Contig 005283:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF046K02-                                                               TAAGATT
                      ____________________________________________________________
consensus                                                                  TAAGATT
 
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rJMSF046K02-          TGATTTACATGGTTACAATGAGATTTGCCTCACACCTTGAATTCATCACATAAATTTCGC
                      ____________________________________________________________
consensus             TGATTTACATGGTTACAATGAGATTTGCCTCACACCTTGAATTCATCACATAAATTTCGC
 
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rJMSF046K02-          AAGTAGAGAGATAATTGAACTTTTACTCTCTAAAACTATACTTATCATCATCTAAAAGTA
                      ____________________________________________________________
consensus             AAGTAGAGAGATAATTGAACTTTTACTCTCTAAAACTATACTTATCATCATCTAAAAGTA
 
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rJMSF046K02-          GAGAGAATTTTTAACAATACAATTCACTTTCTTCATGAGAAACCCAACAAATCCATTTGC
                      ____________________________________________________________
consensus             GAGAGAATTTTTAACAATACAATTCACTTTCTTCATGAGAAACCCAACAAATCCATTTGC
 
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rJMSF046K02-          TTCACTACTTAGTCCATAGTTCTATATTTTTTATGTTTTGGGTCTACAAAATCAATCACT
rJMSF028F05-                          TAGTTCTATATTTTTTATGTTTTGGGTCTACAAAATCAATCACT
                      ____________________________________________________________
consensus             TTCACTACTTAGTCCATAGTTCTATATTTTTTATGTTTTGGGTCTACAAAATCAATCACT
 
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rJMSF046K02-          TATTCTACTCAACCACTCTCACAAAACCTCATTTTACTAATTCGGTGATTGAGAAACCGT
rJMSF028F05-          TATTCTACTCAACCACTCTCACAAAACCTCATTTTACTAATTCGGTGATTGAGAAACCGT
                      ____________________________________________________________
consensus             TATTCTACTCAACCACTCTCACAAAACCTCATTTTACTAATTCGGTGATTGAGAAACCGT
 
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rJMSF046K02-          TATAAGTTGCATCTTGCTGTCAGTAAACATGAAGGCGTAAAAGAATATCAAGAGGTTTTC
rJMSF028F05-          TATAAGTTGCATCTTGCTGTCAGTAAACATGAAGGCGTAAAAGAATATCAAGAGGTTTTC
                      ____________________________________________________________
consensus             TATAAGTTGCATCTTGCTGTCAGTAAACATGAAGGCGTAAAAGAATATCAAGAGGTTTTC
 
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rJMSF046K02-          TCAAGTCGATGCAAATTATAGTGTTGTTTTCTAAATGCCAAAATAGATGGGGGTGGAGAA
rJMSF028F05-          TCAAGTCGATGCAAATTATAGTGTTGTTTTCTAAATGCCAAAATAGATGGGGGTGGAGAA
JMSF028F05+                TCGATGCAAATTATAGTGTTGTTTTCTAAATGCCAAAATAGATGGGGGTGGAGAA
JMSF046K02+                TCGATGCAAATTATAGTGTTGTTTTCTAAATGCCAAAATAGATGGGGGTGGAGAA
                      ____________________________________________________________
consensus             TCAAGTCGATGCAAATTATAGTGTTGTTTTCTAAATGCCAAAATAGATGGGGGTGGAGAA
 
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rJMSF046K02-          AAACGCAGTTGTACTTATTTTCTTCTTCTTATCATCCATGGAGAGATGTTGAACCAAACT
rJMSF028F05-          AAACGCAGTTGTACTTATTTTCTTCTTCTTATCATCCATGGAGAGATGTTGAACCAAACT
JMSF028F05+           AAACGCAGTTGTACTTATTTTCTTCTTCTTATCATCCATGGAGAGATGTTGAACCAAACT
JMSF046K02+           AAACGCAGTTGTACTTATTTTCTTCTTCTTATCATCCATGGAGAGATGTTGAACCAAACT
                      ____________________________________________________________
consensus             AAACGCAGTTGTACTTATTTTCTTCTTCTTATCATCCATGGAGAGATGTTGAACCAAACT
 
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rJMSF046K02-          CTTACATAGGATGGCGACCACTACCAAGAAGCTGTCCAACTAGATTAGTCACCTGCCAGT
rJMSF028F05-          CTTACATAGGATGGCGACCACTACCAAGAAGCTGTCCAACTAGATTAGTCACCTGCCAGT
JMSF028F05+           CTTACATAGGATGGCGACCACTACCAAGAAGCTGTCCAACTAGATTAGTCACCTGCCAGT
JMSF046K02+           CTTACATAGGATGGCGACCACTACCAAGAAGCTGTCCAACTAGATTAGTCACCTGCCAGT
                      ____________________________________________________________
consensus             CTTACATAGGATGGCGACCACTACCAAGAAGCTGTCCAACTAGATTAGTCACCTGCCAGT
 
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rJMSF046K02-          ATTTAGAAACACAGCGGTCAATGCAACTATTTTCACCCATGTTCAACTCAGATTCCTTAT
rJMSF028F05-          ATTTAGAAACACAGCGGTCAATGCAACTATTTTCACCCATGTTCAACTCAGATTCCTTAT
JMSF028F05+           ATTTAGAAACACAGCGGTCAATGCAACTATTTTCACCCATGTTCAACTCAGATTCCTTAT
JMSF046K02+           ATTTAGAAACACAGCGGTCAATGCAACTATTTTCACCCATGTTCAACTCAGATTCCTTAT
                      ____________________________________________________________
consensus             ATTTAGAAACACAGCGGTCAATGCAACTATTTTCACCCATGTTCAACTCAGATTCCTTAT
 
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rJMSF046K02-          ACTTGTTCTCAATGCACTTTTTGAAACATGTATGGGTAAGCTTGTTAAACAATTCCACCC
rJMSF028F05-          ACTTGTTCTCAATGCACTTTTTGAAACATGTATGGGTAAGCTTGTTAAACAATTCCACCC
JMSF028F05+           ACTTGTTCTCAATGCACTTTTTGAAACATGTATGGGTAAGCTTGTTAAACAATTCCACCC
JMSF046K02+           ACTTGTTCTCAATGCACTTTTTGAAACATGTATGGGTAAGCTTGTTAAACAATTCCACCC
                      ____________________________________________________________
consensus             ACTTGTTCTCAATGCACTTTTTGAAACATGTATGGGTAAGCTTGTTAAACAATTCCACCC
 
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rJMSF046K02-          TGTACTCCATCTCTTTCTCTGCCATCCCAAATATCTGATCTTTTTCCATGGCAGAAGGGG
rJMSF028F05-          TGTACTCCATCTCTTTCTCTGCCATCCCAAATATCTGATCTTTTTCCATGGCAGAAGGGG
JMSF028F05+           TGTACTCCATCTCTTTCTCTGCCATCCCAAATATCTGATCTTTTTCCATGGCAGAAGGGG
JMSF046K02+           TGTACTCCATCTCTTTCTCTGCCATCCCAAATATCTGATCTTTTTCCATGGCAGAAGGGG
                      ____________________________________________________________
consensus             TGTACTCCATCTCTTTCTCTGCCATCCCAAATATCTGATCTTTTTCCATGGCAGAAGGGG
 
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rJMSF046K02-          AATTAGTAGGTGCCATTATGTGTGGAGGTCTGGAGGAACAAAGAATGGTTCACCA     
rJMSF028F05-          AATTAGTAGGTGCCATTATGTGTGGAGGTCTGGAGGAACAAAGAATGGTTCACCAAAGTG
JMSF028F05+           AATTAGTAGGTGCCATTATGTGTGGAGGTCTGGAGGAACAAAGAATGGTTCACCAAAGTG
JMSF046K02+           AATTAGTAGGTGCCATTATGTGTGGAGGTCTGGAGGAACAAAGAATGGTTCACCAAAGTG
                      ____________________________________________________________
consensus             AATTAGTAGGTGCCATTATGTGTGGAGGTCTGGAGGAACAAAGAATGGTTCACCAAAGTG
 
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rJMSF028F05-          GCAAAAATGGAGTGTATACTTGTATCTTGGGAAGAGTGAATTGAGGTGGAAGAGTAAAAC
JMSF028F05+           GCAAAAATGGAGTGTATACTTGTATCTTGGGAAGAGTGAATTGAGGTGGAAGAGTAAAAC
JMSF046K02+           GCAAAAATGGAGTGTATACTTGTATCTTGGGAAGAGTGAATTGAGGTGGAAGAGTAAAAC
                      ____________________________________________________________
consensus             GCAAAAATGGAGTGTATACTTGTATCTTGGGAAGAGTGAATTGAGGTGGAAGAGTAAAAC
 
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rJMSF028F05-          CCTGTTTTAGATTTTATGAACTGTTTAGTACCAAGTTCCTTGATATTTTACTTCAGTAGT
JMSF028F05+           CCTGTTTTAGATTTTATGAACTGTTTAGTACCAAGTTCCTTGATATTTTACTTCAGTAGT
JMSF046K02+           CCTGTTTTAGATTTTATGAACTGTTTAGTACCAAGTTCCTTGATATTTTACTTCAGTAGT
                      ____________________________________________________________
consensus             CCTGTTTTAGATTTTATGAACTGTTTAGTACCAAGTTCCTTGATATTTTACTTCAGTAGT
 
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rJMSF028F05-          TATCGAAATTCCTGCGTTATTTCCTCCTGGCATCTAGAGCTC                  
JMSF028F05+           TATCGAAATTCCTGCGTTATTTCCTCCTGGCATCTAGAGCTCCAGATACAAAGTCTTCTA
JMSF046K02+           TATCGAAATTCCTGCGTTATTTCCTCCTGGCATCTAGAGCTCCAGATACAAAGTCTTCTA
                      ____________________________________________________________
consensus             TATCGAAATTCCTGCGTTATTTCCTCCTGGCATCTAGAGCTCCAGATACAAAGTCTTCTA
 
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JMSF028F05+           CCGAGAGACGATGAGACCGGCGAGGGATGAGAAGCGGAGACGCCGAGGGAAGAAAAGCGG
JMSF046K02+           CCGAGAGACGATGAGACCGGCGAGGGATGAGAAGCGGAGACGCCGAGGGAAGAAAAGCGG
                      ____________________________________________________________
consensus             CCGAGAGACGATGAGACCGGCGAGGGATGAGAAGCGGAGACGCCGAGGGAAGAAAAGCGG
 
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JMSF028F05+           GGACGCCGAGGGAGGAGAAAAGGAGAAAGCGAGGGCAGAGAAGCGGTGATGC        
JMSF046K02+           GGATGCCGAGGGAGGAGAAAAGGAGAAAGCGAGGGCAGAGAAGCGGTGATGCTGAGTCCC
                      ____________________________________________________________
consensus             GGATGCCGAGGGAGGAGAAAAGGAGAAAGCGAGGGCAGAGAAGCGGTGATGCTGAGTCCC