Contig 005313:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017L08Sequence603005313 (3)ref|XP_009787612.1|8e-58PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Nicotiana sylvest774018012ref|XP_009621647.1|8e-59PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Nicotiana tomento
JMSF040J03Sequence678005313 (3)ref|XP_006339418.1|4e-73PREDICTED: BTB/POZ and MATH domain-containing protein 2-like isoform X1 [Solanu835001447 (2)ref|XP_009787612.1|2e-77PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Nicotiana sylvest
JMSF051F10Sequence677005313 (3)ref|XP_006339418.1|1e-56PREDICTED: BTB/POZ and MATH domain-containing protein 2-like isoform X1 [Solanu731001447 (2)ref|XP_009621647.1|2e-56PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Nicotiana tomento

Alignment

This contig is upended


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JMSF040J03+                                                    GAGGTAGGACGATGTTTCA
JMSF051F10+                                                    GAGGTAGGACGATGTTTCA
                      ____________________________________________________________
consensus                                                      GAGGTAGGACGATGTTTCA
 
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JMFF017L08+                                                           TACTTGAGTGTG
JMSF040J03+           AACATTGCTCTTCTGAAAAAGCGTTTGTAGCCCCACATACTACCGCCATACTTGAGTGTG
JMSF051F10+           AACATTGCTCTTCTGAAAAAGCGTTTGTAGCCCCACATACTACCGCGATACTTGAGTGTG
                      ____________________________________________________________
consensus             AACATTGCTCTTCTGAAAAAGCGTTTGTAGCCCCACATACTACCGCGATACTTGAGTGTG
 
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JMFF017L08+           TAAGGCCCAGTCTCCAAGACCCGTCCGAAATGGGTATGGACCTTATGCCTTTCGTTCCCG
JMSF040J03+           TAAGGCCCAGTCTCCAAGACCCGTCCGAAATGGGTATGGACCTTATGCCTTTCGTTCCCG
JMSF051F10+           TAAGGCCCAGTCTCCAAGACCCGTCCGAAATGGGTATGGACCTTATGCCTTTCGTTCCCG
                      ____________________________________________________________
consensus             TAAGGCCCAGTCTCCAAGACCCGTCCGAAATGGGTATGGACCTTATGCCTTTCGTTCCCG
 
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JMFF017L08+           CTCTGATCCATCAACGTCAATTCGAACAGCGCCCGGACGTCGGTGGCATCGCTGGCCAGC
JMSF040J03+           CTCTGATCCATCAACGTCAATTCGAACAGCGCCCGGACGTCGGTGGCATCGCTGGCCAGC
JMSF051F10+           CTCTGATCCATCAACGTCAATTCGAACAGCGCCCGGACGTCGGTGGCATCGCTGGCCAGC
                      ____________________________________________________________
consensus             CTCTGATCCATCAACGTCAATTCGAACAGCGCCCGGACGTCGGTGGCATCGCTGGCCAGC
 
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JMFF017L08+           GCAATGAAGAGCGATATATAGGAGGCATTATCCTCCGTGCTCTTGCCGTCCGGGTAAAAA
JMSF040J03+           GCAATGAAGAGCGATATATAGGAGGCATTATCCTCCGTGCTCTTGCCGTCCGGGTAAAAA
JMSF051F10+           GCAATGAAGAGCGATATATAGGAGGCATTATCCTCCGTGCTCTTGCCGTCCGGGTAAAAA
                      ____________________________________________________________
consensus             GCAATGAAGAGCGATATATAGGAGGCATTATCCTCCGTGCTCTTGCCGTCCGGGTAAAAA
 
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JMFF017L08+           TAGATCGCCCAATCATACCCTCCCACCGTGAACGTTTCAGACGCGACGTATTTCCCAATT
JMSF040J03+           TAGATCGCCCAATCATACCCTCCCACCGTGAACGTTTCAGACGCGACGTATTTCCCAATT
JMSF051F10+           TAGATCG-CCAATCATACCCTCCCACCGTGAACGTTTCAGACGCGACGTATTTCCCAATT
                      ____________________________________________________________
consensus             TAGATCGCCCAATCATACCCTCCCACCGTGAACGTTTCAGACGCGACGTATTTCCCAATT
 
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JMFF017L08+           CCCATCCCCTTCGATAAGGAATACCCCTTGATCTTGAAATCGTGGGACCCGTTGATCGTC
JMSF040J03+           CCCATCCCCTTCGATAAGGAATACCCCTTGATCTTGAAATCGTGGGACCCGTTGATCGTC
JMSF051F10+           CCCATCCCCTTCGATAAGGAATACCCCTTGATCTTGAAATCGTGGGACCCGTTGATCGTC
                      ____________________________________________________________
consensus             CCCATCCCCTTCGATAAGGAATACCCCTTGATCTTGAAATCGTGGGACCCGTTGATCGTC
 
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JMFF017L08+           TCTGTCCCGGCAGGTGGAGGTGGTGACGGTGGATTGCGAATTCGAGGACGACGACGCCTC
JMSF040J03+           TCTGT-CCGGCAGGTGGAGGTGGTGACGGTGGATTGCGAATTCGAGGACGACGACGCCTC
JMSF051F10+           TCTGT-CCGGCAGGTGGAGGTGGTGACGGTGGATTGCGAATTCGAGGACGACGACGCCTC
                      ____________________________________________________________
consensus             TCTGT-CCGGCAGGTGGAGGTGGTGACGGTGGATTGCGAATTCGAGGACGACGACGCCTC
 
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JMFF017L08+           GGGCTGTTGGTGCTCCGATTGAACCCGGAAAGTATCCATGGAGAGGTAAGATGGAAGCTT
JMSF040J03+           GGGCTGTTGGTGCTCCGATTGAACCCGGAAAGTATGCATGGAGAGGTAAGATGGAAGCTT
JMSF051F10+           GGGCTGTTGGTGCTCCGATTGAACCCGGAAAGTATCCATGGAGAGGTAAGATGGAAGCTT
                      ____________________________________________________________
consensus             GGGCTGTTGGTGCTCCGATTGAACCCGGAAAGTATCCATGGAGAGGTAAGATGGAAGCTT
 
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JMFF017L08+           TGGGGATGATGGTGAAGTTGAACAGCGAGCTGGACAGATGGAAATGGCCTGAATCGGATT
JMSF040J03+           TGGGGATGATGGTGAAGTTGAACAGCGAGCTGGACAGATGGAAATGGCCTGAATCGGATT
JMSF051F10+           TGGGGATGATGGTGAAGTTGAACAGCGAGCTGGACAGATGGAAATGGCCTGAATCGGATT
                      ____________________________________________________________
consensus             TGGGGATGATGGTGAAGTTGAACAGCGAGCTGGACAGATGGAAATGGCCTGAATCGGATT
 
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JMFF017L08+           GAAAAACAAAAAGCTAGGGTTTTGAGAATTGGGAAATTGGGGGATGATTGGTCGTATTTC
JMSF040J03+           GAAAAACAAAAAGCTAGGGTTTTGAGAATTGGGAAATTGGGGGATGATTGGTCGTATTTC
JMSF051F10+           GAAAAACAAAAAGCTAGGGTTTTGAGAATTGGGAAATTGGGGGATGATTGGTCGTATTTC
                      ____________________________________________________________
consensus             GAAAAACAAAAAGCTAGGGTTTTGAGAATTGGGAAATTGGGGGATGATTGGTCGTATTTC
 
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JMFF017L08+           GCAGACGGACCGACGGGGAAGAAGAGCGAGAGAGAAAGTCAAAAAAG             
JMSF040J03+           GCAGACGGACCGACGGGGAAGAAGAGCGAGAGAGAAAGTCAAAAAAGTAATAAGAAAA  
JMSF051F10+           GCAGACGGACCGACGGGGAAGAAGAGCGAGAGAGAAAGTCAAAAAAGTAATAAGAAAACC
                      ____________________________________________________________
consensus             GCAGACGGACCGACGGGGAAGAAGAGCGAGAGAGAAAGTCAAAAAAGTAATAAGAAAACC