| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF024F03 | Sequence | 560 | 005305 (3) | ref|XP_009797124.1| | 3e-35 | PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chl | 490 | 002149 (15) | gb|ABR25654.1| | 4e-42 | synaptic glycoprotein sc2 [Oryza sativa Indica Group] |
| JMSF034E22 | Sequence | 687 | 005305 (3) | ref|XP_006355235.1| | 2e-91 | PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chl | 571 | 002920 (2) | emb|CDP18075.1| | 2e-65 | unnamed protein product [Coffea canephora] |
| JMSF049O21 | Sequence | 689 | 005305 (3) | ref|XP_006355235.1| | 6e-56 | PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chl | 663 | 002920 (2) | emb|CDP18075.1| | 4e-95 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF034E22+ CCGAAGATATTTTGCTGAAAACAGCTTCAAGAGGTTGGCCCAATTCCTC
____________________________________________________________
consensus CCGAAGATATTTTGCTGAAAACAGCTTCAAGAGGTTGGCCCAATTCCTC
. : . : . : . : . : . :
JMSF034E22+ TTCTATGATGTTGAAAGCAACCTGATTAGGAAAAGGAGGAACATCATCCTGAAGAATGCA
____________________________________________________________
consensus TTCTATGATGTTGAAAGCAACCTGATTAGGAAAAGGAGGAACATCATCCTGAAGAATGCA
. : . : . : . : . : . :
JMSF034E22+ AAGTTCATTCATGTAATCTTGTCTAATAATATCAGGCCTATTTGCAAGCACCTGTCCAGC
JMSF049O21+ ATCAGGCCTATTTGCAAGCACCTGTCCAGC
____________________________________________________________
consensus AAGTTCATTCATGTAATCTTGTCTAATAATATCAGGCCTATTTGCAAGCACCTGTCCAGC
. : . : . : . : . : . :
JMSF034E22+ TTTGATGAAAGAAGGCCCCAAGTCACACAAGAGTTGCCTAAGCTGGCGAGCACGGAAAGG
JMSF049O21+ TTTGATGAAAGAAGGCCCCAAGTTACACAAGAGTTGCCTAAGCTGGCGAGCACGGAAAGG
____________________________________________________________
consensus TTTGATGAAAGAAGGCCCCAAGTTACACAAGAGTTGCCTAAGCTGGCGAGCACGGAAAGG
. : . : . : . : . : . :
JMSF034E22+ AACAACTTCTTGATCACGACCCACAACATAATCATACACTAAACTCGTCCAATAAAGCCC
JMSF024F03+ CTTCTTGATCACGACCCACAACATAATCATACACTAAACTCGTCCAATAAAGCCC
JMSF049O21+ AACAACTTCTTGATCACGACCCACAACATAATCATACACTAAACTCGTCCAATAAAGCCC
____________________________________________________________
consensus AACAACTTCTTGATCACGACCCACAACATAATCATACACTAAACTCGTCCAATAAAGCCC
. : . : . : . : . : . :
JMSF034E22+ CAAATTCCATACTATCTCTACCCCTCTACCAATCAAGGATAATATTGCCCCCCTTGACTC
JMSF024F03+ CAAATTCCATACTATCTCTACCCCTCTACCAATCAAGGATAATATTGCCCCCCTTGACTC
JMSF049O21+ CAAATTCCATACTATCCCTACCCCTCTACCAATCAAGGATAATATTGCCCCCCTTGACTC
____________________________________________________________
consensus CAAATTCCATACTATCTCTACCCCTCTACCAATCAAGGATAATATTGCCCCCCTTGACTC
. : . : . : . : . : . :
JMSF034E22+ CAAAACCTTATTTTTCACTGATTCGGGGGAGTATTTGCGGAAGGGAATGCAAACTCCACG
JMSF024F03+ CAAAACCTTATTTTTCACTGATTCGGGGGAGTATTNGCGGAAGGGAATGCAAACTCCACG
JMSF049O21+ CAAAACCTTATTTTTCACTGATTCGGGGGAGTATTTGCGGAAGGGAATGCAAACTCCACG
____________________________________________________________
consensus CAAAACCTTATTTTTCACTGATTCGGGGGAGTATTTGCGGAAGGGAATGCAAACTCCACG
. : . : . : . : . : . :
JMSF034E22+ CTCGATATCGAGCTGGTCGAGAGCGCTGTTGGTGAAAGGATCTTTGGGTTCCAATTTTAG
JMSF024F03+ CTCGATATCGAGCTGGTCGAGAGCGCTGTTGGTGAAAGGATCTTTGGGTTCCAATTTTAG
JMSF049O21+ CTCGATATCGAGCTGGTCGAGAGCGCTGTTGGTGAAAGGATCTTTGGGTTCCAATTTTAG
____________________________________________________________
consensus CTCGATATCGAGCTGGTCGAGAGCGCTGTTGGTGAAAGGATCTTTGGGTTCCAATTTTAG
. : . : . : . : . : . :
JMSF034E22+ TGATTGGATGGATTCCTGAGTGGAAGAGGTGTTGACTGCGTAGATACTGGGCGACGAGAA
JMSF024F03+ TGATTGGATGGATTCCTGAGTGGAAGAGGTGTTGACTGCGTAGATACTGGGCGACGAGAA
JMSF049O21+ TGATTGGATGGATTCCTGAGTGGAAGAGGTGTTGACTGCGTAGATACTGGGCGACGAGAA
____________________________________________________________
consensus TGATTGGATGGATTCCTGAGTGGAAGAGGTGTTGACTGCGTAGATACTGGGCGACGAGAA
. : . : . : . : . : . :
JMSF034E22+ GCGCTTCGGGGGCTTAACGGGACCAAAAAGTAGCTTCTTGCTTTTTCTCTTGCATTGAAT
JMSF024F03+ GCGCTTCGGGGGCTTAACGGGACCAAAAAGTAGCTTCTTGCTTTTTCTCTTGCATTGAAT
JMSF049O21+ GCGCTTCGGGGGCTTAACGGGACCAAAAAGTAGCTTCTTGCTTTTTCTCTTGCATTGAAT
____________________________________________________________
consensus GCGCTTCGGGGGCTTAACGGGACCAAAAAGTAGCTTCTTGCTTTTTCTCTTGCATTGAAT
. : . : . : . : . : . :
JMSF034E22+ TTCAGTGGAAGGTAATGAAGAAGAAGAAGAAGAAGAGTAGAAGCAGCTTGAGCTGCAAAC
JMSF024F03+ TTCAGTGNAAGGTAATGAAGAAGAAGAAGAAGAAGAGTAGAAGCAGCTTGAGCTGCAAAC
JMSF049O21+ TTCAGTGGAAGGTAATGAAGAAGAAGAAGAAGAAGAGTAGAAGCAGCTTGAGCTGCAAAC
____________________________________________________________
consensus TTCAGTGGAAGGTAATGAAGAAGAAGAAGAAGAAGAGTAGAAGCAGCTTGAGCTGCAAAC
. : . : . : . : . : . :
JMSF034E22+ CACCACTCCCATGGCTCCTCTCTCTCTGCCTTGTCTT
JMSF024F03+ CACCACTCCCATGGCTCCTCTCTCTCTGCCTTGTCTTAGTTAGAATATGGAAGGAAATGA
JMSF049O21+ CACCACTCCCATGGCTCCTCTCTCTCTGCCTTGTCTTAGTTAGAATATGGAAGGAAATGA
____________________________________________________________
consensus CACCACTCCCATGGCTCCTCTCTCTCTGCCTTGTCTTAGTTAGAATATGGAAGGAAATGA
. : . : . : . : . : . :
JMSF024F03+ AAAGAGGAAAATTGGGAGACGCATAAAGGGAAGGGGATGATGAGCGGTACTGTTTGTGGT
JMSF049O21+ AAAGAGGAAAATTGGGAGACGCATAAAGGGAAGGGGATGATGAGCGGTA-TGTTTGTGGT
____________________________________________________________
consensus AAAGAGGAAAATTGGGAGACGCATAAAGGGAAGGGGATGATGAGCGGTACTGTTTGTGGT
. : . : . : . : . : . :
JMSF024F03+ GGANTTCTNTCAGCTTCCACT
JMSF049O21+ GGATTTCTTTCAGCTTCCACTTGTGCAAATCGAGTGGCTTCAGCTTCAGATTGGCTGCCC
____________________________________________________________
consensus GGATTTCTTTCAGCTTCCACTTGTGCAAATCGAGTGGCTTCAGCTTCAGATTGGCTGCCC