Contig 005319:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002H04Sequence397005319 (6)ref|XP_009757024.1|7e-47PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Nicoti537005319 (6)ref|XP_009757024.1|4e-46PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Nicoti
JMSF012D22Sequence248005319 (6)ref|XP_009627381.1|6e-29PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Nicoti575005319 (6)ref|XP_009627381.1|2e-45PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Nicoti
JMSF052H21Sequence625005319 (6)ref|XP_009757024.1|9e-46PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Nicoti568005319 (6)ref|XP_009757024.1|5e-46PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Nicoti

Alignment

This contig is upended


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rJMSF012D22+                                               CGGGACGCCAACCGAATTTCCGA
rJMSF002H04+                                                         ACCGAATTTCCGA
JMSF002H04-                                                          ACCGAATTTCCGA
JMSF012D22-                                                CGGGACGCCAACCGAATTTCCGA
rJMSF052H21+                                             GGCGGGACGCCAACCGAATTTCCGA
JMSF052H21-                                                CGGGACGCCAACCGAATTTCCGA
                      ____________________________________________________________
consensus                                                GGCGGGACGCCAACCGAATTTCCGA
 
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rJMSF012D22+          AGAGCTACGCAGTGGAAAGCGAAGAGATGGCGTGGACAGGACAGCTCTCGAGAAATCTCA
rJMSF002H04+          AGAGCTACGCAGTGGAAAGCGAAGAGATGGCGTGGACAGGACAGCTCTCGAGAAATCTCA
JMSF002H04-           AGAGCTACGCAGTGGAAAGCGAAGAGATGGCGTGGACAGGACAGCTCTCGAGAAATCTCA
JMSF012D22-           AGAGCTACGCAGTGGAAAGCGAAGAGATGGCGTGGACAGGACAGCTCTCGAGAAATCTCA
rJMSF052H21+          AGAGCTACGCAGTGGAAAGCGAAGAGATGGCGTGGACAGGACAGCTCTCGAGAAATCTCA
JMSF052H21-           AGAGCTACGCAGTGGAAAGCGAAGAGATGGCGTGGACAGGACAGCTCTCGAGAAATCTCA
                      ____________________________________________________________
consensus             AGAGCTACGCAGTGGAAAGCGAAGAGATGGCGTGGACAGGACAGCTCTCGAGAAATCTCA
 
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rJMSF012D22+          AGGAGATTCGGATCTTATTCTCGCCTAATTCACCTTCCAGCGCTCCTTTGAGGGCTTTTA
rJMSF002H04+          AGGAGATTCGGATCTTATTCTCGCCTAATTCACCTTCCAGCGCTCCTTTGAGGGCTTTTA
JMSF002H04-           AGGAGATTCGGATCTTATTCTCGCCTAATTCACCTTCCAGCGCTCCTTTGAGGGCTTTTA
JMSF012D22-           AGGAGATTCGGATCTTATTCTCGCCTAATTCACCTTCCAGCGCTCCTTTGAGGGCTTTTA
rJMSF052H21+          AGGAGATTCGGATCTTATTCTCGCCTAATTCACCTTCCAGCGCTCCTTTGAGGGCTTTTA
JMSF052H21-           AGGAGATTCGGATCTTATTCTCGCCTAATTCACCTTCCAGCGCTCCTTTGAGGGCTTTTA
                      ____________________________________________________________
consensus             AGGAGATTCGGATCTTATTCTCGCCTAATTCACCTTCCAGCGCTCCTTTGAGGGCTTTTA
 
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rJMSF012D22+          TTGAGAATAACTACAAACAAATCAAGACCCATAATCCTAAATTGCCCATCCTTATCCGGG
rJMSF002H04+          TTGAGAATAACTACAAACAAATCAAGACCCATAATCCTAAATTGCCCATCCTTATCCGGG
JMSF002H04-           TTGAGAATAACTACAAACAAATCAAGACCCATAATCCTAAATTGCCCATCCTTATCCGGG
JMSF012D22-           TTGAGAATAACTACAAACAAATCAAGACCCATAATCCTAAATTGCCCATCCTTATCCGGG
rJMSF052H21+          TTGAGAATAACTACAAACAAATCAAGACCCATAATCCTAAATTGCCCATCCTTATCCGGG
JMSF052H21-           TTGAGAATAACTACAAACAAATCAAGACCCATAATCCTAAATTGCCCATCCTTATCCGGG
                      ____________________________________________________________
consensus             TTGAGAATAACTACAAACAAATCAAGACCCATAATCCTAAATTGCCCATCCTTATCCGGG
 
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rJMSF012D22+          AGGCCATCTCCATTGAGCCTCAGATTTGGGCCAGATTCGATATGGGAGTTGAAAGGGGCT
rJMSF002H04+          AGGCCAGCTCCATTGAGCCTCAGATTTGGGCCAGATTCGATATGGGAGTTGAAAGGGGCT
JMSF002H04-           AGGCCAGCTCCATTGAGCCTCAGATTTGGGCCAGATTCGATATGGGAGTTGAAAGGGGCT
JMSF012D22-           AGGCCATCTCCATTGAGCCTCAGATTTGGGCCAGATTCGATAT                 
rJMSF052H21+          AGGCCAGCTCCATTGAGCCTCAGATTTGGGCCAGATTCGATATGGGAGTTGAAAGGGGCT
JMSF052H21-           AGGCCAGCTCCATTGAGCCTCAGATTTGGGCCAGATTCGATATGGGAGTTGAAAGGGGCT
                      ____________________________________________________________
consensus             AGGCCAGCTCCATTGAGCCTCAGATTTGGGCCAGATTCGATATGGGAGTTGAAAGGGGCT
 
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rJMSF012D22+          TCCAATTAGAAGGCTTCTCAGAGCAACAGATTTCGAAAGCACTGGAAGACTTGGTGAAGG
rJMSF002H04+          TCCAATTAGAAGGCTTCTCAGAGCAACAGATTTCGAAAGCACTGGAAGACTTGGTGAAGG
JMSF002H04-           TCCAATTAGAAGGCTTCTCAGAGCAACAGATTTCGAAAGCACTGGAAGACTTGGTGAAGG
rJMSF052H21+          TCCAATTAGAAGGCTTCTCAGAGCAACAGATTTCGAAAGCACTGGAAGACTTGGTGAAGG
JMSF052H21-           TCCAATTAGAAGGCTTCTCAGAGCAACAGATTTCGAAAGCACTGGAAGACTTGGTGAAGG
                      ____________________________________________________________
consensus             TCCAATTAGAAGGCTTCTCAGAGCAACAGATTTCGAAAGCACTGGAAGACTTGGTGAAGG
 
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rJMSF012D22+          CTGGAGCATCCTGAAACTTGATTCCGTTGGACTGTTAAATGGTCTACCTTTTAATTCAGC
rJMSF002H04+          CTGGAGCATCCTGAAACTTGATTCCGTTGGACTGTTAAATGGTCTACCTTTTAATTCAGC
JMSF002H04-           CTGGAGCATCCTGAAACTTGATTCCGTTGGACTGTTAAATGGTCTACCTTTTAATTCAGC
rJMSF052H21+          CTGGAGCATCCTGAAACTTGATTCCGTTGGACTGTTAAATGGTCTACCTTTTAATTCAGC
JMSF052H21-           CTGGAGCATCCTGAAACTTGATTCCGTTGGACTGTTAAATGGTCTACCTTTTAATTCAGC
                      ____________________________________________________________
consensus             CTGGAGCATCCTGAAACTTGATTCCGTTGGACTGTTAAATGGTCTACCTTTTAATTCAGC
 
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rJMSF012D22+          GCTCGTATTGATGTCATAATGCTTGGCATTATACACTCAAATAATTATACGACCATCATC
rJMSF002H04+          GCTCGTATTGATGTCATAATGCTTGGCATTATACACTCAAATAATTATACGACCATCATC
JMSF002H04-           GCTCGTATTGATGTCATAATGC                                      
rJMSF052H21+          GCTCGTATTGATGTCATAATGCTTGGCATTATACACTCAAATAATTATACGACCATCATC
JMSF052H21-           GCTCGTATTGATGTCATAATGCTTGGCATTATACACTCAAATAATTATACGACCATCATC
                      ____________________________________________________________
consensus             GCTCGTATTGATGTCATAATGCTTGGCATTATACACTCAAATAATTATACGACCATCATC
 
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rJMSF012D22+          TATTGCTTGTTTTGTAGTCTTAAGAATATGCAGCTTTTGATGTGTCTTTAGATACAAGTG
rJMSF002H04+          TATTGCTTGTTTTGTAGTCTTAAGAATATGCAGCTTTTGATGTGTCTTTAGATACAAGTG
rJMSF052H21+          TATTGCTTGTTTTGTAGTCTTAAGAATATGCAGCTTTTGATGTGTCTTTAGATACAAGTG
JMSF052H21-           TATTGCTTGTTTTGTAGTCTTAAGAATATGCAGCTTTTGATGTGTCTTTAGATACAAGTG
                      ____________________________________________________________
consensus             TATTGCTTGTTTTGTAGTCTTAAGAATATGCAGCTTTTGATGTGTCTTTAGATACAAGTG
 
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rJMSF012D22+          CAAGGAGAGAAGTGTTTGAAGCTCTGATCTCACAATCTGCCTTCATTAATAACCTT    
rJMSF002H04+          CAAGGAGAGAAGTGTTTGAAGCTCTGATCTCACAATCTGCCT                  
rJMSF052H21+          CAAGGAGAGAAGTGTTTGAAGCTCTGATCTCACAATCTGCCTTCATTAATAACCTTTGGA
JMSF052H21-           CAAGGAGAGAAGTGTTTGAAGCTCTGATCTCACAATCTGCCTTCATTAATAACCTTTGGA
                      ____________________________________________________________
consensus             CAAGGAGAGAAGTGTTTGAAGCTCTGATCTCACAATCTGCCTTCATTAATAACCTTTGGA
 
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rJMSF052H21+          CAT                                                         
JMSF052H21-           CATTATTTTGTTTGAACTCATCTATCAAGTACCCAATTATTGTTTCTGACAAAAAAAAAA
                      ____________________________________________________________
consensus             CATTATTTTGTTTGAACTCATCTATCAAGTACCCAATTATTGTTTCTGACAAAAAAAAAA