Contig 005292:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048I22-                                                             ACAAGTTAC
                      ____________________________________________________________
consensus                                                                ACAAGTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044J11-                             AGGCAATANTACAAATTTCATATNNTTCNCACTTACGNCGG
rJMSF048I22-          AATATATTATGACATGCACAGGCAATAATACAAATTTCATATAATTCTCACTTACAACGG
                      ____________________________________________________________
consensus             AATATATTATGACATGCACAGGCAATAATACAAATTTCATATAATTCTCACTTACGACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044J11-          ATTNNCGCANAACAACATATTCATAATANTCCAACTTTAATNNTGGCTTCTCCNCGCACG
rJMSF048I22-          ATTAACGCAAAACAACATATTCATAATAATCCAACTTTAATTTTGGCTTCTCCACGCACG
                      ____________________________________________________________
consensus             ATTAACGCAAAACAACATATTCATAATAATCCAACTTTAATTTTGGCTTCTCCACGCACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044J11-          NTNCCCTTTNNCCCAATTTTANTTGGCANCTCTNNTGGNTGAAGCTTATAATATACTATT
rJMSF048I22-          TTTCCCTTTAACCCAATTTTATTTGGTAACTCTCATGGTTGAAGCTTATAATATACTATT
                      ____________________________________________________________
consensus             TTTCCCTTTAACCCAATTTTATTTGGTAACTCTCATGGTTGAAGCTTATAATATACTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044J11-          NTTGCNANTNGGATGNNTGGANCTCAGTTGACTTTCCCACANTTCTTCCTAANTTGGCCC
rJMSF048I22-          ATTGCAATTTGGATGCATGGAACTCAATTGACTTTCCCACAATTCTTCCTAATTTGGCCC
                      ____________________________________________________________
consensus             ATTGCAATTTGGATGCATGGAACTCAGTTGACTTTCCCACAATTCTTCCTAATTTGGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044J11-          NTNGNGCCCGTGAGAGGACCAAGANTACTCATTTTCAGCNTTGCANCTGCAANATCNTTG
rJMSF048I22-          CTTGTGCCCGTGAGAGGACCAAGATTACTCATTTTCAGCATTGCATCTGCAAAATCTTTG
                      ____________________________________________________________
consensus             CTTGTGCCCGTGAGAGGACCAAGATTACTCATTTTCAGCATTGCATCTGCAAAATCTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044J11-          GCAAAGATGAGAGGATT                                           
rJMSF048I22-          GCAAAAATGAAAGGATTAAAGGTATACGTCTCGACTATGGAATCTGTAGAGCCTCCATTA
                      ____________________________________________________________
consensus             GCAAAGATGAGAGGATTAAAGGTATACGTCTCGACTATGGAATCTGTAGAGCCTCCATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048I22-          TAGAGTGCTTGGTCAGAATGAAAGAGTCCCTTTTGCTTCAACAAGTCCCTGAAATAACAA
                      ____________________________________________________________
consensus             TAGAGTGCTTGGTCAGAATGAAAGAGTCCCTTTTGCTTCAACAAGTCCCTGAAATAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048I22-          TTGTCAAACGTGGTCGGAGTGGGATCCATTGGAGTAAGGTTGTTGTCACCTCCGCTTTGA
JMSF044J11+                                                                GCTTTGA
                      ____________________________________________________________
consensus             TTGTCAAACGTGGTCGGAGTGGGATCCATTGGAGTAAGGTTGTTGTCACCTCCGCTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048I22-          GGACATATTGCTTGCAACGCTGATGCAAATAAGGGATCTATGTTGGTGTCGTTGTAGATT
JMSF044J11+           GGACATATTGCTTGCAACGCTGATGCAAATAAGGGATCTATGTTGGTGTCGTTGTAGATT
                      ____________________________________________________________
consensus             GGACATATTGCTTGCAACGCTGATGCAAATAAGGGATCTATGTTGGTGTCGTTGTAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048I22-          CGAGCTCGAAATGTTGTGCACCTAGCTTTCCCTATTGTGTGGCCACCTGAGAGAGCAACC
JMSF044J11+           CGAGCTCGAAATGTTGTGCACCTAGCTTTCCCTATTGTGTGGCCACCTGAGAGAGCAACC
JMSF048I22+                                                          TGAGAGAGCAACC
                      ____________________________________________________________
consensus             CGAGCTCGAAATGTTGTGCACCTAGCTTTCCCTATTGTGTGGCCACCTGAGAGAGCAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048I22-          AATTCCCTAGCACTAAAACCGTGTTTGGAGAAAGAAGATATGAGTTGGTTGAG       
JMSF044J11+           AATTCCCTAGCACTAAAACCGTGTTTGGAGAAAGAAGATATGAGTTGGTTGAGATTAAGA
JMSF048I22+           AATTCCCTAGCACTAAAACCGTGTTTGGAGAAAGAAGATATGAGTTGGTTGAGATTAAGA
                      ____________________________________________________________
consensus             AATTCCCTAGCACTAAAACCGTGTTTGGAGAAAGAAGATATGAGTTGGTTGAGATTAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J11+           GTTGGTGCAGGAAGGTTGTTGTCAGCTGCACTTTTACTTGCTGTGGTTGAGTCTCGTCTC
JMSF048I22+           GTTGGTGCAGGAAGGTTGTTGTCAGCTGCACTTTTACTTGCTGTGGTTGAGTCTCGTCTC
                      ____________________________________________________________
consensus             GTTGGTGCAGGAAGGTTGTTGTCAGCTGCACTTTTACTTGCTGTGGTTGAGTCTCGTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J11+           CCTAATAAAACATTCCAACTAGGACCGCCAAGCACAACAGTTGAGTCTCGAGCAGCAACA
JMSF048I22+           CCTAATAAAACATTCCAACTAGGACCGCCAAGCACAACAGTTGAGTCTCGAGCAGCAACA
                      ____________________________________________________________
consensus             CCTAATAAAACATTCCAACTAGGACCGCCAAGCACAACAGTTGAGTCTCGAGCAGCAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J11+           GCTACAATATCAGCACAAGATACAACGCCGGGACAACAACTCTCAAGTTTAGCTTTAATG
JMSF048I22+           GCTACAATATCAGCACAAGATACAACGCCGGGACAACAACTCTCAAGTTTAGCTTTAATG
                      ____________________________________________________________
consensus             GCTACAATATCAGCACAAGATACAACGCCGGGACAACAACTCTCAAGTTTAGCTTTAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J11+           TTGTCAATCACATTAAGTCCTCTTATTGAGTTGTTATTTGCTTTTGAAGTTTGTTCCCCG
JMSF048I22+           TTGTCAATCACATTAAGTCCTCTTATTGAGTTGTTATTTGCTTTTGAAGTTTGTTCCCCG
                      ____________________________________________________________
consensus             TTGTCAATCACATTAAGTCCTCTTATTGAGTTGTTATTTGCTTTTGAAGTTTGTTCCCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J11+           GTGAAAGTTGGTGTATCATCCAACAAAATCGATCCATCACAGCCATTGACAAAGCAGTCA
JMSF048I22+           GTGAAAGTTGGTGTATCATCCAACAAAATCGATCCATCACAGCCATTGACAAAGCAGTCA
                      ____________________________________________________________
consensus             GTGAAAGTTGGTGTATCATCCAACAAAATCGATCCATCACAGCCATTGACAAAGCAGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J11+           TGGAAATGGAGACGAAGCAAGGATGCTCCCATTCGAGTCTCAGCCTGAATAGCAGATATC
JMSF048I22+           TGGAAATGGAGACGAAGCAAGGATGCTCCCATTCGAGTCTCAGCCTGAATAGCAGATATC
                      ____________________________________________________________
consensus             TGGAAATGGAGACGAAGCAAGGATGCTCCCATTCGAGTCTCAGCCTGAATAGCAGATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J11+           ACACCCGATTTGATAATGGAAAGAGCGTTGGGACAAGATTTTGAGTAAAAATTTGCAGAC
JMSF048I22+           ACACCCGATTTGATAATGGAAAGAGCGTTGGGACAAGATTTTGAGTAAAAATTTGCAGAC
                      ____________________________________________________________
consensus             ACACCCGATTTGATAATGGAAAGAGCGTTGGGACAAGATTTTGAGTAAAAATTTGCAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J11+           AATTGAGCATAACTCAACCCACAGAGAATCAAGAAGAGTAGACATGAGAGTATGAATGGA
JMSF048I22+           AATTGAGCAGAACTCAACCCACAGAGAATCAAGAAGAGTAGACATGAGAGTATGAATGGA
                      ____________________________________________________________
consensus             AATTGAGCATAACTCAACCCACAGAGAATCAAGAAGAGTAGACATGAGAGTATGAATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J11+           GAAGGAATTGTAGTCTTCATCATGACTACTATTGTATGAGAAAGGAGAAAGGAAAGAAAG
JMSF048I22+           GAAGGAATTGTAGTCTTCATCATGACTACTATTGTATGAGAAAGGAGAAAGGAAAGAAAG
                      ____________________________________________________________
consensus             GAAGGAATTGTAGTCTTCATCATGACTACTATTGTATGAGAAAGGAGAAAGGAAAGAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044J11+           TTTTCCAAGTTTCAACTTAGAAACAAAGAAAGAAATGGTGGCTTGGCTTGTGGCCT    
JMSF048I22+           TTTTCCAAGTTTCAACTTAGAAACAAAGAAAGAAATGGTGGCTTGGCTTGTGGCCTAGTC
                      ____________________________________________________________
consensus             TTTTCCAAGTTTCAACTTAGAAACAAAGAAAGAAATGGTGGCTTGGCTTGTGGCCTAGTC