Contig 005306:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017B03Sequence282005306 (2)745008623 (3)ref|XP_004245932.1|2e-104PREDICTED: plastidal glycolate/glycerate translocator 1, chloroplastic [Solanum
JMSF050A08Sequence669005306 (2)ref|XP_002282496.1|1e-74PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Vitis vinifer735017275ref|XP_009789537.1|3e-27PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Nicotiana syl

Alignment

This contig is upended


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JMSF050A08+                                                              ACCATCCAA
                      ____________________________________________________________
consensus                                                                ACCATCCAA
 
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JMSF050A08+           GACATAATATGTTAGCATCGGTGTAACTTTCTCAGGACTATCCCTCTTTTGCTTGCGGAA
                      ____________________________________________________________
consensus             GACATAATATGTTAGCATCGGTGTAACTTTCTCAGGACTATCCCTCTTTTGCTTGCGGAA
 
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JMSF050A08+           GACAAAAAGATGGGGCTCCATAACTTCGCTAAGCCAGTACTCATTGCCCGTCATTTTGGA
                      ____________________________________________________________
consensus             GACAAAAAGATGGGGCTCCATAACTTCGCTAAGCCAGTACTCATTGCCCGTCATTTTGGA
 
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JMSF050A08+           CAGTTGAGAGATATCGAGGGGGTGAATGGAGCGCATGCGGAGCTGTTCATTATTGCAGGT
                      ____________________________________________________________
consensus             CAGTTGAGAGATATCGAGGGGGTGAATGGAGCGCATGCGGAGCTGTTCATTATTGCAGGT
 
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JMSF050A08+           CCAGTCATAGAAAGGGGAAAGCGCGAAGTAATCGAACACCAAGTTTCTATCCAGCGGGTA
                      ____________________________________________________________
consensus             CCAGTCATAGAAAGGGGAAAGCGCGAAGTAATCGAACACCAAGTTTCTATCCAGCGGGTA
 
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JMSF050A08+           GGTGTTCAGCCACAGCTGATCCCTGAAGCATATCCCGGTCATATCCGTCCCAGGCGGCTG
                      ____________________________________________________________
consensus             GGTGTTCAGCCACAGCTGATCCCTGAAGCATATCCCGGTCATATCCGTCCCAGGCGGCTG
 
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JMSF050A08+           CGGCGGCGCCGGTACGCCTCCATCTAAATTCGGATTCCCCATCGCCGCGTTAGGCGGAAC
                      ____________________________________________________________
consensus             CGGCGGCGCCGGTACGCCTCCATCTAAATTCGGATTCCCCATCGCCGCGTTAGGCGGAAC
 
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JMSF017B03+                              GTAGATACGCGTTTCCTTTAACCGAGGTTATAACAGTTGGA
JMSF050A08+           CATCGGCGTATTCGCCATTGTAGATACGCGTTTCCTTTAACCGAGGTTATAACAGTTGGA
                      ____________________________________________________________
consensus             CATCGGCGTATTCGCCATTGTAGATACGCGTTTCCTTTAACCGAGGTTATAACAGTTGGA
 
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JMSF017B03+           GTGAATTTCAGCAGTGATTGTTGATTGCCTCTTGTATTAATTTATTCGGTGAACGCTCGC
JMSF050A08+           GTGAATTTCAGCAGTGATTGTTGATTGCCTCTTGTATTAATTTATTCGGTGAACGCTCGC
                      ____________________________________________________________
consensus             GTGAATTTCAGCAGTGATTGTTGATTGCCTCTTGTATTAATTTATTCGGTGAACGCTCGC
 
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JMSF017B03+           AACGGTGTTTCAACGGTTATTCGCCGGATAATTTGTAACCCAGTTAGCCTGAAACTCCCG
JMSF050A08+           AACGGTGTTTCAACGGTTATTCGCCGGATAATTTGTAACCCAGTTAGCCTGAAACTCCCG
                      ____________________________________________________________
consensus             AACGGTGTTTCAACGGTTATTCGCCGGATAATTTGTAACCCAGTTAGCCTGAAACTCCCG
 
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JMSF017B03+           GCGATTGAAACATAATCACTTTTTCATTTTCCTTTGTGTCTGTAGCTTCTGCTGCTTATG
JMSF050A08+           GCGATTGAAACATAATCACTTTTTCATTTTCCTTTGTGTCTGTAGCTTCTGCTGCTTATG
                      ____________________________________________________________
consensus             GCGATTGAAACATAATCACTTTTTCATTTTCCTTTGTGTCTGTAGCTTCTGCTGCTTATG
 
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JMSF017B03+           CCATGGCTGCAGATCTGATACTGTTACCAAATACCAAAGAGGAGACGAAGGCCGTGC   
JMSF050A08+           CCATGGCTGCAGATCTGATACTGTTACCAAATACCAAAGAGGAGACGAAGGCCGTGCGTC
                      ____________________________________________________________
consensus             CCATGGCTGCAGATCTGATACTGTTACCAAATACCAAAGAGGAGACGAAGGCCGTGCGTC