Contig 005309:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS028D03Sequence649005309 (7)ref|XP_011041943.1|9e-93PREDICTED: probable methionine--tRNA ligase [Populus euphratica] ref|XP_01104194
JMFS110C07Sequence627005309 (7)ref|XP_004242831.1|3e-131PREDICTED: probable methionine--tRNA ligase [Solanum lycopersicum]
JMSF007K20Sequence350005309 (7)ref|XP_009779530.1|2e-20PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris]743005838 (5)ref|XP_009797160.1|6e-93PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris]
JMSF026B18Sequence638005309 (7)ref|XP_004166160.1|3e-91PREDICTED: probable methionine--tRNA ligase-like, partial [Cucumis sativus]709005838 (5)ref|XP_006361630.1|2e-95PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum]
JMSF045N21Sequence741005309 (7)ref|XP_009779530.1|4e-91PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris]711005838 (5)ref|XP_006361630.1|1e-93PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum]
JMSF048I16Sequence682005309 (7)ref|XP_011041943.1|5e-102PREDICTED: probable methionine--tRNA ligase [Populus euphratica] ref|XP_01104194799005838 (5)ref|XP_006361630.1|4e-114PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum]
JMSF050H23Sequence677005309 (7)ref|XP_004166160.1|1e-89PREDICTED: probable methionine--tRNA ligase-like, partial [Cucumis sativus]728005838 (5)ref|XP_006361630.1|9e-96PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFS110C07+                                GAAAATTACAGTATGAAAAGGCACATTGTCCTTGCCCAT
                      ____________________________________________________________
consensus                                  GAAAATTACAGTATGAAAAGGCACATTGTCCTTGCCCAT
 
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JMFS110C07+           AAATTGATACAGCTCCACATTTTCAGGATTCTTCCACCATTTCTCCCAATCAGCTGTGTA
                      ____________________________________________________________
consensus             AAATTGATACAGCTCCACATTTTCAGGATTCTTCCACCATTTCTCCCAATCAGCTGTGTA
 
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JMFS110C07+           GCATGAAGTGATGGATACATAACCAATAGGTGCATCAAACCATACATAGAAAACCTTGTC
                      ____________________________________________________________
consensus             GCATGAAGTGATGGATACATAACCAATAGGTGCATCAAACCATACATAGAAAACCTTGTC
 
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JMFS110C07+           CTTGTATTTCTCGTGTGGAACTGGAACCCCCCATTTCAAATCTCTAGTGATACACCTTGA
                      ____________________________________________________________
consensus             CTTGTATTTCTCGTGTGGAACTGGAACCCCCCATTTCAAATCTCTAGTGATACACCTTGA
 
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JMFS110C07+           CTTCAGCCCTTCTCTAAGCCATGCATGAGTTGTGTGAATAGCATTCTGACTCCATCCTCC
                      ____________________________________________________________
consensus             CTTCAGCCCTTCTCTAAGCCATGCATGAGTTGTGTGAATAGCATTCTGACTCCATCCTCC
 
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JMFS110C07+           AGCCACTGACATACTGTTTACATAGCTCTCTAATTTATCCTTCAGCAAAGGGAGCTCAAG
                      ____________________________________________________________
consensus             AGCCACTGACATACTGTTTACATAGCTCTCTAATTTATCCTTCAGCAAAGGGAGCTCAAG
 
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JMFS110C07+           GAACAAATGGTCTGTATCTTTAATGCATGGGGTGTTACGACAGACCTTGCATCTTGGCTC
                      ____________________________________________________________
consensus             GAACAAATGGTCTGTATCTTTAATGCATGGGGTGTTACGACAGACCTTGCATCTTGGCTC
 
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JMFS110C07+           CTTTAGTTCTGTAGGATTTAAAAGCTTCCCGCACTTTTCACATTGATCTCCTCGTGCAGA
JMSF045N21+                GTTCTGTAGGATTTAAAAGCTTCCCGCACTTTTCACATTGATCTCCTCGTGCAGA
JMSF048I16+                                                              TCGTGCAGA
                      ____________________________________________________________
consensus             CTTTAGTTCTGTAGGATTTAAAAGCTTCCCGCACTTTTCACATTGATCTCCTCGTGCAGA
 
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JMFS110C07+           ATCATAGTTACAACCCGGTGTTGGACAGGTACCCTCTACAAGGCGGTCAGCTAAAAACTT
JMSF045N21+           ATCATAGTTACAACCCGGTGTTGGACAGGTACCCTCTACAAGGCGGTCAGCTAA-AACTT
JMFS028D03+                                  GACAGGTACCCTCTACAAGGCGGTCAGCTAANAACTT
JMSF048I16+           ATCATAGTTACAACCCGGTGTTGGACAGGTACCCTCTACAAGGCGGTCAGCTAAAAACTT
JMSF026B18+                                              CTACAAGGCGGTCAGCTAAAAACTT
JMSF050H23+                                                    GGCGGTCAGCTAAAAACTT
                      ____________________________________________________________
consensus             ATCATAGTTACAACCCGGTGTTGGACAGGTACCCTCTACAAGGCGGTCAGCTAAAAACTT
 
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JMFS110C07+           TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
JMSF045N21+           TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
JMFS028D03+           TNTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
JMSF048I16+           TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
JMSF026B18+           TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
JMSF050H23+           TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
                      ____________________________________________________________
consensus             TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
 
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JMFS110C07+           TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGA            
JMSF045N21+           TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
JMFS028D03+           TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
JMSF048I16+           TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
JMSF026B18+           TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
JMSF050H23+           TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
                      ____________________________________________________________
consensus             TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
 
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JMSF045N21+           CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
JMFS028D03+           CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
JMSF048I16+           CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
JMSF026B18+           CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
JMSF050H23+           CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
                      ____________________________________________________________
consensus             CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
 
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JMSF045N21+           GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
JMFS028D03+           GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
JMSF048I16+           GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
JMSF026B18+           GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
JMSF050H23+           GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
                      ____________________________________________________________
consensus             GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
 
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JMSF045N21+           CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
JMFS028D03+           CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
JMSF048I16+           CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
JMSF007K20+                                                             ACCGAGCAAA
JMSF026B18+           CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
JMSF050H23+           CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
                      ____________________________________________________________
consensus             CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
 
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JMSF045N21+           CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
JMFS028D03+           CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
JMSF048I16+           CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
JMSF007K20+           CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
JMSF026B18+           CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
JMSF050H23+           CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
                      ____________________________________________________________
consensus             CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
 
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JMSF045N21+           AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
JMFS028D03+           AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
JMSF048I16+           AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
JMSF007K20+           AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAACTTT
JMSF026B18+           AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
JMSF050H23+           AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
                      ____________________________________________________________
consensus             AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
 
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JMSF045N21+           CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
JMFS028D03+           CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
JMSF048I16+           CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
JMSF007K20+           CTCGCTAACTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
JMSF026B18+           CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
JMSF050H23+           CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
                      ____________________________________________________________
consensus             CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
 
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JMSF045N21+           GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
JMFS028D03+           GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
JMSF048I16+           GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
JMSF007K20+           GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTGGTTGGCCTGG
JMSF026B18+           GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
JMSF050H23+           GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
                      ____________________________________________________________
consensus             GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
 
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JMSF045N21+           TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTTGAGATTACTGCGCCTG
JMFS028D03+           TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTT-AGATTACTGCGCCTG
JMSF048I16+           TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTTGAGATTACTGCGCCTG
JMSF007K20+           CGGCGGCGGCGGTGGAGGAGGAAAGTATATATATTAGAAGTGTTGAGATTACTGCGCCTG
JMSF026B18+           TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTTGAGATTACTGCGCCTG
JMSF050H23+           TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTTGAGATTACTGCGCCTG
                      ____________________________________________________________
consensus             TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTTGAGATTACTGCGCCTG
 
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JMSF045N21+           AGA                                                         
JMFS028D03+           AGACCTGAGTCCTG                                              
JMSF048I16+           AGACCTGAGTCCTG                                              
JMSF007K20+           AGA                                                         
JMSF026B18+           AGACCTGAGTCCTG                                              
JMSF050H23+           AGACCTGAGTCCTGAGATAGAATGAGTTGAGGACTTGAGGTAACTAATCAGAGATTCTGC
                      ____________________________________________________________
consensus             AGACCTGAGTCCTGAGATAGAATGAGTTGAGGACTTGAGGTAACTAATCAGAGATTCTGC