Contig 005301:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002A23Sequence290005301 (3)ref|XP_006356504.1|8e-26PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos725001279 (4)ref|XP_006356504.1|1e-93PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos
JMSF006O15Sequence209005301 (3)ref|XP_006356504.1|7e-10PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos386000235 (181)gb|ADL57411.1|4e-71chloroplast LHCII type I chlorophyll a-b binding precursor protein [Ipomoea nil
JMSF049D16Sequence653005301 (3)ref|XP_006356504.1|8e-96PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos734001279 (4)ref|XP_006356504.1|9e-93PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos

Alignment

This contig is upended


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JMSF049D16+                  AGAACGAGCTTTTGGCTTTATTCTCTTGTGGGTCTTGTGTATCAAATTGGTCG
                      ____________________________________________________________
consensus                    AGAACGAGCTTTTGGCTTTATTCTCTTGTGGGTCTTGTGTATCAAATTGGTCG
 
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JMSF049D16+           GCTCCAAAAGCTTGCACACAAGGTTTGTGCCCACCTTGAGCTAGTCCCACGAGATACAGA
                      ____________________________________________________________
consensus             GCTCCAAAAGCTTGCACACAAGGTTTGTGCCCACCTTGAGCTAGTCCCACGAGATACAGA
 
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JMSF049D16+           GAAAAGAAAAAGAAGATAATTTCAAACTGTGGAGGAGAACATGTGTCATTATTTGTAGCA
                      ____________________________________________________________
consensus             GAAAAGAAAAAGAAGATAATTTCAAACTGTGGAGGAGAACATGTGTCATTATTTGTAGCA
 
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JMSF049D16+           TCTTGGCAGTTTGACGACTTGGAATGAAGTACGGCTGATAGGGTTAGGAAGCCCAAGCCC
                      ____________________________________________________________
consensus             TCTTGGCAGTTTGACGACTTGGAATGAAGTACGGCTGATAGGGTTAGGAAGCCCAAGCCC
 
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JMSF049D16+           AGGATATATAGCACAGAGGCAGATATTATGGTCCGGTATCTACCCAGAAAAGAGCCGGCC
                      ____________________________________________________________
consensus             AGGATATATAGCACAGAGGCAGATATTATGGTCCGGTATCTACCCAGAAAAGAGCCGGCC
 
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JMSF049D16+           ACAAATGCTCCCAATAGCGGCAAAAGCGACGCCGTTCCCGTCCAAGCATTCACATTCTCC
                      ____________________________________________________________
consensus             ACAAATGCTCCCAATAGCGGCAAAAGCGACGCCGTTCCCGTCCAAGCATTCACATTCTCC
 
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JMSF002A23+                  TCGCCGTGGACTGGCCGAGCGGCCCAGTCAGGTAGCTTATCAGGTTCAAACCT
JMSF049D16+           GCCGCCGTCGCCGTGGACTGGCCGAGCGGCCCAGTCAGGTAGCTTATCAGGTTCAAACCT
                      ____________________________________________________________
consensus             GCCGCCGTCGCCGTGGACTGGCCGAGCGGCCCAGTCAGGTAGCTTATCAGGTTCAAACCT
 
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JMSF002A23+           ATCCCATAGTACGCAAATCTCTCCGCCATCTCCACGCCTATGATGAAATAAGCTGATCTC
JMSF006O15+                                       TCTCCACGCCTATGATGAAATAAGCTGATCTC
JMSF049D16+           ATCCCATAGTACGCAAATCTCTCCGCCATCTCCACGCCTATGATGAAATAAGCTGATCTC
                      ____________________________________________________________
consensus             ATCCCATAGTACGCAAATCTCTCCGCCATCTCCACGCCTATGATGAAATAAGCTGATCTC
 
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JMSF002A23+           CAGCGACCCGATCTGGATCGGATGGCAGGTCGGCCCTTGTAATCGACGGAACCATCAACG
JMSF006O15+           CAGCGACCCGATCTGGATCGGATGGCAGGTCGGCCCTTGTAATCGACGGAACCATCAACG
JMSF049D16+           CAGCGACCCGATCTGGATCGGATGGCAGGTCGGCCCTTGTAATCGACGGAACCATCAACG
                      ____________________________________________________________
consensus             CAGCGACCCGATCTGGATCGGATGGCAGGTCGGCCCTTGTAATCGACGGAACCATCAACG
 
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JMSF002A23+           GAATCGTGTTGCAGAAATTGGGTTTCGGCGTCTGGAAGGTCCATTGTTGCTCCGGTGATG
JMSF006O15+           GAATCGTGTTGCAGAAATTTGGTTTCGGCGTCTGGAAGGTCCATTGTTGCTCCGGTGATG
JMSF049D16+           GAATCGTGTTGCAGAAATTGGGTTTCGGCGTCTGGAAGGTCCATTGTTGCTCCGGTGATG
                      ____________________________________________________________
consensus             GAATCGTGTTGCAGAAATTGGGTTTCGGCGTCTGGAAGGTCCATTGTTGCTCCGGTGATG
 
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JMSF002A23+           GCCATAGCCCATAGAGACGAGACCGCCACCACGCCCCTGCGGCACAAATCCACGA     
JMSF006O15+           GCCATAGCCCATAGAGACGAGACCGCCACCACGCCCCTGCGGCACAAATCCACGA     
JMSF049D16+           GCCATAGCCCATAGAGACGAGACCGCCACCACGCCCCTGCGGCACAAATCCACGATAACC
                      ____________________________________________________________
consensus             GCCATAGCCCATAGAGACGAGACCGCCACCACGCCCCTGCGGCACAAATCCACGATAACC