Contig 005310:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014C11Sequence479005310 (4)ref|XP_006366893.1|2e-36PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X1 [So800004412 (3)ref|XP_006366894.1|4e-124PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X2 [So
JMSF041J10Sequence757005310 (4)ref|XP_006366893.1|1e-57PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X1 [So794019409ref|XP_009798414.1|2e-71PREDICTED: homogentisate solanesyltransferase, chloroplastic [Nicotiana sylvest
JMSF050J15Sequence624005310 (4)ref|XP_006366893.1|5e-67PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X1 [So783004412 (3)ref|XP_006366894.1|6e-114PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X2 [So
JMSF050O23Sequence653005310 (4)ref|XP_006366893.1|3e-78PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X1 [So648004412 (3)ref|XP_006366894.1|3e-94PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X2 [So

Alignment

This contig is upended


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JMSF041J10+                TGCAAACATTATATACTATGAACGATTTATCATGTCATCTAAATGCTACTCCTAT
                      ____________________________________________________________
consensus                  TGCAAACATTATATACTATGAACGATTTATCATGTCATCTAAATGCTACTCCTAT
 
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JMSF041J10+           GAACGAAAAACGGGCAGAACATAGATAGCTTTCCTACTCAAAAGAAAATTCAGCAGAATA
                      ____________________________________________________________
consensus             GAACGAAAAACGGGCAGAACATAGATAGCTTTCCTACTCAAAAGAAAATTCAGCAGAATA
 
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JMSF041J10+           CACAGCTTTGCAAGATGAACAATCTAACAATAATACTGAAAAGAAATAAGCTTTTAGTGT
                      ____________________________________________________________
consensus             CACAGCTTTGCAAGATGAACAATCTAACAATAATACTGAAAAGAAATAAGCTTTTAGTGT
 
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JMSF050O23+                    CTTGTCGATTCCAATGTCATATATCTGATTTATGCCCACAATATAACCATT
JMSF041J10+           TTGCTATTACTTGTCGATTCCAATGTCATATATCTGATTTATGCCCACAATATAACCATT
JMSF050J15+                    CTTGTCGATTCCAATGTCATATATCTGATTTATGCCCACAATATAACCATT
                      ____________________________________________________________
consensus             TTGCTATTACTTGTCGATTCCAATGTCATATATCTGATTTATGCCCACAATATAACCATT
 
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JMSF050O23+           GCCACATATAAGAGCAAAGAGTCCAGAAAATGCCTTGAGTAACAATGACCACCTAATCAG
JMSF014C11+                                                AGTAACAATGACCACCTAATCAG
JMSF041J10+           GCCACATATAAGAGCAAAGAGTCCAGAAAATGCCTTGAGTAACAATGACCACCTAATCAG
JMSF050J15+           GCCACATATAAGAGCAAAGAGTCCAGAAAATGCCTTGAGTAACAATGACCACCTAATCAG
                      ____________________________________________________________
consensus             GCCACATATAAGAGCAAAGAGTCCAGAAAATGCCTTGAGTAACAATGACCACCTAATCAG
 
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JMSF050O23+           ATTCGGGTTCTCAATTAGAGCTCTCGTTACCAATGAAGCAGATCCTAATGCTGTTCCGCG
JMSF014C11+           ATTCGGGTTCTCAATTAGAGCTCTCGTTACCAATGAAGCAGATCCTAATGCTGTTCCGCG
JMSF041J10+           ATTCGGGTTCTCAATTAGAGCTCTCGTTACCAATGAAGCAGATCCTAATGCTGTTCCGCG
JMSF050J15+           ATTCGGGTTCTCAATTAGAGCTCTCGTTACCAATGAAGCAGATCCTAATGCTGTTCCGCG
                      ____________________________________________________________
consensus             ATTCGGGTTCTCAATTAGAGCTCTCGTTACCAATGAAGCAGATCCTAATGCTGTTCCGCG
 
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JMSF050O23+           TATCGTATGGGGCCTCAAGAATCTCCAAAAGGCATCTTTGAACTGCGAAACTTTATCCAA
JMSF014C11+           TATCGTATGGGGCCTCAAGAATCTCCAAAAGGCATCTTTGAACTGCGAAACTTTATCCAA
JMSF041J10+           TATCGTATGGGGCCTCAAGAATCTCCAAAAGGCATCTTTGAACTGCGAAACTTTATCCAA
JMSF050J15+           TATCGTATGGGGCCTCAAGAATCTCCAAAAGGCATCTTTGAACTGCGAAACTTTATCCAA
                      ____________________________________________________________
consensus             TATCGTATGGGGCCTCAAGAATCTCCAAAAGGCATCTTTGAACTGCGAAACTTTATCCAA
 
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JMSF050O23+           AATTGGGGCAGATCCGGCATCGCCAACTTGAGAGCAGGCCCAGATGGAGCTGCGTCTATA
JMSF014C11+           AATTGGGGCAGATCCGGCATCGCCAACTTGAGAGCAGGCCCAGATGGAGCTGCGTCTATA
JMSF041J10+           AATTGGGGCAGATCCGGCATCGCCAACTTGAGAGCAGGCCCAGATGGAGCTGCGTCTATA
JMSF050J15+           AATTGGGGCAGATCCGGCATCGCCAACTTGAGAGCAGGCCCAGATGGAGCTGCGTCTATA
                      ____________________________________________________________
consensus             AATTGGGGCAGATCCGGCATCGCCAACTTGAGAGCAGGCCCAGATGGAGCTGCGTCTATA
 
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JMSF050O23+           CATTCCGAATGGAGCATTTTTCGAGAAGGTTCTGGAATTGTGAAGCCCAACTGAAGAGCG
JMSF014C11+           CATTCCGAATGGAGCATTTTTCGAGAAGGTTCTGGAATTGTGAAGCCCAACTGAAGAGCG
JMSF041J10+           CATTCCGAATGGAGCATTTTTCGAGAAGGTTCTGGAATTGTGAAGCCCAACTGAAGAGCG
JMSF050J15+           CATTCCGAATGGAGCATTTTTCGAGAAGGTTCTGGAATTGTGAAGCCCAACTGAAGAGCG
                      ____________________________________________________________
consensus             CATTCCGAATGGAGCATTTTTCGAGAAGGTTCTGGAATTGTGAAGCCCAACTGAAGAGCG
 
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JMSF050O23+           CAAGGTTTTGGAAGGTTTGAGTAGGGCCAAGTTAGCAGCTTTGCAAGTGGACCAAATGGA
JMSF014C11+           CAAGGTTTTGGAAGGTTTGAGTAGGGCCAAGTTAGCAGCTTTGCAAGTGGACCAAATGGA
JMSF041J10+           CAAGGTTTTGGAAGGTTTGAGTAGGGCCAAGTTAGCAGCTTTGCAAGTGGACCAAATGGA
JMSF050J15+           CAAGGTTTTGGAAGGTTTGAGTAGGGCCAAGTTAGCAGCTTTGCAAGTGGACCAAATGGA
                      ____________________________________________________________
consensus             CAAGGTTTTGGAAGGTTTGAGTAGGGCCAAGTTAGCAGCTTTGCAAGTGGACCAAATGGA
 
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JMSF050O23+           TAATTTTCTTGAACACGAAGGGGTTCCGTTGTAATTAAACACAGATGAAATCCGACTTGA
JMSF014C11+           TAATTTTCTTGAACACGAAGGGGTTCCGTTGTAATTAAACACAGATGAAATCCGACTTGA
JMSF041J10+           TAATTTTCTTGAACACGAAGGGGTTCCGTTGTAATTAAACACAGATGAAATCCGACTTGA
JMSF050J15+           TAATTTTCTTGAACACGAAGGGGTCCCGTTGTAATTAAACACAGATGAAATCCGACTTGA
                      ____________________________________________________________
consensus             TAATTTTCTTGAACACGAAGGGGTTCCGTTGTAATTAAACACAGATGAAATCCGACTTGA
 
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JMSF050O23+           CGAACAAGATGAGCACGCTAACTCCATCCCCAGAAACACAGAAACCAGAAATTGAGGTGA
JMSF014C11+           CGAACAAGATGAGCACGCTAACTCCATCCCCAGAAACACAGAAACCAGAAATTGAGGTGA
JMSF041J10+           CGAACAAGATGAGCACGCTAACTCCATCCCCAGAAACACAGAAACCAGAAATTGAGGTGA
JMSF050J15+           CGAACAAGATGAGCACGCTAACTCCATCCCCAGAAACACAGAAACCAGAAATTGAGGTGA
                      ____________________________________________________________
consensus             CGAACAAGATGAGCACGCTAACTCCATCCCCAGAAACACAGAAACCAGAAATTGAGGTGA
 
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JMSF050O23+           TTAGAGGCGCGGGGACGAGTAGCTTGTGAACCA                           
JMSF014C11+           TTAGAGGCGCGGGGACGAGTAGCTTGTGAACCA                           
JMSF041J10+           TTAGAGGCGCGGGGACGAGTAGCTTGTGAACCA                           
JMSF050J15+           TTAGAGGCGCGGGGACGAGTAGCTTGTGAACCAACAGCTTCAGTGGAGCTCCGGTGTCAC
                      ____________________________________________________________
consensus             TTAGAGGCGCGGGGACGAGTAGCTTGTGAACCAACAGCTTCAGTGGAGCTCCGGTGTCAC