Contig 005290:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030D05Sequence566005290 (2)ref|XP_002524955.1|2e-38ubiquitin-protein ligase, putative [Ricinus communis] gb|EEF37452.1| ubiquitin-p655006881 (2)ref|XP_006341792.1|4e-60PREDICTED: U-box domain-containing protein 4-like [Solanum tuberosum]
JMSF048C21Sequence733005290 (2)ref|XP_010314681.1|6e-48PREDICTED: U-box domain-containing protein 4-like [Solanum lycopersicum] ref|XP_732006881 (2)gb|KDO79033.1|8e-73hypothetical protein CISIN_1g003348mg [Citrus sinensis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048C21+                                                          ATCCATAGACTTG
                      ____________________________________________________________
consensus                                                            ATCCATAGACTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048C21+           ATTTTCAGTACACAGTTCTCAAGAGATGTCAAACTTGATTCAGCAGGAAGACACCAATCA
                      ____________________________________________________________
consensus             ATTTTCAGTACACAGTTCTCAAGAGATGTCAAACTTGATTCAGCAGGAAGACACCAATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030D05+                                         CTGAAAGCTCGAACTTTTGCAATTAATGAT
JMSF048C21+           GAAGATACAAGTAGCTCAACAATCTTCAGGCTGAAAGCTCGAACTTTTGCAATTAATGAT
                      ____________________________________________________________
consensus             GAAGATACAAGTAGCTCAACAATCTTCAGGCTGAAAGCTCGAACTTTTGCAATTAATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030D05+           TCAGCTTGCAGAACAAAATAAACTTTACTGCTCAACAGCTGCCAGGTCTGAAACAGCTCC
JMSF048C21+           TCAGCTTGCAGAACAAAATAAACTTTACTGCTCAACAGCTGCCAGGTCTGAAACAGCTCC
                      ____________________________________________________________
consensus             TCAGCTTGCAGAACAAAATAAACTTTACTGCTCAACAGCTGCCAGGTCTGAAACAGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030D05+           CTCAGCTCATCAACTGAATGGCCCAGTCCTGAAAATACCTTTTGAAGCAGTTCATCAGAA
JMSF048C21+           CTCAGCTCATCAACTGAATGGCCCAGTCCTGAAAATACCTTTTGAAGCAGTTCATCAGAA
                      ____________________________________________________________
consensus             CTCAGCTCATCAACTGAATGGCCCAGTCCTGAAAATACCTTTTGAAGCAGTTCATCAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030D05+           GCTATTTCAGCGTCAACAATACCACTGAGAATTGGCTGTAGGAGCTTCAGTATATCTTCA
JMSF048C21+           GCTATTTCAGCGTCAACAATACCACTGAGAATTGGCTGTAGGAGCTTCAGTATATCTTCA
                      ____________________________________________________________
consensus             GCTATTTCAGCGTCAACAATACCACTGAGAATTGGCTGTAGGAGCTTCAGTATATCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030D05+           GTCTTCTGGTAATATTTATGCACCAGTTCAGAATTTATGTTCTCCAGTGATGATAAATGG
JMSF048C21+           GTCTTCTGGTAATATTTATGCACCAGTTCAGAATTTATGTTCTCCAGTGATGATAAATGG
                      ____________________________________________________________
consensus             GTCTTCTGGTAATATTTATGCACCAGTTCAGAATTTATGTTCTCCAGTGATGATAAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030D05+           AAAAAGCTGGAGATGTTGTTGAGAAGCACTTTTAGTAATAAAATCTCCATTCCTCCTTAT
JMSF048C21+           AAAAAGCTGGAGATGTTGTTGAGAAGCACTTTTAGTAATAAAATCTCCATTCCTCCTTAT
                      ____________________________________________________________
consensus             AAAAAGCTGGAGATGTTGTTGAGAAGCACTTTTAGTAATAAAATCTCCATTCCTCCTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030D05+           CAGTAATAGCCTCGGCTTCAATTAGTCATGTAATTTTCTCATGTCGGAGAGACCCAACAA
JMSF048C21+           CAGTAATAGCCTCGGCTTCAATTAGTCATGTAATTTTCTCATGTCGGAGAGACCCAACAA
                      ____________________________________________________________
consensus             CAGTAATAGCCTCGGCTTCAATTAGTCATGTAATTTTCTCATGTCGGAGAGACCCAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030D05+           GCCAAGTAAAACTTCCACAGTACTGTTTACCATTTATCTGGCATCAACCGTCAAAAACAT
JMSF048C21+           GCCAAGTAAAACTTCCACAGTACTGTTTACCATTTATCTGGCATCAACCGTCAAAAACAT
                      ____________________________________________________________
consensus             GCCAAGTAAAACTTCCACAGTACTGTTTACCATTTATCTGGCATCAACCGTCAAAAACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030D05+           CATGGCAGCAAACCCTGTGTCCAACAATTGAGTAATCGGTGAAGTCGGATATACCGATCG
JMSF048C21+           CATGGCAGCAAACCCTGTGTCCAACAATTGAGTAATCGGTGAAGTCGGATATACCGATCG
                      ____________________________________________________________
consensus             CATGGCAGCAAACCCTGTGTCCAACAATTGAGTAATCGGTGAAGTCGGATATACCGATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030D05+           AAGAGGAAAGACTCTCGCAGAGTTAAATCGGAGAATTTGAAACACAGAAAACAC      
JMSF048C21+           AAGAGGAAAGACTCTCGCAGAGTTAAATCGGAGAATTTGAAACACAGAAAACACAAGTGA
                      ____________________________________________________________
consensus             AAGAGGAAAGACTCTCGCAGAGTTAAATCGGAGAATTTGAAACACAGAAAACACAAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048C21+           ACAGACTATAATTTTGCTCTTGGATTGATTCTCGTTCGATTTGATTGTTCCTGAGAGTTC
                      ____________________________________________________________
consensus             ACAGACTATAATTTTGCTCTTGGATTGATTCTCGTTCGATTTGATTGTTCCTGAGAGTTC