Contig 005286:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS033E04Sequence620005286 (9)emb|CDP19763.1|9e-41unnamed protein product [Coffea canephora]
JMFS059A01Sequence624005286 (9)ref|NP_001233765.1|1e-59auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au
JMFS095E09Sequence627005286 (9)ref|NP_001233765.1|6e-69auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au
JMFS100D12Sequence606005286 (9)ref|NP_001233765.1|2e-67auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au
JMFS110A03Sequence397005286 (9)emb|CDP19763.1|3e-20unnamed protein product [Coffea canephora]
JMFS155A06Sequence626005286 (9)ref|NP_001233765.1|2e-64auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au
JMSF022F17Sequence677005286 (9)ref|NP_001233765.1|9e-71auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au785011420 (3)ref|XP_009625132.1|9e-76PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
JMSF032P19Sequence677005286 (9)ref|NP_001233765.1|9e-80auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au767011420 (3)ref|XP_006346635.1|1e-65PREDICTED: auxin response factor 2-like [Solanum tuberosum]
JMSF046O23Sequence715005286 (9)ref|NP_001233765.1|6e-80auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au670011420 (3)ref|XP_006346635.1|7e-22PREDICTED: auxin response factor 2-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFS155A06+                                                                   TTTA
JMSF022F17+                                                      AGGCTGTAAGTGTTTTA
JMFS095E09+                                                               GTGTTTTA
JMSF032P19+                   AAGCACAGAAAACCCACCATGTGTGCTGGTGTCTGAGGCTGTAAGTGTTTTA
JMFS100D12+                                                      AGGCTGTAAGTGTTTTA
JMSF046O23+                TTTAAGCACAGAAAACCCACCATGTGTGCTGGTGTCTGAGGCTGTAAGTGTTTTA
                      ____________________________________________________________
consensus                  TTTAAGCACAGAAAACCCACCATGTGTGCTGGTGTCTGAGGCTGTAAGTGTTTTA
 
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JMFS059A01+                                     CTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMFS155A06+           CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMSF022F17+           CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMFS095E09+           CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMSF032P19+           CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMFS100D12+           CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMSF046O23+           CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
                      ____________________________________________________________
consensus             CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
 
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JMFS059A01+           TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMFS155A06+           TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMSF022F17+           TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMFS095E09+           TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMSF032P19+           TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMFS100D12+           TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMSF046O23+           TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
                      ____________________________________________________________
consensus             TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
 
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JMFS059A01+           GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMFS155A06+           GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMSF022F17+           GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMFS095E09+           GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMFS033E04+                                                                      C
JMSF032P19+           GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMFS100D12+           GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMSF046O23+           GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
                      ____________________________________________________________
consensus             GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
 
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JMFS059A01+           ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMFS110A03+                                              TGCTTCAACCTGCTCTATATGGCCT
JMFS155A06+           ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMSF022F17+           ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMFS095E09+           ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMFS033E04+           ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMSF032P19+           ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMFS100D12+           ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMSF046O23+           ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
                      ____________________________________________________________
consensus             ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
 
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JMFS059A01+           TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMFS110A03+           TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMFS155A06+           TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMSF022F17+           TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMFS095E09+           TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMFS033E04+           TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMSF032P19+           TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMFS100D12+           TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMSF046O23+           TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
                      ____________________________________________________________
consensus             TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
 
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JMFS059A01+           GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
JMFS110A03+           GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTC------ACCGTTTCCGGCGCCG
JMFS155A06+           GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTC------ACCGTTTCCGGCGCCG
JMSF022F17+           GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
JMFS095E09+           GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
JMFS033E04+           GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
JMSF032P19+           GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
JMFS100D12+           GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTC------ACCGTTTCCGGCGCCG
JMSF046O23+           GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
                      ____________________________________________________________
consensus             GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
 
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JMFS059A01+           GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMFS110A03+           GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMFS155A06+           GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMSF022F17+           GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMFS095E09+           GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMFS033E04+           GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMSF032P19+           GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMFS100D12+           GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMSF046O23+           GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
                      ____________________________________________________________
consensus             GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
 
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JMFS059A01+           CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMFS110A03+           CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMFS155A06+           CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMSF022F17+           CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMFS095E09+           CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMFS033E04+           CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMSF032P19+           CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMFS100D12+           CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMSF046O23+           CCTCTGATCGAAACCTCCGAACTCACCATTCCCGTACGCTCACGAAAACTACAGATCTCT
                      ____________________________________________________________
consensus             CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
 
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JMFS059A01+           CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMFS110A03+           CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMFS155A06+           CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMSF022F17+           CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMFS095E09+           CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMFS033E04+           CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMSF032P19+           CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMFS100D12+           CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMSF046O23+           CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
                      ____________________________________________________________
consensus             CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
 
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JMFS059A01+           ATTCAACAACTTTCTCGCTCTTATTTCTCCCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMFS110A03+           ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMFS155A06+           ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMSF022F17+           ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMFS095E09+           ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMFS033E04+           ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGC         
JMSF032P19+           ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMFS100D12+           ATTCAACAACTTTCTCGCTCTTATTTATCTCTCTACACAAGCTGCTGCTG          
JMSF046O23+           ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
                      ____________________________________________________________
consensus             ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
 
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JMFS059A01+           AATCTGTATGTATATCTTTCACAGGAGAGGATGGGCTCGCAGGGACAGGA          
JMFS110A03+           AATCTGTATGTATATCTT                                          
JMFS155A06+           AATCTGTATGTATATCTTTCACAGGAGA                                
JMSF022F17+           AATCTGTATGTATATCTTTCACAGGAGAGGATGGGCTCGCAGGGACAGGACAATAGAGTC
JMFS095E09+           AATCTGTATGTATATCTTT                                         
JMSF032P19+           AATCTGTATGTATATCTTTCACAG                                    
JMSF046O23+           AATCTGTATGTATATCTTTCACAGGAGAGGATGGGCTCGCAGGGACAGGACAATAGAGTC
                      ____________________________________________________________
consensus             AATCTGTATGTATATCTTTCACAGGAGAGGATGGGCTCGCAGGGACAGGACAATAGAGTC