Contig 005303:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF044O06-                                                                  AAAT
rJMSF049H23-                                                                   AAT
                      ____________________________________________________________
consensus                                                                     AAAT
 
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rJMSF044O06-          CATCGACACTTCTTATTACAAGCGCACTAAACCACATCTAATCATATAAACAATACAATT
rJMSF049H23-          CATCGACACCTCTTATTACAAGCGCACTAAACCACATCTAATCATATAAACAATACAATT
                      ____________________________________________________________
consensus             CATCGACACTTCTTATTACAAGCGCACTAAACCACATCTAATCATATAAACAATACAATT
 
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rJMSF044O06-          ATTACCCACCCACCCTTAATTTTCATCAGCAAAGAAGAAAATGAAGGCCGCAGCAATTTA
rJMSF049H23-          ATTACCCACCCACCCTTAATTTTCATCAGCAAAGAAGAAAATGAAGGCCGCAGCAATTTA
                      ____________________________________________________________
consensus             ATTACCCACCCACCCTTAATTTTCATCAGCAAAGAAGAAAATGAAGGCCGCAGCAATTTA
 
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rJMSF044O06-          ATCTGTTATTATCCACCTCACATGCAGTCCCCACGAACTTCACTACCCACAGATTCCATT
rJMSF049H23-          ATCTGTTATTATCCACCTCACATGCAGTCCCCACGAACTTCACTACCCACAGATTCCATT
                      ____________________________________________________________
consensus             ATCTGTTATTATCCACCTCACATGCAGTCCCCACGAACTTCACTACCCACAGATTCCATT
 
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rJMSF044O06-          ATTCGGATGTCACATCCTAGCTAGCCCTTTATTTATTTCTTCATACCAAATAATACTAAT
rJMSF049H23-          ATTCGGATGTCACATCCTAGCTAGCCCTTTATTTATTTCTTCATACCAAATAATACTAAT
                      ____________________________________________________________
consensus             ATTCGGATGTCACATCCTAGCTAGCCCTTTATTTATTTCTTCATACCAAATAATACTAAT
 
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rJMSF044O06-          AATAGTAACCTAACTTATGTACATCATCCCAACCCCGCCGGAATTTCGACGACTTTAATA
rJMSF049H23-          AATAGTAACCTAACTTATGTACATCATCCCAACCCCGCCGGAATTTCGACGACTTTAATA
                      ____________________________________________________________
consensus             AATAGTAACCTAACTTATGTACATCATCCCAACCCCGCCGGAATTTCGACGACTTTAATA
 
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rJMSF044O06-          AGTCCACTCTTGTGGTAGTTGCATCTCCTGGTCGATCGTTGCCGGTTGCGTTTCGACGTC
rJMSF049H23-          AGTCCACTCTTGTGGTAGTTGCATCTCCTGGTCGATCGTTGCCGGTTGCGTTTCGACGTC
                      ____________________________________________________________
consensus             AGTCCACTCTTGTGGTAGTTGCATCTCCTGGTCGATCGTTGCCGGTTGCGTTTCGACGTC
 
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rJMSF044O06-          CGAATGTTGTTCTATTTGTGGAAGCGAGTCTTCTATTTTATTCCCCGTAGCAAACTGTAC
rJMSF049H23-          CGAATGTTGTTCTATTTGTGGAAGCGAGTCTTCTATTTTATTCCCCGTAGCAAACTGTAC
                      ____________________________________________________________
consensus             CGAATGTTGTTCTATTTGTGGAAGCGAGTCTTCTATTTTATTCCCCGTAGCAAACTGTAC
 
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rJMSF044O06-          TGGGCGATTACTAGGAGAGGCAGCATAGGTGTTTGATTGTGACTTGGC-TTCCATAGTGC
rJMSF049H23-          TGGGCGATTACTAGGAGAGGCAGCATAGGTGTTTGATTGTGACTTGGC-TTCCATAGTGC
JMSF044O06+                       AGGAGAGGCAGCATAGGTGTTTGATTGTGACTTGGCTTTCCATAGTGC
                      ____________________________________________________________
consensus             TGGGCGATTACTAGGAGAGGCAGCATAGGTGTTTGATTGTGACTTGGC-TTCCATAGTGC
 
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rJMSF044O06-          TGAAGTGGTGCTGTAGAGCTTGCAATACTCTTGTAGGTATTAAGACCGTAGAGCACCCAG
rJMSF049H23-          TGAAGTGGTGCTGTAGAGCTTGCAATACTCTTGTAGGTATTAAGACCGTAGAGCACCCAG
JMSF044O06+           TGAAGTGGTGCTGTAGAGCTTGCAATACTCTTGTAGGTATTAAGACCGTAGAGCACCCAG
                      ____________________________________________________________
consensus             TGAAGTGGTGCTGTAGAGCTTGCAATACTCTTGTAGGTATTAAGACCGTAGAGCACCCAG
 
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rJMSF044O06-          TTTTCTTCTTGGGTTCGGGTTGGCTGTGGTAGTTGCAACCACGGGGAATGAAAACGCCTG
rJMSF049H23-          TTTTCTTCTTGGGTTCGGGTTGGCTGTGGTAGTTGCAACCACGGGGAATGAAAACGCCTG
JMSF044O06+           TTTTCTTCTTGGGTTCGGGTTGGCTGTGGTAGTTGCAACCACGGGGAATGAAAACGCCTG
                      ____________________________________________________________
consensus             TTTTCTTCTTGGGTTCGGGTTGGCTGTGGTAGTTGCAACCACGGGGAATGAAAACGCCTG
 
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rJMSF044O06-          TCCCACTACTGGAAGCACCGGTTACGT                                 
rJMSF049H23-          TCCCACTACTGGAAGCACCGGTTACGTAGCCGGAGCCTCCGAGGAAAACCGCCTGCATAC
JMSF044O06+           TCCCACTACTGGAAGCACCGGTTACGTAGCCGGAGCCTCCGAGGAAAACCGCCTGCATAC
                      ____________________________________________________________
consensus             TCCCACTACTGGAAGCACCGGTTACGTAGCCGGAGCCTCCGAGGAAAACCGCCTGCATAC
 
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rJMSF049H23-          CCGACCCGCTTCTCAACGTGT                                       
JMSF044O06+           CCGACCCGCTTCTCAACGTGTGGGCCCTTCCACCGCCATGTCCGTTTCCTCTTCTTCTGC
JMFN011G18+                                                    CCGTTTCCTCTTCTTCTGC
                      ____________________________________________________________
consensus             CCGACCCGCTTCTCAACGTGTGGGCCCTTCCACCGCCATGTCCGTTTCCTCTTCTTCTGC
 
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JMSF044O06+           CTTTCTTCGGCATGTGGTGCTCCGCCTCCGCTGCGTGCTCAACTCGTGGATGAATCGACT
JMFN011G18+           CTTTCTTCGGCATGTGGTGCTCCGCCTCCGCTGCGTGCTCAACTCGTGGATGAATCGACT
JMSF049H23+               CTTCGGCATGTGGTGCTCCGCCTCCGCTGCGTGCTCAACTCGTGGATGAATCGACT
                      ____________________________________________________________
consensus             CTTTCTTCGGCATGTGGTGCTCCGCCTCCGCTGCGTGCTCAACTCGTGGATGAATCGACT
 
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JMSF044O06+           CGGTTTTCGCGACTCGTCTTCCTCGCGGAGTAGGATTACTCTGTTTTCTCAAGGATGATT
JMFN011G18+           CGGTTTTCGCGACTCGTCTTCCTCGCGGAGTAGGATTACTCTGTTTTCTCAAGGATGATT
JMSF049H23+           CGGTTTTCGCGACTCGTCTTCCTCGCGGAGTAGGATTACTCTGTTTTCTCAAGGATGATT
                      ____________________________________________________________
consensus             CGGTTTTCGCGACTCGTCTTCCTCGCGGAGTAGGATTACTCTGTTTTCTCAAGGATGATT
 
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JMSF044O06+           GGTCTCTCATCGTGTAAACTTCGATTGGTCTCATCGCGTAATTTGCAGAGTCTGAATTCG
JMFN011G18+           GGTCTCTCATCGTGTAAACTTCGATTGGTCTAATCGCGTAATTTGCAGAGTCTGAATTCG
JMSF049H23+           GGTCTCTCATCGTGTAAACTTCGATTGGTCTCATCGCGTAATTTGCAGAGTCTGAATTCG
                      ____________________________________________________________
consensus             GGTCTCTCATCGTGTAAACTTCGATTGGTCTCATCGCGTAATTTGCAGAGTCTGAATTCG
 
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JMSF044O06+           CAGATGAGTTCGCAAGTTCCTCCTTGAATTTGGGAGAGTGTTCATGATCTTCAACCAAAA
JMFN011G18+           CAGATGAGTTCGCAAGTTCCTCCTTGAATTTGGGAGAGTGTTCATGATCTTCAACCAAAA
JMSF049H23+           CAGATGAGTTCGCAAGTTCCTCCTTGAATTTGGGAGAGTGTTCATGATCTTCAACCAAAA
                      ____________________________________________________________
consensus             CAGATGAGTTCGCAAGTTCCTCCTTGAATTTGGGAGAGTGTTCATGATCTTCAACCAAAA
 
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JMSF044O06+           TATTCGGCTCATCATCTTCATCCTGAAGCATATAACCGGCCATCTGGCGAGTCAACTCAG
JMFN011G18+           TATTCGGCTCATCATCTTCATCCTGAAGCATATAACCGGCCATCTGGCGAGTCAACTCAG
JMSF049H23+           TATTCGGCTCATCATCTTCATCCTGAAGCATATAACCGGCCATCTGGCGAGTCAACTCAG
                      ____________________________________________________________
consensus             TATTCGGCTCATCATCTTCATCCTGAAGCATATAACCGGCCATCTGGCGAGTCAACTCAG
 
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JMSF044O06+           CGAGGAAATCCTCGCCTTCGTCGTCGTCGCTCTCTGTTTCAGTTCTGGTGGAGCCGACGG
JMFN011G18+           CGAGGAAATCCTCGCCTTCGTCGTCGTCGCTCTCTGTTTCAGTTCTGGTGGAGCCGACGG
JMSF049H23+           CGAGGAAATCCTCGCCTTCGTCGTCGTCGCTCTCTGTTTCAGTTCTGGTGGAGCCGACGG
                      ____________________________________________________________
consensus             CGAGGAAATCCTCGCCTTCGTCGTCGTCGCTCTCTGTTTCAGTTCTGGTGGAGCCGACGG
 
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JMSF044O06+           AACCGAAGGGCGTGCTGAGGCCGGAAGACGAGTTCTCGGAGCCGAACAGGGAATCGGCGA
JMFN011G18+           AACCGAAGGGCGTGCTGAGGCCGGAAGACGAGTTCTCGGAGCCGAACAGGGAATCGGCGA
JMSF049H23+           AACCGAAGGGCGTGCTGAGGCCGGAAGACGAGTTCTCGGAGCCGAACAGGGAATCGGCGA
                      ____________________________________________________________
consensus             AACCGAAGGGCGTGCTGAGGCCGGAAGACGAGTTCTCGGAGCCGAACAGGGAATCGGCGA
 
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JMSF044O06+           CCCAAATAGGAGGAGGAAGGAGAGGAGGCTCTTTACCATGCAGGTCTGAAGAAGAATCCA
JMFN011G18+           CCCAAATAGGAGGAGGAAGGAGAGGAGGCTCTTTACCATGCAGGTCTGAAGAAGAATCCA
JMSF049H23+           CCCAAATAGGAGGAGGAAGGAGAGGAGGCTCTTTACCATGCAGGTCTGAAGAAGAATCCA
                      ____________________________________________________________
consensus             CCCAAATAGGAGGAGGAAGGAGAGGAGGCTCTTTACCATGCAGGTCTGAAGAAGAATCCA
 
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JMSF044O06+           TGGAGGCCCAAAGGAATGAT                                        
JMFN011G18+           TGGAGGCCCAAAGGAATGATTCGAGGAGAGTGGAGATTCCTAGCGGTTTTTGATAGGGAA
JMSF049H23+           TGGAGGCCCAAAGGAATGATTCGAGGAGAGTGGAGATTCCTAGCGGTTTTTGATAGGGAA
                      ____________________________________________________________
consensus             TGGAGGCCCAAAGGAATGATTCGAGGAGAGTGGAGATTCCTAGCGGTTTTTGATAGGGAA
 
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JMFN011G18+           GAGAGGAGGCGAGATGAGATGAGAGGAGATGAGAGGAGATGA                  
JMSF049H23+           GAGAGGAGGCGAGATGAGATGAGAGGAGATGAGAGGAGATGAGATAACAATGAAAAAACC
                      ____________________________________________________________
consensus             GAGAGGAGGCGAGATGAGATGAGAGGAGATGAGAGGAGATGAGATAACAATGAAAAAACC