Contig 005308:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038D12Sequence608005308 (2)ref|XP_009593389.1|5e-50PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Nicotiana t896012695 (4)ref|XP_006361384.1|7e-145PREDICTED: C-terminal processing peptidase, chloroplastic-like [Solanum tuberos
JMSF050D02Sequence681005308 (2)ref|XP_009593389.1|8e-49PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Nicotiana t742012695 (4)gb|KEH41542.1|1e-87carboxy-terminal processing peptidase-like protein [Medicago truncatula]

Alignment

This contig is upended


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JMSF038D12+                       TTTTTTTTTTCTTCCCAGAATGCACCATTAATACTTAAATCAAACAAC
                      ____________________________________________________________
consensus                         TTTTTTTTTTCTTCCCAGAATGCACCATTAATACTTAAATCAAACAAC
 
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JMSF038D12+           TGAACAAGAGCAATTGGAGCATTATTTGTACAACAAAGGTTTAACCCATTTTCTGCAGAT
                      ____________________________________________________________
consensus             TGAACAAGAGCAATTGGAGCATTATTTGTACAACAAAGGTTTAACCCATTTTCTGCAGAT
 
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JMSF038D12+           ATTTCCATTCTTAACAATTACTGAGAAAAACTAAAGGGAAATGGAATGGACACAGTTACC
JMSF050D02+                                                  AATGGAATGGACACAGNTACC
                      ____________________________________________________________
consensus             ATTTCCATTCTTAACAATTACTGAGAAAAACTAAAGGGAAATGGAATGGACACAGTTACC
 
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JMSF038D12+           TTGATGATTAAAAGTTGGATCAACAAAAGTCTCTCTAATTAAACCCCAAGCTTCCACAAG
JMSF050D02+           TTGATGATTAAAAGTTGGATCAACAAAAGTCTCTCTAATTAAACCCCAAGCTTCCACAAG
                      ____________________________________________________________
consensus             TTGATGATTAAAAGTTGGATCAACAAAAGTCTCTCTAATTAAACCCCAAGCTTCCACAAG
 
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JMSF038D12+           TGTCCTCTGAACTGTATTCACCTCAGGAGTGTGAGACACAGGGAAAGCCACAGTGACAGT
JMSF050D02+           TGTCCTCTGAACTGTATTCACCTCAGGAGTGTGAGACACAGGGAAAGCCACAGTGACAGT
                      ____________________________________________________________
consensus             TGTCCTCTGAACTGTATTCACCTCAGGAGTGTGAGACACAGGGAAAGCCACAGTGACAGT
 
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JMSF038D12+           CTCAGCTAAGACTGGAAAATTAGAACACACAGACACTGCAGCTGCAAATCCAAGCACTCC
JMSF050D02+           CTCAGCTAAGACTGGAAAATTAGAACACACAGACACTGCAGCTGCAAATCCAAGCACTCC
                      ____________________________________________________________
consensus             CTCAGCTAAGACTGGAAAATTAGAACACACAGACACTGCAGCTGCAAATCCAAGCACTCC
 
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JMSF038D12+           CCTAGCAACCCATTTGAATAAATTTTCACTTTCTTCACTGGGGCTTTCATTCTTTAGCCG
JMSF050D02+           CCTAGCAACCCATTTGAATAAATTTTCACTTTCTTCACTGGGGCTTTCATTCTTTAGCCG
                      ____________________________________________________________
consensus             CCTAGCAACCCATTTGAATAAATTTTCACTTTCTTCACTGGGGCTTTCATTCTTTAGCCG
 
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JMSF038D12+           GGGAGTGGACTTCCTCTTGTCCAAAGCTTGGGGAACTACCAATCTAGAGCCTGGTTTTCT
JMSF050D02+           GGGAGTGGACTTCCTCTTGTCCAAAGCTTGGGGAACTACCAATCTAGAGCCTGGTTTTCT
                      ____________________________________________________________
consensus             GGGAGTGGACTTCCTCTTGTCCAAAGCTTGGGGAACTACCAATCTAGAGCCTGGTTTTCT
 
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JMSF038D12+           ACCATGATTAAAGCAAGAAAACCCGGAAGAAAAATATGGTTTTGAAGTGGGTCTAATAAG
JMSF050D02+           ACCATGATTAAAGCAAGAAAACCCGGAAGAAAAATATGGTTTTGAAGTGGGTCTAATAAG
                      ____________________________________________________________
consensus             ACCATGATTAAAGCAAGAAAACCCGGAAGAAAAATATGGTTTTGAAGTGGGTCTAATAAG
 
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JMSF038D12+           AGGCTTAGACATTGAATAGTGGCCAAGATCGAGCTTTGAGCAGAGAGTTTCCATGACTCC
JMSF050D02+           AGGCTTAAACATTGAATAGTGGCCAAGATCGAGCTTTGAGCAGAGAGTTTCCATGACTCC
                      ____________________________________________________________
consensus             AGGCTTAGACATTGAATAGTGGCCAAGATCGAGCTTTGAGCAGAGAGTTTCCATGACTCC
 
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JMSF038D12+           CGGGAATGGGAAAAGTTCC                                         
JMSF050D02+           CGGGAATGGGAAAAGTTCCAAACTTTTTGGGTATCAATAAAGTTAAGATGAATGGCCTAA
                      ____________________________________________________________
consensus             CGGGAATGGGAAAAGTTCCAAACTTTTTGGGTATCAATAAAGTTAAGATGAATGGCCTAA
 
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JMSF050D02+           CATTAGGAACTAGAAAGCTGTGTAAAACTAAAAATTTCCTGGGTTTTGGCTGCTTATGCA
                      ____________________________________________________________
consensus             CATTAGGAACTAGAAAGCTGTGTAAAACTAAAAATTTCCTGGGTTTTGGCTGCTTATGCA
 
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JMSF050D02+           CGCAGTGACTCGGTGATTCCAATTTGGTGGCGGCAAGGCGGTGAGGCGGTAGGGCCTACG
                      ____________________________________________________________
consensus             CGCAGTGACTCGGTGATTCCAATTTGGTGGCGGCAAGGCGGTGAGGCGGTAGGGCCTACG
 
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JMSF050D02+           TGAATCTTCGCGTCTGTGGTGGTTATCTCTGTTGCGTATCAGAGTATCTGCGTGTCAACC
                      ____________________________________________________________
consensus             TGAATCTTCGCGTCTGTGGTGGTTATCTCTGTTGCGTATCAGAGTATCTGCGTGTCAACC