Contig 005317:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF052C03-                                           AATTGAAAATAATTAAATTACTACAAG
                      ____________________________________________________________
consensus                                              AATTGAAAATAATTAAATTACTACAAG
 
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rJMSF052C03-          TAAAAACAAATAAATGACTAACTAAAGCTAACTGTCTATCATGATTAACCACTAGAATAA
                      ____________________________________________________________
consensus             TAAAAACAAATAAATGACTAACTAAAGCTAACTGTCTATCATGATTAACCACTAGAATAA
 
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rJMSF052C03-          AACAATTGGATAAAGAGTACAAGAAAATTAAATTAATTTTTCTTTGTGCGCTTTTGTTGA
                      ____________________________________________________________
consensus             AACAATTGGATAAAGAGTACAAGAAAATTAAATTAATTTTTCTTTGTGCGCTTTTGTTGA
 
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rJMSF052C03-          GGCTCAAAATTGTCTTCATCTTCTCCATCTTGTTTACTTGTGGTAGTCAATGAGAATGAT
                      ____________________________________________________________
consensus             GGCTCAAAATTGTCTTCATCTTCTCCATCTTGTTTACTTGTGGTAGTCAATGAGAATGAT
 
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rJMSF052C03-          TCGTGCAATGATGTTATGGTATATGATACCATGTGTTTTGCCTTGTGTATAGGATTGAGA
                      ____________________________________________________________
consensus             TCGTGCAATGATGTTATGGTATATGATACCATGTGTTTTGCCTTGTGTATAGGATTGAGA
 
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rJMSF052C03-          TCTCAATTGTATTAGTAGTCTTCATCTTGTAAGTAGTTATTGATATGTTGAATTCTTAGT
                      ____________________________________________________________
consensus             TCTCAATTGTATTAGTAGTCTTCATCTTGTAAGTAGTTATTGATATGTTGAATTCTTAGT
 
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rJMSF052C03-          TGTTGACCCTGCAAGATTCATATGTAGTTAGTCATAGGTTAATTTAATGTAAAACATGAG
                      ____________________________________________________________
consensus             TGTTGACCCTGCAAGATTCATATGTAGTTAGTCATAGGTTAATTTAATGTAAAACATGAG
 
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rJMSF052C03-          TGCTTGTGGCTGGAAGTGGAGTAGTACCTGTTGTGCTAATTACATAACTTGTTTACTGGT
                      ____________________________________________________________
consensus             TGCTTGTGGCTGGAAGTGGAGTAGTACCTGTTGTGCTAATTACATAACTTGTTTACTGGT
 
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rJMSF052C03-          TAAGAATAATAGTTGTTCAGCACATTTTCCAAACACGAATGCAACAAGGCATCCACTTCT
                      ____________________________________________________________
consensus             TAAGAATAATAGTTGTTCAGCACATTTTCCAAACACGAATGCAACAAGGCATCCACTTCT
 
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rJMSF052C03-          ATCAGTAATTTGTGATTAACTACTTTATAGTTTGTACAGAGAGGTTTGACAATGGCATTT
                      ____________________________________________________________
consensus             ATCAGTAATTTGTGATTAACTACTTTATAGTTTGTACAGAGAGGTTTGACAATGGCATTT
 
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rJMSF052C03-          GAGATGATTTACTACATGTTGGTCTGTAGAGTAAGATTATGCATTCTAATGTCATGATCA
                      ____________________________________________________________
consensus             GAGATGATTTACTACATGTTGGTCTGTAGAGTAAGATTATGCATTCTAATGTCATGATCA
 
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rJMSF052C03-          AACACTATTGATTGAACCCGAGTTTGGTGACAAATCGAAAAATCGATCACTGGAAAATAA
                      ____________________________________________________________
consensus             AACACTATTGATTGAACCCGAGTTTGGTGACAAATCGAAAAATCGATCACTGGAAAATAA
 
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rJMSF052C03-          AAGCCAAGAAAATTAAAATGAGTCCAAACAAGTTCAACAATTAGATGAGAGATCCAATAT
                      ____________________________________________________________
consensus             AAGCCAAGAAAATTAAAATGAGTCCAAACAAGTTCAACAATTAGATGAGAGATCCAATAT
 
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rJMSF052C03-          TTCCATTCTAATTCACTTATTCTTCCTGAATATGAAATACCTGCAATCCTTAAACAAGCC
JMSF052C03+                                                         TCCTTAAACAAGCC
                      ____________________________________________________________
consensus             TTCCATTCTAATTCACTTATTCTTCCTGAATATGAAATACCTGCAATCCTTAAACAAGCC
 
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rJMSF052C03-          CATGAGTACAATAGCAGAGTTCCAGCCTGAGTTCCACATATAACTTTTCTACCATTCTTC
JMSF052C03+           CATGAGTACAATAGCAGAGTTCCAGCCTGAGTTCCACATATAACTTTTCTACCATTCTTC
                      ____________________________________________________________
consensus             CATGAGTACAATAGCAGAGTTCCAGCCTGAGTTCCACATATAACTTTTCTACCATTCTTC
 
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rJMSF052C03-          ATAATCACAATTCACAACAGAAAGCAGCTCANGAGCTCATCTTCAGAACACTCTGACTGA
JMSF052C03+           ATAATCACAATTCACAACAGAAAGCAGCTCATGAGCTCATCTTCAGAACACTCTGACTGA
                      ____________________________________________________________
consensus             ATAATCACAATTCACAACAGAAAGCAGCTCATGAGCTCATCTTCAGAACACTCTGACTGA
 
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rJMSF052C03-          G                                                           
JMSF052C03+           GTTTGAACCAGCATTGACGTCGTGAGTTAGTGTAGACTTGGCTACATTAATTTTCTGTTG
                      ____________________________________________________________
consensus             GTTTGAACCAGCATTGACGTCGTGAGTTAGTGTAGACTTGGCTACATTAATTTTCTGTTG
 
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JMSF052C03+           ACGCTTTTCGTTAAGATCATCTAGCATTTGTCGTTTCTTAGCAGGAACCATTGTTGCATA
                      ____________________________________________________________
consensus             ACGCTTTTCGTTAAGATCATCTAGCATTTGTCGTTTCTTAGCAGGAACCATTGTTGCATA
 
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JMSF052C03+           CTTATGAATAACTCCCAACTGAATAACTCATTCTCTAACAGCAATCAAAGCTTAATACCA
                      ____________________________________________________________
consensus             CTTATGAATAACTCCCAACTGAATAACTCATTCTCTAACAGCAATCAAAGCTTAATACCA
 
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JMSF052C03+           GATCGAAACTAAGCTTCCCGGCCAAGTCCTTGGATGGTTTTCTGTTTGTACTGTTGCAGT
                      ____________________________________________________________
consensus             GATCGAAACTAAGCTTCCCGGCCAAGTCCTTGGATGGTTTTCTGTTTGTACTGTTGCAGT
 
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JMSF052C03+           CATAATGTGTTGGTGATGCAGCAGCAAGCAGCTGTCATTATGCTCCACCATACCCCATTC
                      ____________________________________________________________
consensus             CATAATGTGTTGGTGATGCAGCAGCAAGCAGCTGTCATTATGCTCCACCATACCCCATTC
 
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JMSF052C03+           CACCAATGACTACCCCTCATTCAATAAGTATTAGATGAGCTGATGTTGGCCTCCAACCAT
                      ____________________________________________________________
consensus             CACCAATGACTACCCCTCATTCAATAAGTATTAGATGAGCTGATGTTGGCCTCCAACCAT
 
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JMSF052C03+           CAGAAGCAATAGTTTCCCAAAGTGCCTTTACATCAATGTGTTCGTATGCGTCATACCATA
                      ____________________________________________________________
consensus             CAGAAGCAATAGTTTCCCAAAGTGCCTTTACATCAATGTGTTCGTATGCGTCATACCATA
 
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JMSF052C03+           CACACGGAGACCAAATCGGCTCCCCTCCTTTCGAATTTCGCAATTTTGCTTTAGCTGTGA
                      ____________________________________________________________
consensus             CACACGGAGACCAAATCGGCTCCCCTCCTTTCGAATTTCGCAATTTTGCTTTAGCTGTGA
 
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JMSF052C03+           TTTTCCTCGCTTGTGTTGCTGCCGTGAAAAGTACCAGTGCTTTACCATACGCTGAGGACC
                      ____________________________________________________________
consensus             TTTTCCTCGCTTGTGTTGCTGCCGTGAAAAGTACCAGTGCTTTACCATACGCTGAGGACC