Contig 005320:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005D19Sequence504005320 (7)gb|AEX26931.1|1e-66squalene synthase 1-3 [Solanum tuberosum]664006792 (11)ref|XP_009631700.1|6e-92PREDICTED: squalene synthase [Nicotiana tomentosiformis]
JMFF006J06Sequence549005320 (7)ref|XP_009594336.1|1e-88PREDICTED: squalene synthase-like [Nicotiana tomentosiformis]769006792 (11)ref|XP_009631700.1|9e-100PREDICTED: squalene synthase [Nicotiana tomentosiformis]
JMFF006P12Sequence581005320 (7)ref|XP_009594336.1|2e-92PREDICTED: squalene synthase-like [Nicotiana tomentosiformis]800006792 (11)ref|XP_009631700.1|1e-107PREDICTED: squalene synthase [Nicotiana tomentosiformis]
JMFF036F03Sequence606005320 (7)gb|AAD20626.1|7e-111squalene synthase [Capsicum annuum]590006792 (11)ref|XP_009631700.1|2e-84PREDICTED: squalene synthase [Nicotiana tomentosiformis]
JMSF022L18Sequence647005320 (7)ref|XP_009594336.1|4e-98PREDICTED: squalene synthase-like [Nicotiana tomentosiformis]790006792 (11)ref|XP_009631700.1|4e-111PREDICTED: squalene synthase [Nicotiana tomentosiformis]
JMSF046I02Sequence466005320 (7)ref|XP_009594336.1|2e-66PREDICTED: squalene synthase-like [Nicotiana tomentosiformis]657006792 (11)ref|XP_009631700.1|2e-100PREDICTED: squalene synthase [Nicotiana tomentosiformis]
JMSF052J06Sequence646005320 (7)gb|AAD20626.1|4e-113squalene synthase [Capsicum annuum]796006792 (11)ref|XP_009631700.1|1e-134PREDICTED: squalene synthase [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF022L18+                     TAATCCAACAAGCCCAGCAACATAATGACAATATTCATCATAATCATCAA
JMFF036F03+                                 CCCAGCAACATAATGACAATATTCATCATAATCATCAA
JMSF052J06+                       ATCCAACAAGCCCAGCAACATAATGACAATATTCATCATAATCATCAA
                      ____________________________________________________________
consensus                       TAATCCAACAAGCCCAGCAACATAATGACAATATTCATCATAATCATCAA
 
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JMSF022L18+           TTGTTTCGANCCTCCTTGCATATAAACTTTGCCATCCCTGCACCCATCCTCATGGTAATA
JMFF036F03+           TTGTTTCGA-CCTCCTTGCATATAAACTTTGCCATCCCTGCACCCATCCTCATGGTAATA
JMFF006J06+                                                          CCTCATGGTAATA
JMFF006P12+                                              CCCTGCACCCATCCTCATGGTAATA
JMSF052J06+           TTGTTTCGA-CCTCCTTGCATATAAACTTTGCCATCCCTGCACCCATCCTCATGGTAATA
                      ____________________________________________________________
consensus             TTGTTTCGA-CCTCCTTGCATATAAACTTTGCCATCCCTGCACCCATCCTCATGGTAATA
 
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JMSF022L18+           TCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATGATGG
JMFF036F03+           TCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATGATGG
JMFF006J06+           TCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATGATGG
JMFF005D19+                                          GTTCCAGAAAAGCAGTAGAAACATGATGG
JMFF006P12+           TCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATGATGG
JMSF052J06+           TCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATGATGG
                      ____________________________________________________________
consensus             TCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATGATGG
 
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JMSF022L18+           AACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACGGTCA
JMFF036F03+           AACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACGGTCA
JMFF006J06+           AACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACGGTCA
JMFF005D19+           AACTGGTCCATGAGAAC-TTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACGGTCA
JMSF046I02+           AACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACGGTNA
JMFF006P12+           AACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACGGTCA
JMSF052J06+           AACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACGGTCA
                      ____________________________________________________________
consensus             AACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACGGTCA
 
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JMSF022L18+           TATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCTTGTA
JMFF036F03+           TATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCTTGTA
JMFF006J06+           TATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCTTGTA
JMFF005D19+           TATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCTTGTA
JMSF046I02+           TATATGTGACGATGAAAATNTATCAGAATAGGTANTTTAACTTCTGTGGCTATGCTTGTA
JMFF006P12+           TATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCTTGTA
JMSF052J06+           TATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCTTGTA
                      ____________________________________________________________
consensus             TATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCTTGTA
 
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JMSF022L18+           TCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTCGCGA
JMFF036F03+           TCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTCGCGA
JMFF006J06+           TCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTCGCGA
JMFF005D19+           TCATCTTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTCGCGA
JMSF046I02+           TCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTCGCGA
JMFF006P12+           TCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTCGCGA
JMSF052J06+           TCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTCGCGA
                      ____________________________________________________________
consensus             TCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTCGCGA
 
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JMSF022L18+           AGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAGCATG
JMFF036F03+           AGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAGCATG
JMFF006J06+           AGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAGCATG
JMFF005D19+           AGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAGCATG
JMSF046I02+           AGCTCGATAGGGAGATGNTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAGCATG
JMFF006P12+           AGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAGCATG
JMSF052J06+           AGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAGCATG
                      ____________________________________________________________
consensus             AGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAGCATG
 
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JMSF022L18+           GTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGCCGCA
JMFF036F03+           GTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGCCGCA
JMFF006J06+           GTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGCCGCA
JMFF005D19+           GTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGCCGCA
JMSF046I02+           GTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATNTGCCTCGCCGCA
JMFF006P12+           GTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGCCGCA
JMSF052J06+           GTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGCCGCA
                      ____________________________________________________________
consensus             GTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGCCGCA
 
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JMSF022L18+           ATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAAACTC
JMFF036F03+           ATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAAACTC
JMFF006J06+           ATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAAACTC
JMFF005D19+           ATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAAACTC
JMSF046I02+           ATCTTCAGNTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAAACTC
JMFF006P12+           ATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAAACTC
JMSF052J06+           ATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAAACTC
                      ____________________________________________________________
consensus             ATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAAACTC
 
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JMSF022L18+           CCCATTTTTCACACTATTTCAGTATTCCTGTGTGTGTTCTGTAATGCAAA-GCCTGTGAG
JMFF036F03+           CCCATTTTTCACACTATTTCAGTATTCCTGTGTGTGTTCTGTAATGCAAA-GCCTGTGAG
JMFF006J06+           CCCATTTTTCACACTATTTCAGTATTCCTGTGTGTGTTCTGTAATGCAAA-GCCTGTGAG
JMFF005D19+           CCCATTTTTCACACTATTTCAGTACTCCTGTGTGTGTTCTGTAATGCAAA-GCCTGTGAG
JMSF046I02+           CCCATTTTTCACACTATTTCAGTATTCCTGTGTGTGTTCNGTAATGCAAACGCCTGTGAG
JMFF006P12+           CCCATTTTTCACACTATTTCAGTATTCCTGTGTGTGTTCTGTAATGCAAA-GCCTGTGAG
JMSF052J06+           CCCATTTTTCACACTATTTCAGTATTCCTGTGTGTGTTCTGTAATGCAAA-GCCTGTGAG
                      ____________________________________________________________
consensus             CCCATTTTTCACACTATTTCAGTATTCCTGTGTGTGTTCTGTAATGCAAA-GCCTGTGAG
 
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JMSF022L18+           CTTTTGAGAGCGGAAAATATGAATGAGTCGTTGATTTGTAAAGACGATGATCACAAT   
JMFF036F03+           CTTTTGAGAGCGGAAAATAAGAAT                                    
JMFF006J06+           CTTTTGAGAGCGGAAAATATGAATGAGTCGTTGATTTGTAAAGACGATGATCACAAT   
JMFF005D19+           CTTTTGAGAGCGGAAAATATGAATGAGTCGTTGATTTGTAAAGACGATGATCACAAT   
JMSF046I02+           CTTTTGAGAGCGGAAAATATGAA                                     
JMFF006P12+           CTTTTGAGAGCGGAAAATATGAATGAGTCGTTGATTTGTAAAGACGATGATCACAAT   
JMSF052J06+           CTTTTGAGAGCGGAAAATATGAATGAGTCGTTGATTTGTAAAGACGATGATCACAATGCC
                      ____________________________________________________________
consensus             CTTTTGAGAGCGGAAAATATGAATGAGTCGTTGATTTGTAAAGACGATGATCACAATGCC