Contig 005285:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017H04Sequence568005285 (10)ref|XP_004232479.1|5e-76PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Solanum lycopersicum] re662005285 (10)ref|XP_004232479.1|7e-62PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Solanum lycopersicum] re
JMFN025E20Sequence611005285 (10)ref|XP_004232479.1|6e-64PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Solanum lycopersicum] re
JMFN035M11Sequence600005285 (10)ref|XP_004232479.1|2e-75PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Solanum lycopersicum] re
JMFN043C14Sequence593005285 (10)ref|XP_004232479.1|6e-76PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Solanum lycopersicum] re
JMSF034C15Sequence656005285 (10)ref|XP_004232479.1|6e-67PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Solanum lycopersicum] re616005285 (10)ref|XP_004232479.1|4e-67PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Solanum lycopersicum] re
JMSF046O11Sequence717005285 (10)ref|XP_004232479.1|6e-65PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Solanum lycopersicum] re547016200ref|XP_009621869.1|5e-22PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Nicotiana tomentosiformi
JMSF051H06Sequence636005285 (10)ref|XP_004232479.1|9e-76PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Solanum lycopersicum] re581005285 (10)ref|XP_004232479.1|5e-76PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Solanum lycopersicum] re

Alignment

This contig is upended


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rJMFF017H04-                                                           ATGTTTGCNNA
                      ____________________________________________________________
consensus                                                              ATGTTTGCNNA
 
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rJMFF017H04-          TTGAATGANACCTACACGTTTAAAAGTGAAGGTTGAGGAATCCAANAACTCACACACCAN
                      ____________________________________________________________
consensus             TTGAATGANACCTACACGTTTAAAAGTGAAGGTTGAGGAATCCAANAACTCACACACCAN
 
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rJMFF017H04-          ATATCTCNATTGTTACTANAACTAGAAAATCAGTTANAACTGTATATCTAACTTTTTTAT
rJMSF051H06-                                                           AACTTTTTTAT
JMFN043C14+                                                       TATCTAACTTTTTTAT
                      ____________________________________________________________
consensus             ATATCTCNATTGTTACTANAACTAGAAAATCAGTTANAACTGTATATCTAACTTTTTTAT
 
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rJMFF017H04-          GTTCACATAACAACANAACTAAGTAAATTCCAACACAAAGATTACAGTANATACACAACA
rJMSF051H06-          GTTCACATAACAACAAAACTAAGTAAATTCCAACACAAAGATTACAGTAGATACACAACA
JMFF017H04+           GTTCACATAACAACAAAACTAAGTAAATTCCAACACAAAGATTACAGTAGATACACAACA
JMFN043C14+           GTTCACATAACAACAAAACTAAGTAAATTCCAACACAAAGATTACAGTAGATACACAACA
                      ____________________________________________________________
consensus             GTTCACATAACAACAAAACTAAGTAAATTCCAACACAAAGATTACAGTAGATACACAACA
 
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rJMFF017H04-          CTAAAAACAGAGCAAATCAAATCCACTTTAGTGCGGNCACCTCCTTACNGGTGGCACAAC
rJMSF051H06-          CTAAAAACAGAGCAAATCAAATCCACTTTAGTGCGGTCACCTCCTTACAGGTGGCACAAC
JMFF017H04+           CTAAAAACAGAGCAAATCAAATCCACTTTAGTGCGGTCACCTCCTTACAGGTGGCACAAC
JMFN035M11-                                               TCACCTCCTTACAGGTGGCACAAC
JMSF051H06+                                               TCACCTCCTTACAGGTGGCACAAC
rJMSF034C15-                                              TCACCTCCTTGCAGGTGGCACAAC
JMSF034C15+                                                CACCTCCTTGCAGGTGGCACAAC
JMFN025E20+                                                CACCTCCTTACAGGTGGCACAAC
JMFN043C14+           CTAAAAACAGAGCAAATCAAATCCACTTTAGTGCGGTCACCTCCTTACAGGTGGCACAAC
JMSF046O11+                                                CACCTCCTTACAGGTGGCACAAC
                      ____________________________________________________________
consensus             CTAAAAACAGAGCAAATCAAATCCACTTTAGTGCGGTCACCTCCTTACAGGTGGCACAAC
 
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rJMFF017H04-          ACCTCTGNCAGGTGCAGCACCACGACCAGCGGCCTGTGCTTTGGCCCGCATANCAATAGC
rJMSF051H06-          ACCTCTGCCAGGTGCAGCACCACGACCAGCGGCCTGTGCTTTGGCCCGCATAGCAATAGC
JMFF017H04+           ACCTCTGCCAGGTGCAGCACCACGACCAGCGGCCTGTGCTTTGGCCCGCATAGCAATAGC
JMFN035M11-           ACCTCTGCCAGGTGCAGCACCACGACCAGCGGCCTGTGCTTTGGCCCGCATAGCAATAGC
JMSF051H06+           ACCTCTGCCAGGTGCAGCACCACGACCAGCGGCCTGTGCTTTGGCCCGCATAGCAATAGC
rJMSF034C15-          ACCTCTGCCGGGTGCAGCTCCACGACCTGCTGCCTGCGCTTTGGCTCGCATAGCAATTGC
JMSF034C15+           ACCTCTGCCGGGTGCAGCTCCACGACCTGCTGCCTGCGCTTTGGCTCGCATAGCAATTGC
JMFN025E20+           ACCCCTGCCAGGTGCAGCTCCTCGACCTGCAGCCTGCGCTTTGGCTCGCATGGCAATGGC
JMFN043C14+           ACCTCTGCCAGGTGCAGCACCACGACCAGCGGCCTGTGCTTTGGCCCGCATAGCAATAGC
JMSF046O11+           ACCCCTGCCAGGTGCAGCTCCTCGACCTGCAGCCTGCGCTTTGGCTCGCATGGCAATGGC
                      ____________________________________________________________
consensus             ACCTCTGCCAGGTGCAGCACCACGACCAGCGGCCTGTGCTTTGGCCCGCATAGCAATAGC
 
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rJMFF017H04-          ACGTCCCCGTCCAACTCCNAGNGATGTACCTTTGCCCTTGATTTTANCTTCTANACGCTT
rJMSF051H06-          ACGTCCCCGTCCAACTCCAAGTGATGTACCTTTGCCCTTGATTTTAGCTTCTAGACGCTT
JMFF017H04+           ACGTCCCCGTCCAACTCCAAGTGATGTACCTTTGCCCTTGATTTTAGCTTCTAGACGCTT
JMFN035M11-           ACGTCCCCGTCCAACTCCAAGTGATGTACCTTTGCCCTTGATTTTAGCTTCTAGACGCTT
JMSF051H06+           ACGTCCCCGTCCAACTCCAAGTGATGTACCTTTGCCCTTGATTTTAGCTTCTAGACGCTT
rJMSF034C15-          ACGCCCCCTTCCAACTCCAAGTGATGTACCTTTACCCTTGATTTTAGCTTCTAGGCGCTT
JMSF034C15+           ACGCCCCCTTCCAACTCCAAGTGATGTACCTTTACCCTTGATTTTAGCTTCTAGGCGCTT
JMFN025E20+           ACGTCCTCGTCCAACTCCGAGTGATGTACCTTTGCCCTTGATTTTAGCGTCTAGACGCTT
JMFN043C14+           ACGTCCCCGTCCAACTCCAAGTGATGTACCTTTGCCCTTGATTTTAGCTTCTAGACGCTT
JMSF046O11+           ACGTCCTCGTCCAACTCCGAGTGATGTACCTTTGCCCTTGATTTTAGCGTCTAGACGCTT
                      ____________________________________________________________
consensus             ACGTCCCCGTCCAACTCCAAGTGATGTACCTTTGCCCTTGATTTTAGCTTCTAGACGCTT
 
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rJMFF017H04-          GAACATAGGAGCATTCTTAAGCATATCANGAATTATCATGAACCTGACTTTGCTGCCTCN
rJMSF051H06-          GAACATAGGAGCATTCTTAAGCATATCAGGAATTATCATGAACCTGACTTTGCTGCCTCG
JMFF017H04+           GAACATAGGAGCATTCTTAAGCATATCAGGAATTATCATGAACCTGACTTTGCTGCCTCG
JMFN035M11-           GAACATAGGAGCATTCTTAAGCATATCAGGAATTATCATGAACCTGACTTTGCTGCCTCG
JMSF051H06+           GAACATAGGAGCATTCTTAAGCATATCAGGAATTATCATGAACCTGACTTTGCTGCCTCG
rJMSF034C15-          AAACATAGGAGCATTCTTAAGCATATCAGGAATAATCATGAACCTGACTTTGCTGCCTCG
JMSF034C15+           AAACATAGGAGCATTCTTAAGCATATCAGGAATAATCATGAACCTGACTTTGCTGCCTCG
JMFN025E20+           GAACATAGGAGCATTCTTAAGCATATCAGGAATTATCATGAATCTGACTTTGCTTCCTCG
JMFN043C14+           GAACATAGGAGCATTCTTAAGCATATCAGGAATTATCATGAACCTGACTTTGCTGCCTCG
JMSF046O11+           GAACATAGGAGCATTCTTAAGCATATCAGGAATTATCATGAATCTGACTTTGCTTCCTCG
                      ____________________________________________________________
consensus             GAACATAGGAGCATTCTTAAGCATATCAGGAATTATCATGAACCTGACTTTGCTGCCTCG
 
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rJMFF017H04-          AATAAAANCATGCTCAAGNTGNGAAACTCTTCCATCTTTAGCTGNGTAAGNGATGCTCTC
rJMSF051H06-          AATAAAAACATGCTCAAGTTGTGAAACTCTTCCATCTTTAGCTGTGTAAGTGATGCTCTC
JMFF017H04+           AATAAAAACATGCTCAAGTTGTGAAACTCTTCCATCTTTAGCTGTGTAAGTGATGCTCTC
JMFN035M11-           AATAAAAACATGCTCAAGTTGTGAAACTCTTCCATCTTTAGCTGTGTAAGTGATGCTCTC
JMSF051H06+           AATAAAAACATGCTCAAGTTGTGAAACTCTTCCATCTTTAGCTGTGTAAGTGATGCTCTC
rJMSF034C15-          TATAAAAACATGCTCCAGTTGTGAGACCCTTCCATCCTTAGCAGTGTAAGTGATGCTCTC
JMSF034C15+           TATAAAAACATGCTCCAGTTGTGAGACCCTTCCATCCTTAGCAGTGTAAGTGATGCTCTC
JMFN025E20+           AATAAAAACATGTTCAAGTTGTGAAACGCTTCCATCTTTGGCAGTGTAAGTGATGCTCTC
JMFN043C14+           AATAAAAACATGCTCAAGTTGTGAAACTCTTCCATCTTTAGCTGTGTAAGTGATGCTCTC
JMSF046O11+           AATAAAAACATGTTCAAGTTGTGAAACGCTTCCATCTTTGGCAGTGTAAGTGATGCTCTC
                      ____________________________________________________________
consensus             AATAAAAACATGCTCAAGTTGTGAAACTCTTCCATCTTTAGCTGTGTAAGTGATGCTCTC
 
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rJMFF017H04-          GAGCTGGNAATTCCAGTTGTCCTCGCACTCCANCATGCTTCNTCTGTANAGCTCGCCGCT
rJMSF051H06-          GAGCTGGCAATTCCAGTTGTCCTCGCACTCCACCATGCTTCCTCTGTAGAGCTCGCCGCT
JMFF017H04+           GAGCTGGCAATTCCAGTTGTCCTCGCACTCCACCATGCTTCCTCTGTAGAGCTCGCCGCT
JMFN035M11-           GAGCTGGCAATTCCAGTTGTCCTCGCACTCCACCATGCTTCCTCTGTAGAGCTCGCCGCT
JMSF051H06+           GAGCTGGCAATTCCAGTTGTCCTCGCACTCCACCATGCTTCCTCTGTAGAGCTCGCCGCT
rJMSF034C15-          AAGCTGGCAATTCCAGTTGTCCTCGCACTCCACCATGCTTCCCCTGTAGAGCTCGCCGCT
JMSF034C15+           AAGCTGGCAATTCCAGTTGTCCTCGCACTCCACCATGCTTCCCCTGTAGAGCTCGCCGCT
JMFN025E20+           CAGTTGGCAGTTCCAGTTGTCCTCGCACTCCACCATGCTTCCTCTGTAGAGCTCGCCGCT
JMFN043C14+           GAGCTGGCAATTCCAGTTGTCCTCGCACTCCACCATGCTTCCTCTGTAGAGCTCGCCGCT
JMSF046O11+           CAGTTGGCAGTTCCAGTTGTCCTCGCACTCCACCATGCTTCCTCTGTAGAGCTCGCCGCT
                      ____________________________________________________________
consensus             GAGCTGGCAATTCCAGTTGTCCTCGCACTCCACCATGCTTCCTCTGTAGAGCTCGCCGCT
 
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rJMFF017H04-          CTTCATCTCCACCGTCANAATGTGCCCCGTCGCCTCNTGGAGAAGCTTCACCGGGATCCC
rJMSF051H06-          CTTCATCTCCACCGTCACAATGTGCCCCGTCGCCTCGTGGAGAAGCTTCACCGGGATCCC
JMFF017H04+           CTTCATCTCCACCGTCACAATGTGCCCCGTCGCCTCGTGGAGAAGCTTCACCGGGATCCC
JMFN035M11-           CTTCATCTCCACCGTCACAATGTGCCCCGTCGCCTCGTGGAGAAGCTTCACCGGGATCCC
JMSF051H06+           CTTCATCTCCACCGTCACAATGTGCCCCGTCGCCTCGTGGAGAAGCTTCACCGGGATCCC
rJMSF034C15-          CTTCATTTCCACAGTCACGATGTGCCCCGTCGCCTCGTGGAGAAGCTTCACCGGGATCCC
JMSF034C15+           CTTCATTTCCACAGTCACGATGTGCCCCGTCGCCTCGTGGAGAAGCTTCACCGGGATCCC
JMFN025E20+           CTTCATCTCCACGGTGACGACGTGCCCCGTCGACTCGTGTAGAAGCTTCACCGGGATTCC
JMFN043C14+           CTTCATCTCCACCGTCACAATGTGCCCCGTCGCCTCGTGGAGAAGCTTCACCGGGATCCC
JMSF046O11+           CTTCATCTCCACGGTGACGACGTGCCCCGTCGACTCGTGTAGAAGCTTCACCGGGATTCC
                      ____________________________________________________________
consensus             CTTCATCTCCACCGTCACAATGTGCCCCGTCGCCTCGTGGAGAAGCTTCACCGGGATCCC
 
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rJMFF017H04-          CAAGCTCCTACTCATCGTNAC-TGCTCTTTCGNCGGGACTTTTACTCCGAGA        
rJMSF051H06-          CAAGCTCCTACTCATCGTC                                         
JMFF017H04+           CAAGCTCCTACTCATCGTC                                         
JMFN035M11-           CAAGCTCCTACTCATCGTCAC-TGCTCTTTCGCCGGG                       
JMSF051H06+           CAAGCTCCTACTCATCGTC                                         
rJMSF034C15-          CAAGCTCCGACTCATCGT                                          
JMSF034C15+           CAAGCTCCGACTCATCGT                                          
JMFN025E20+           CAAGCT                                                      
JMFN043C14+           CAAGCTCCTACTCATCGTCAC-TGCTCTTTCGCCGGGACTTTTACTCCGAGAGAAAAACC
JMSF046O11+           CAAGCTACGACTCATCGTCGCAAGAAACTCCGGCGTGGGTCAGATTTGGATATATAAACA
                      ____________________________________________________________
consensus             CAAGCTCCTACTCATCGTCAC-TGCTCTTTCGCCGGGACTTTTACTCCGAGATATAAACC
 
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JMFN043C14+           TAGTGCTGTAAGCCT                                             
JMSF046O11+           ATATGCTCCGCTTGTGTTAGTCCCACAACGTCTCACGAACAGTGACCCGTGTACTCCGTC
                      ____________________________________________________________
consensus             TTGTGCTGTGCTTGTGTTAGTCCCACAACGTCTCACGAACAGTGACCCGTGTACTCCGTC