_029952 [Theobroma cacao] gb|EOY28364.1| Uncharacteri | 692 | 013627 (4) | ref|XP_009766485.1| | 242 | PREDICTED: uncharacterized protein LOC104217853 [Nicotiana sylvestris] |
| JMSF052M11 | Sequence | 655 | 005321 (4) | gb|KCW74645.1| | 2e-31 | hypothetical protein EUGRSUZ_E03369 [Eucalyptus grandis] | 927 | 013627 (4) | ref|XP_011096284.1| | 464 | PREDICTED: uncharacterized protein LOC105175522 [Sesamum indicum] ref|XP_0110962 |
This contig is upended
. : . : . : . : . : . :
JMFF014F24+ TGGCATTGCCAACAAGTTCAGAGATCCAGGACGATCAGCC-
JMSF027P24+ CAACTGGCATTGCCAACAAGTTCAGAGATCCAGGACGATCAGCCT
____________________________________________________________
consensus CAACTGGCATTGCCAACAAGTTCAGAGATCCAGGACGATCAGCCT
. : . : . : . : . : . :
JMFF014F24+ TTGATTCCAAAGCACTCAATGCCCAGAGAGGCTTTAGTTCAAGATCTGATCTAGGTTCAC
JMSF027P24+ TTGATTCCAAAGCACTCAATGCCCAGAGAGGCTTTAGTTCAAGATCTGATCTAGGTTCAC
____________________________________________________________
consensus TTGATTCCAAAGCACTCAATGCCCAGAGAGGCTTTAGTTCAAGATCTGATCTAGGTTCAC
. : . : . : . : . : . :
JMFF014F24+ TAATACCACGAGGTAAACTGTTCGACCTTTTGCTCGCCATACCAGAACGCTTCAAAGTGT
JMSF027P24+ TAATACCACGAGGTAAACTGTTCGACCTTTTGCTCGCCATACCAGAACGCTTCAAGGTGT
____________________________________________________________
consensus TAATACCACGAGGTAAACTGTTCGACCTTTTGCTCGCCATACCAGAACGCTTCAAGGTGT
. : . : . : . : . : . :
JMFF014F24+ AGGAGGGACCATATTCTGATACTGTCTCAGTCCGTTGATACTGAAAATTAGTTGTTCTAT
JMFF008A04+ CTCAGTCCGTTGATACTGAAAATTAGTTGTTCTAT
JMSF027P24+ AGGAGGGACCATATTCTGATACTGTCTCAGTCCGTTGATACTGAAAATTAGTTGTTCTAT
JMSF052M11+ CTCAGTCCGTTGATACTGAAAATTAGTTGTTCTAT
____________________________________________________________
consensus AGGAGGGACCATATTCTGATACTGTCTCAGTCCGTTGATACTGAAAATTAGTTGTTCTAT
. : . : . : . : . : . :
JMFF014F24+ ATACAATAAATAGCATTACTGTAAATATAATTCCCATAAATGGAAGCTGTTTCATCTTCA
JMFF008A04+ ATACAATAAATAGCATTACTGTAAATATAATTCCCATAAATGGAAGCTGTTTCATCTTCA
JMSF027P24+ ATACAATAAATAGCATTACTGTAAATATAATTCCCATAAATGGAAGCTGTTTCATCTTCA
JMSF052M11+ ATACAATAAATAGCATTACTGTAAATATAATTCCCATAAATGGAAGCTGTTTCATCTTCA
____________________________________________________________
consensus ATACAATAAATAGCATTACTGTAAATATAATTCCCATAAATGGAAGCTGTTTCATCTTCA
. : . : . : . : . : . :
JMFF014F24+ TTCCACATATTCCCCCTTTAAAAAAGACACTTCTTTTCTTCATTAACAGCCTCCATGATT
JMFF008A04+ TTCCACATATTCCCCCTTTAAAAAAGACACTTCTTTTCTTCATTAACAGCCTCCATGATT
JMSF027P24+ TTCCACATATTCCCCCTTTAAAAAAGACACTTCTTTTCTTCATTAACAGCCTCCATGATT
JMSF052M11+ TTCCACATATTCCCCCTTTAAAAAAGACACTTCTTTTCTTCATTAACAGCCTCCATGATT
____________________________________________________________
consensus TTCCACATATTCCCCCTTTAAAAAAGACACTTCTTTTCTTCATTAACAGCCTCCATGATT
. : . : . : . : . : . :
JMFF014F24+ CCAACTCCTTCATATGCACAAAGAGCACTGAAAGACCTTACAAGCTCTAACCCGATCCGG
JMFF008A04+ CCAATTCCTTCATATGCACAAAGAGCACTGAAAGACCTTACAAGCTCTAACCCGATCCGG
JMSF027P24+ CCAATTCCTTCATATGCACAAAGAGCACTGAAAGACCTTACAAGCTCTAACCCGATCCGG
JMSF052M11+ CCAATTCCTTCATATGCACAAAGAGCACTGAAAGACCTTACAAGCTCTAACCCGATCCGG
____________________________________________________________
consensus CCAATTCCTTCATATGCACAAAGAGCACTGAAAGACCTTACAAGCTCTAACCCGATCCGG
. : . : . : . : . : . :
JMFF014F24+ TAACCCGCCCCGACAGCGAGAAACGCGTGCCTGCACTGACATTTAGCTTGAAGAATGAGA
JMFF008A04+ TAACCCGCCCCGACAGCGAGAAACGCGTGCCTGCACTGACATTTAGCTTGAAGAATGAGA
JMSF027P24+ TAACCCGCCCCGACAGCGAGAAACGCGTGCCTGCACTGACATTTAGCTTGAAGAATGAGA
JMSF052M11+ TAACCCGCCCCGACAGCGAGAAACGCGTGCCTGCACTGACATTTAGCTTGAAGAATGAGA
____________________________________________________________
consensus TAACCCGCCCCGACAGCGAGAAACGCGTGCCTGCACTGACATTTAGCTTGAAGAATGAGA
. : . : . : . : . : . :
JMFF014F24+ TGGAAATGAACCTCTGCAGCTCCGGCGGGCACTGGGTGATGAATAGACAAAATTTGCGTG
JMFF008A04+ TGGAAATGAACCTCTGCAGCTCCGGCGGGCACTGGGTGATGAATAGACAAAATTTGCGTG
JMSF027P24+ TGGAAATGAACCTCTGCAGCTCCGGCGGGCACTGGGTGATGAATAGACAAAATTTGCGTG
JMSF052M11+ TGGAAATGAACCTCTGCAGCTCCGGCGGGCACTGGGTGATGAATAGACAAAATTTGCGTG
____________________________________________________________
consensus TGGAAATGAACCTCTGCAGCTCCGGCGGGCACTGGGTGATGAATAGACAAAATTTGCGTG
. : . : . : . : . : . :
JMFF014F24+ TTTTAGCTTAGCTTCAAGTATAAGTTGGTGCTGTCGGGAAGAGAATCGGAGAGCAAAGTG
JMFF008A04+ TTTTAGCTTAGCTTCAAGTATAAGTTGGTGCTGTCGGGAAGAGAATCGGAGAGCAAAGTG
JMSF027P24+ TTTTAGCTTAGCTTCAAGTATAAGTTGGTGCTGTCGGGAAGAGAATCGGAGAGCAAAGTG
JMSF052M11+ TTTTAGCTTAGCTTCAAGTATAAGTTGGTGCTGTCGGGAAGAGAATCGGAGAGCAAAGTG
____________________________________________________________
consensus TTTTAGCTTAGCTTCAAGTATAAGTTGGTGCTGTCGGGAAGAGAATCGGAGAGCAAAGTG
. : . : . : . : . : . :
JMFF014F24+ TAATTGTAAAT
JMFF008A04+ TAATTGTAAAT
JMSF027P24+ TAATTGTAAATACGGATAGAGAGAGAATGCTTACATTGTT
JMSF052M11+ TAATTGTAAATACGGATAGAGAGAGAATGCTTACATTGTTGTGTATATACTGTAGTTTTA
____________________________________________________________
consensus TAATTGTAAATACGGATAGAGAGAGAATGCTTACATTGTTGTGTATATACTGTAGTTTTA
. : . : . : . : . : . :
JMSF052M11+ CGAAAGTATTTCTGTCGGGGAAAAAGAGAGAGAGAGAGTGGTGGGGGAGAAGAAGAAACC
____________________________________________________________
consensus CGAAAGTATTTCTGTCGGGGAAAAAGAGAGAGAGAGAGTGGTGGGGGAGAAGAAGAAACC