| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF022E11 | Sequence | 532 | 005281 (10) | ref|XP_007035513.1| | 7e-17 | RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao] gb|EOY0643 | 755 | 005281 (10) | |||
| JMFF042N13 | Sequence | 645 | 005281 (10) | ref|XP_004241072.1| | 5e-18 | PREDICTED: E3 ubiquitin-protein ligase Topors [Solanum lycopersicum] | 598 | 005281 (10) | |||
| JMSF006A20 | Sequence | 316 | 005281 (10) | 317 | 020287 | ref|XP_009611351.1| | 2e-28 | PREDICTED: cinnamoyl-CoA reductase 1-like [Nicotiana tomentosiformis] | |||
| JMSF026K21 | Sequence | 649 | 016788 | ref|XP_009802830.1| | 7e-21 | PREDICTED: E3 ubiquitin-protein ligase Topors isoform X3 [Nicotiana sylvestris] | 683 | 005281 (10) | ref|XP_009802829.1| | 5e-61 | PREDICTED: E3 ubiquitin-protein ligase Topors isoform X2 [Nicotiana sylvestris] |
| JMSF035M04 | Sequence | 679 | 005281 (10) | ref|XP_009802830.1| | 1e-28 | PREDICTED: E3 ubiquitin-protein ligase Topors isoform X3 [Nicotiana sylvestris] | 718 | 005281 (10) | |||
| JMSF046F21 | Sequence | 749 | 005281 (10) | ref|XP_006356698.1| | 1e-34 | PREDICTED: E3 ubiquitin-protein ligase Topors-like [Solanum tuberosum] | 777 | 005281 (10) | ref|XP_009802828.1| | 8e-25 | PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF042N13- ACCCTGGAGAGTTTTTTTTT
____________________________________________________________
consensus ACCCTGGAGAGTTTTTTTTT
. : . : . : . : . : . :
rJMFF042N13- TTTTTTTAGATCATCTAAAGTCGTGGGACCGAAAGTGAAATTAATTCGTCTAAAAAACAA
rJMFF022E11- AGTCGTGGGACCGAAAGTGAAATTAATTCGTCTAAAAAACAA
rJMSF035M04- A
____________________________________________________________
consensus TTTTTTTAGATCATCTAAAGTCGTGGGACCGAAAGTGAAATTAATTCGTCTAAAAAACAA
. : . : . : . : . : . :
rJMFF042N13- ATCTGGAGTTCACAAGCTGTGAAAGCCGCACTTATGTCAAACATAGTAATGTTTTGATAC
rJMFF022E11- ATCTGGAGTTCACAAGCTGTGAAAGCCGCACTTATGTCAAACATAGTAATGTTTTGATAC
rJMSF035M04- ATCTGGAGTTCACAAGCTGTGAAAGCCGCACTTATGTCAAACATAGTAATGTTTTGATAC
____________________________________________________________
consensus ATCTGGAGTTCACAAGCTGTGAAAGCCGCACTTATGTCAAACATAGTAATGTTTTGATAC
. : . : . : . : . : . :
rJMFF042N13- ATCAGAAAACTAAGCTGGAGTTGTGTTCTTATAAATGTTTTGCCATTTCTATAATTTCAA
rJMFF022E11- ATCAGAAAACTAAGCTGGAGTTGTGTTCTTATAAATGTTTTGCCATTTCTATAATTTCAA
rJMSF035M04- ATCAGAAAACTAAGCTGGAGTTGTGTTCTTATAAATGTTTTGCCATTTCTATAATTTCAA
rJMSF046F21- A
____________________________________________________________
consensus ATCAGAAAACTAAGCTGGAGTTGTGTTCTTATAAATGTTTTGCCATTTCTATAATTTCAA
. : . : . : . : . : . :
rJMFF042N13- TAAGCACTTTTGACTCTCTCCAAGGGTTCATGTAAGAACAAGAATGAAGTTCTTTTATGA
rJMFF022E11- TAAGCACTTTTGACTCTCTCCAAGGGTTCATGTAAGAACAAGAATGAAGTTCTTTTATGA
rJMSF035M04- TAAGCACTTTTGACTCTCTCCAAGGGTTCATGTAAGAACAAGAATGAAGTTCTTTTATGA
rJMSF046F21- TAAGCACTTTTGACTCTCTCCAAGGGTTCATGTAAGAACAAGAATGAAGTTCTTTTATGA
____________________________________________________________
consensus TAAGCACTTTTGACTCTCTCCAAGGGTTCATGTAAGAACAAGAATGAAGTTCTTTTATGA
. : . : . : . : . : . :
rJMFF042N13- CCTCTTCACCAAGATTTGCAAAATAATCATCACAATTCACATTACTTACCCTCACTCGGG
rJMFF022E11- CCTCTTCACCAAGATTTGCAAAATAATCATCACAATTCACATTACTTACCCTCACTCGGG
rJMSF035M04- CCTCTTCACCAAGATTTGCAAAATAATCATCACAATTCACATTACTTACCCTCACTCGGG
rJMSF046F21- CCTCTTCACCAAGATTTGCAAAATAATCATCACAATTCACATTACTTACCCTCACTCGGG
____________________________________________________________
consensus CCTCTTCACCAAGATTTGCAAAATAATCATCACAATTCACATTACTTACCCTCACTCGGG
. : . : . : . : . : . :
rJMFF042N13- GTGTATACTGTTGATGCTTCTGAACAATCCCTCGCAGTCTAGGAGGTGAGGCGCGTCTTC
rJMFF022E11- GTGTATACTGTTGATGCTTCTGAACAATCCCTCGCAGTCTAGGAGGTGAGGCGCGTCTTC
rJMSF035M04- GTGTATACTGTTGATGCTTCTGAACAATCCCTCGCAGTCTAGGAGGTGAGGCGCGTCTTC
rJMSF046F21- GTGTATACTGTTGATGCTTCTGAACAATCCCTCGCAGTCTAGGAGGTGAGGCGCGTCTTC
____________________________________________________________
consensus GTGTATACTGTTGATGCTTCTGAACAATCCCTCGCAGTCTAGGAGGTGAGGCGCGTCTTC
. : . : . : . : . : . :
rJMFF042N13- CTTAAGTTATCACCCTCCCAACTTGTTTTGAGACACGAGAATTCATCTGTCATGATTTTA
rJMFF022E11- CTTAAGTTATCACCCTCCCAACTTGTTTTGAGACACGAGAATTCATCTGTCATGATTTTA
rJMSF035M04- CTTAAGTTATCACCCTCCCAACTTGTTTTGAGACACGAGAATTCATCTGTCATGATTTTA
rJMSF046F21- CTTAAGTTATCACCCTCCCAACTTGTTTTGAGACACGAGAATTCATCTGTCATAATTTTA
____________________________________________________________
consensus CTTAAGTTATCACCCTCCCAACTTGTTTTGAGACACGAGAATTCATCTGTCATGATTTTA
. : . : . : . : . : . :
rJMFF042N13- CTAAAAGTAGCACTTCACTTGCATGCATAGTTAATCAAAATCCGTCCAATCTTCCATATA
rJMFF022E11- CTAAAAGTAGCACTTCACTTGCATGCATAGTTAATCAAAATCCGTCCAATCTTCCATATA
rJMSF035M04- CTAAAAGTAGCACTTCACTTGCATGCATAGTTAATCAAAATCCGTCCAATCTTCCATATA
rJMSF046F21- CTAAAAGTAGCACTTCACTTGCATGCATAGTTAATCAAAATCCGTCCAATCTTCCATATA
____________________________________________________________
consensus CTAAAAGTAGCACTTCACTTGCATGCATAGTTAATCAAAATCCGTCCAATCTTCCATATA
. : . : . : . : . : . :
rJMFF042N13- AGACTACATCATTATTTGCATTGAAGTTGGCCCGCATAAAATGCTTTTCTTGCACAGAAA
rJMFF022E11- AGACTACATCATTATTTGCATTGAAGTTGGCCCGCATAAAATGCTTTTCTTGCACAGAAA
rJMSF035M04- AGACTACATCATTATTTGCATTGAAGTTGGCCCGCATAAAATGCTTTTCTTGCACAGAAA
rJMSF046F21- AGACTACATCATTATTTGCATTGAAGTTGGCCCGCATAAAATGCTTTTCTTGCACAGAAA
____________________________________________________________
consensus AGACTACATCATTATTTGCATTGAAGTTGGCCCGCATAAAATGCTTTTCTTGCACAGAAA
. : . : . : . : . : . :
rJMFF042N13- TGAGGATCCCTGTATCTCAGAGAAATTTTCATAAACGC
rJMFF022E11- TGAGGATCCCTGTATCTCAGAGAAATTTTCATAAACGCACGAAGTAGCAGACGAATCA-G
rJMSF035M04- TGAGGATCCCTGTATCTCAGAGAAATTTTCATAAACGCACGAAGTAGCAGACGAATCA-G
rJMSF046F21- TGAGGATCCCTGTATCTCAGAGAAATTTTCATAAACGCACGAAGTAGCAGACGAATCA-G
rJMSF026K21- TTTTCATAAACGCACTGAGCAGCAGACGAATCAGG
____________________________________________________________
consensus TGAGGATCCCTGTATCTCAGAGAAATTTTCATAAACGCACGAAGTAGCAGACGAATCA-G
. : . : . : . : . : . :
rJMFF022E11- GCAGACAGAAAAACATTTTTGTTCCAAGCTAACCCCTTGCATATTCATGTTGTGGGATCT
rJMSF035M04- GCAGACAGAAAAACATTTTTGTTCCAAGCTAACCCCTTGCATATTCATGTTGTGGGATCT
rJMSF046F21- GCAGACAGAAAAACATTTTTGTTCCAAGCTAACCCCTTGCATATTCATGTTGTGGGATCT
rJMSF026K21- GCAGACAGAAAAACATTTTTGTTCCAAGCTCACCCCTTGCATATTCATGTTGTGGGATCT
____________________________________________________________
consensus GCAGACAGAAAAACATTTTTGTTCCAAGCTAACCCCTTGCATATTCATGTTGTGGGATCT
. : . : . : . : . : . :
rJMFF022E11- GAGGAAAGACCGAGAAATCAGTGCATTCTTTTGGCTATTACACCATTAGACTATTATTAT
rJMSF035M04- GAGGAAAGACCGAGAAATCAGTGCATTCTTTTGGCTATTACACCATTAGACTATTATTAT
rJMSF046F21- GAGGAAAGACCGAGAAATCAGTGCATTCTTTTGGCTATTACACCATTAGACTATTATTAT
rJMSF026K21- GAGGAAAGATCAAGAAATCAGTGCATTCTTTTGGCTATTACACCATTAGACTATTATCAT
____________________________________________________________
consensus GAGGAAAGACCGAGAAATCAGTGCATTCTTTTGGCTATTACACCATTAGACTATTATTAT
. : . : . : . : . : . :
rJMFF022E11- TCCATCTAAGTTCGGTTCAATAATCTATATTCCGCCACAGTATCATATGTCTCG
rJMSF035M04- TCCATCTAAGTTCGGTTCAATAATCTATATTCCGCCACAGTATCATATGTCTCG
rJMSF046F21- TCCATCTAAGTTCGGTTCAATAATCTATATTCCGCCACAGTATCATATGTCTCGAGGGCA
rJMSF026K21- TCCATCTAAGTTCGGTTCAATGATCTATACTCCGCCACAGTATCATATGTCTCGAGGGCG
____________________________________________________________
consensus TCCATCTAAGTTCGGTTCAATAATCTATATTCCGCCACAGTATCATATGTCTCGAGGGCG
. : . : . : . : . : . :
rJMSF046F21- AGAGGGCTCTCGGCAAAACATCTAAGCTCATGCCAAAACATTTCTGTTTTTTCATGCAAG
rJMSF026K21- AGAGGGCTCTCGGCAAAACATCTAAGCTCATGCCAAAACATTTCTGTTTTTTCATGCAAG
____________________________________________________________
consensus AGAGGGCTCTCGGCAAAACATCTAAGCTCATGCCAAAACATTTCTGTTTTTTCATGCAAG
. : . : . : . : . : . :
rJMSF046F21- AAAGGCCGCAGAGGAGCAAGAAAGTTAGAACTAGCTTGGTCCCTTCTTTCATTTCCCGAG
rJMSF026K21- AAAGGCCGCAGAGGAGCAAGAAAGTCAGAAGTAGCGTGGTCCCTTCTTTCATTTCCCGAG
____________________________________________________________
consensus AAAGGCCGCAGAGGAGCAAGAAAGTTAGAAGTAGCTTGGTCCCTTCTTTCATTTCCCGAG
. : . : . : . : . : . :
rJMSF046F21- ACAAAAAGTGAGGTGACAACATGGACAATAACGGATGGATTGGGGTCATCAA
rJMSF026K21- ACAAAAAGTGAGGTGACAACATGGAAAATAACAGATGGATTGGGGTCATCAAGAATAGCC
____________________________________________________________
consensus ACAAAAAGTGAGGTGACAACATGGACAATAACGGATGGATTGGGGTCATCAAGAATAGCC
. : . : . : . : . : . :
rJMSF026K21- TCCAACTCCCTTTTTATCCAAGGTTCTATTCTTTGCATTACCATAGCTTTGGCACTATTG
JMSF046F21+ TTTGCATTACCATAGCTTTGGCACTATTG
____________________________________________________________
consensus TCCAACTCCCTTTTTATCCAAGGTTCTATTCTTTGCATTACCATAGCTTTGGCACTATTG
. : . : . : . : . : . :
rJMSF026K21- TTGTGTTCCATTTGCTCTATAAGACGATTTTTGGATGAGAAAGGAACAGCCTGCAATTTC
JMSF035M04+ AAAGGAACAGCCTGCAATTTC
JMSF046F21+ TTGTGTTCCATTTGCTCTATAAGACGATTTTTGGATGAGAAAGGAACAGCCTGCAATTTC
____________________________________________________________
consensus TTGTGTTCCATTTGCTCTATAAGACGATTTTTGGATGAGAAAGGAACAGCCTGCAATTTC
. : . : . : . : . : . :
rJMSF026K21- CTTTCATATATGCTGGCCCGCCATTGCAGTGTTCTCTCCCTAATGACACCGGGGTTTGCA
JMSF035M04+ CTTTCATATATGCTGGCCCGCCATTGCAGTGTTCTCTCCCTAATGACACCGGCGTTTGCA
JMSF046F21+ CTTTCATATATGCTGGCCCGCCATTGCAGTGTTCTCTCCCTAATGACACCGGCGTTTGCA
____________________________________________________________
consensus CTTTCATATATGCTGGCCCGCCATTGCAGTGTTCTCTCCCTAATGACACCGGCGTTTGCA
. : . : . : . : . : . :
rJMSF026K21- GCTTCCAATTGGCCAAATGACCTCCTCCTCGGGATTACCCCCGTTCTCGAGTATTGGGTA
JMSF035M04+ GCTTCCAATTGGCCAAATGACCTCCTCCTCGGGATTACCCCCGTTCTCGAGTATTGGGTA
JMFF042N13+ CAATTGGCCAAATGACCTCCTCCTCGGGATTACCCCCGTTCTCGAGTATTGGGTA
JMSF046F21+ GCTTCCAATTGGCCAAATGACCTCCTCCTCGGGATTACCCCCGTTCTCGAGTATTGGGTA
____________________________________________________________
consensus GCTTCCAATTGGCCAAATGACCTCCTCCTCGGGATTACCCCCGTTCTCGAGTATTGGGTA
. : . : . : . : . : . :
rJMSF026K21- GTTAGTTCTGCCCTT
JMSF035M04+ CTTAGTTCTGCCCTTCTTCTTCTAATTAACCTCAGTTCTTCCAAATGGCTTCTTCGCCTT
JMFF022E11+ TT
JMFF042N13+ CTTAGTTCTGCCCTTCTTCTTCTAATTAACCTCAGTTCTTCCAAATGGCTTCTTCGCCTT
JMSF046F21+ CTTAGTTCTGCCCTTCTTCTTCTAATTAACCTCAGTTCTTCCAAATGGCTTCTTCGCCTT
____________________________________________________________
consensus CTTAGTTCTGCCCTTCTTCTTCTAATTAACCTCAGTTCTTCCAAATGGCTTCTTCGCCTT
. : . : . : . : . : . :
JMSF035M04+ GCTGGAAAACCTACTGGGCGAGGTCTATCAACCAGTGGGCTTTTAAATTTCTCCTTCTCA
JMFF022E11+ GCTGGAAAACCTACTGGGCGAGGTCTATCAACCAGTGGGCTTTTAAATTTCTCCTTCTCA
JMFF042N13+ GCTGGAAAACCTACTGGGCGAGGTCTATCAACCAGTGGGCTTTTAAATTTCTCCTTCTCA
JMSF046F21+ GCTGGAAAACCTACTGGGCGAGGTCTATCAACCAGTGGGCTTTTAAATTTCTCCTTCTCA
____________________________________________________________
consensus GCTGGAAAACCTACTGGGCGAGGTCTATCAACCAGTGGGCTTTTAAATTTCTCCTTCTCA
. : . : . : . : . : . :
JMSF035M04+ AGGGTTCGAGTAGAGAGATCAAATAGGAAAAGCCAAGAGCCAAATCCCGCTTTGCAAAGT
JMFF022E11+ AGGGTTCGAGTAGAGAGATCAAATAGGAAAAGCCAAGAGCCAAATCCCGCTTTGCAAAGT
JMFF042N13+ AGGGTTCGAGTAGAGAGATCAAATAGGAAAAGCCAAGAGCCAAATCCCGCTTTGCAAAGT
JMSF046F21+ AGGGTTCGAGTAGAGAGATCAAATAGGAAAAGCCAAGAGCCAAATCCCGCTTTGCAAAGT
____________________________________________________________
consensus AGGGTTCGAGTAGAGAGATCAAATAGGAAAAGCCAAGAGCCAAATCCCGCTTTGCAAAGT
. : . : . : . : . : . :
JMSF035M04+ GGACAAGTACGCTTGTAATCACTCCACTTGTGGATGCAGTCAGCACAGAAGGCATGCTTG
JMFF022E11+ GGACAAGTACGCTTGTAATCACTCCACTTGTGGATGCAGTCAGCACAGAAGGCATGCTTG
JMFF042N13+ GGACAAGTACGCTTGTAATCACTCCACTTGTGGATGCAGTCAGCACAGAAGGCATGCTTG
JMSF046F21+ GGACAAGTACGCTTGTAATCACTCCACTTGTGGATGCAGTCAGCACAGAAGGCATGCTTG
____________________________________________________________
consensus GGACAAGTACGCTTGTAATCACTCCACTTGTGGATGCAGTCAGCACAGAAGGCATGCTTG
. : . : . : . : . : . :
JMSF035M04+ CACAATGGAAGCAATGCAGCTTGGCTTGGCTTGATTTTACAAAGACATATTGGACAAGAA
JMFF022E11+ CACAATGGAAGCAATGCAGCTTGGCTTGGCTTGATTTTACAAAGACATATTGGACAAGAA
JMFF042N13+ CACAATGGAAGCAATGCAGCTTGGCTTGGCTTGATTTTACAAAGACATATTGGACAAGAA
JMSF006A20+ TTTACAAAGACATATTGGACAAGAA
JMSF046F21+ CACAATGGAAGCAATGCAGCTTGGCTTGGCTTGATTTTACAAAGACATATTGGACAAGAA
____________________________________________________________
consensus CACAATGGAAGCAATGCAGCTTGGCTTGGCTTGATTTTACAAAGACATATTGGACAAGAA
. : . : . : . : . : . :
JMSF035M04+ TTTTGGGTTACGGCATCAGTGATTTGAGCCAAATCTGAGTGCTTTATGAACTTATGCTTG
JMFF022E11+ TTTTGGGTTACGGCATCAGTGATTTGAGCCAAATCTGAGTGCTTTATGAACTTATGCTTG
JMFF042N13+ TTTTGGGTTACGGCATCAGTGATTTGAGCCAAATCTGAGTGCTTTATGAACTTATGCTTG
JMSF006A20+ TTTTGGGTTACGGCATCAGTGATTTGAGCCAAATCTGAGTGCTTTATGAACTTATGCTTG
JMSF046F21+ TTTTGGGTTACGGCATCAGTGATTTGAGCCAAATCTGAGTGCTTTATGAACTTATGCTTG
____________________________________________________________
consensus TTTTGGGTTACGGCATCAGTGATTTGAGCCAAATCTGAGTGCTTTATGAACTTATGCTTG
. : . : . : . : . : . :
JMSF035M04+ TATATTCGGCAGTGAGTACTTCTTTCTCGTGAAGGAGCCATGAACTGAAGGATAGGTTGG
JMFF022E11+ TATATTCGGCAGTGAGTACTTCTTTCTCGTGAAGGAGCCATGAA
JMFF042N13+ TATATTCGGCAGTGAGTACTTCTTTCTCGTGAAGGAGCCATGAA
JMSF006A20+ TATATTCGGCAGTGAGTACTTCTTTCTCGTGAAGGAGCCATGAA
JMSF046F21+ TATATTCGGCAGTGAGTACTTCTTTCTCGTGAAGGAGCCATGAACTGAAGGATAGGTTGG
____________________________________________________________
consensus TATATTCGGCAGTGAGTACTTCTTTCTCGTGAAGGAGCCATGAACTGAAGGATAGGTTGG
. : . : . : . : . : . :
JMSF035M04+ TTGAAGGTCCCTGGTTCAGCTACTACTAAAGCTGGTTACTTTGATATTGTTCTCTAATCC
JMSF046F21+ TTGAAGGTCCCTGGTCCAGCTACTACTAAAGCTGGTTACTTTGATATTGTTCTCTAATCC
____________________________________________________________
consensus TTGAAGGTCCCTGGTTCAGCTACTACTAAAGCTGGTTACTTTGATATTGTTCTCTAATCC
. : . : . : . : . : . :
JMSF035M04+ ACTGAAGCTAGGGCAGCGGAAGGGGTATGGACAGTGGGCAAAGAACAACAGGGGCT
JMSF046F21+ ACTGAAGCTAGGGCAGCGGAAGGGGTATGGACAGTGGGCAAAGAACAACAGGGGCTCTTC
____________________________________________________________
consensus ACTGAAGCTAGGGCAGCGGAAGGGGTATGGACAGTGGGCAAAGAACAACAGGGGCTCTTC