Contig 005271:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF045C01Sequence480005271 (3)ref|XP_009605565.1|5e-35PREDICTED: putative cyclin-D6-1 [Nicotiana tomentosiformis]
JMSF052G07Sequence721005271 (3)ref|XP_006347185.1|1e-73PREDICTED: putative cyclin-D6-1-like [Solanum tuberosum]651005271 (3)ref|XP_009763360.1|7e-57PREDICTED: putative cyclin-D6-1 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF052G07-                                            CTTTGGGATTTCATTTTCTTGCTATT
                      ____________________________________________________________
consensus                                               CTTTGGGATTTCATTTTCTTGCTATT
 
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rJMSF052G07-          CAAATTTGAAGGTTAATATANCTNNNACTCAACAATATTCTTGGTCGTCGCAAAAATTAT
                      ____________________________________________________________
consensus             CAAATTTGAAGGTTAATATANCTNNNACTCAACAATATTCTTGGTCGTCGCAAAAATTAT
 
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rJMSF052G07-          TCAATCTCCGACGCTTCATGCCGCCGTCTCTCTCCGGCATCATACCACTCTCCCGGTGAA
                      ____________________________________________________________
consensus             TCAATCTCCGACGCTTCATGCCGCCGTCTCTCTCCGGCATCATACCACTCTCCCGGTGAA
 
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rJMSF052G07-          GAACACTTCTCGGTGTCAACGAACAATCANATATTGCATCNATACTTGACTCAATCCCTC
                      ____________________________________________________________
consensus             GAACACTTCTCGGTGTCAACGAACAATCANATATTGCATCNATACTTGACTCAATCCCTC
 
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rJMSF052G07-          TTGTCACCGTTTCTCGCATTACACTTAAACAGTTCAAAATTTCATCACTTTTTACATATT
                      ____________________________________________________________
consensus             TTGTCACCGTTTCTCGCATTACACTTAAACAGTTCAAAATTTCATCACTTTTTACATATT
 
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rJMSF052G07-          CACATCGGAAAATTGCATTCTTAAACGACAAAAACTGCAACGGGATCAACTTTTCAGCTA
                      ____________________________________________________________
consensus             CACATCGGAAAATTGCATTCTTAAACGACAAAAACTGCAACGGGATCAACTTTTCAGCTA
 
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rJMSF052G07-          CATAGAGAAGCGCTGATGCTGCAATTACTGATGGGTTGTACTCAAACAGCTTGATATCGN
                      ____________________________________________________________
consensus             CATAGAGAAGCGCTGATGCTGCAATTACTGATGGGTTGTACTCAAACAGCTTGATATCGN
 
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rJMSF052G07-          ANTGAGAAGTGAAGATGATAGTTGAAGCTCGATGAANAAGAGACTGGGCAATGGAGGGAT
JMSF052G07+             TGAGAAGTGAAGATGATAGTTGAAGCTCGATGAATAAGAGACTGGCCAATGGAGGGAT
                      ____________________________________________________________
consensus             ANTGAGAAGTGAAGATGATAGTTGAAGCTCGATGAATAAGAGACTGGGCAATGGAGGGAT
 
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rJMSF052G07-          CCTCCAGCGGGTACAAGGAAGTAAAGAAATGCAGGAACGAAAATGGCGTGATGGATCNCA
JMSF052G07+           CCTCCAGCGGGTACAAGGAAGTAAAGAAATGCAGGAACGAAAATGGCGTGATGGATCTCA
                      ____________________________________________________________
consensus             CCTCCAGCGGGTACAAGGAAGTAAAGAAATGCAGGAACGAAAATGGCGTGATGGATCTCA
 
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rJMSF052G07-          ATCGCCATTTTAGACAGCTCANAATCATCCCTTCCATCCGATGAATCGATTGGGAATCAA
JMSF052G07+           ATCGCCATTTTAGACAGCTCAGAATCATCCCTTCCATCCGATGAATCGATTGGGAATCAA
                      ____________________________________________________________
consensus             ATCGCCATTTTAGACAGCTCAGAATCATCCCTTCCATCCGATGAATCGATTGGGAATCAA
 
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rJMSF052G07-          ACATCAAACCTTCATCTCTCTGAATATCAGAGAGACATANATCGATGCATCTCATTTTCG
JMSF052G07+           ACATCAAACCTTCATCTCTCTGAATATCAGAGAGACATAAATCGATGCATCTCATTTTCG
                      ____________________________________________________________
consensus             ACATCAAACCTTCATCTCTCTGAATATCAGAGAGACATAAATCGATGCATCTCATTTTCG
 
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rJMSF052G07-          CGGCGAGCGAAAGGNATGAAATTAC                                   
JMSF052G07+           CGGCGAGCGAAAGGCATGAAATTACGAGGATTCGTACAACCCAAGGTTTGTTTTCAAGAA
JMSF045C01+           CGGCGAGCGAAAGGCATGAAATTACGAGGATTCGTACAACCCAAGGTTTGTTTTCAAGAA
                      ____________________________________________________________
consensus             CGGCGAGCGAAAGGCATGAAATTACGAGGATTCGTACAACCCAAGGTTTGTTTTCAAGAA
 
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JMSF052G07+           CTGCTTGTCTGGAGAGGAATCGATCGATGTAATTCATAGCTAGATAGGCTATAGATCGGT
JMSF045C01+           CTGCTTGTCTGGAGAGGAATCGATCGATGTAATTCATAGCTAGATAGGCTATAGATCGGT
                      ____________________________________________________________
consensus             CTGCTTGTCTGGAGAGGAATCGATCGATGTAATTCATAGCTAGATAGGCTATAGATCGGT
 
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JMSF052G07+           CGAACTTGTAAATAAATTGGGTTCGGTAAGTGAGAGAAAAAGCTTCGCGGCGGATGGAGA
JMSF045C01+           CGAACTTGTAAATAAATTGGGTTCGGTAAGTGAGAGAAAAAGCTTCGCGGCGGATGGAGA
                      ____________________________________________________________
consensus             CGAACTTGTAAATAAATTGGGTTCGGTAAGTGAGAGAAAAAGCTTCGCGGCGGATGGAGA
 
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JMSF052G07+           AGGAAATTTGGTGGTTGAAGGAGAGGAGGGAAGGCATGTGATCGGATTCGCCGGCGAAGA
JMSF045C01+           AGGAAATTTGGTGGTTGAAGGAGAGGAGGGAAGGCATGTGATCGGATTCGCCGGCGAAGA
                      ____________________________________________________________
consensus             AGGAAATTTGGTGGTTGAAGGAGAGGAGGGAAGGCATGTGATCGGATTCGCCGGCGAAGA
 
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JMSF052G07+           GAGCCGGAACGGCGTCAAGGTGGTGGTGGTCGTTGAAGCTGCTGGTCAATGGGTTTTCCA
JMSF045C01+           GAGCCGGAACGGCGTCAAGGTGGTGGTGGTCGTTGAAGCTGCTGGTCAATGGGTTTTCCA
                      ____________________________________________________________
consensus             GAGCCGGAACGGCGTCAAGGTGGTGGTGGTCGTTGAAGCTGCTGGTCAATGGGTTTTCCA
 
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JMSF052G07+           GATTGAACTCCATTAGCAGATCAGAGAGAAAAAGTGAAGAAGCTAAGATGAGAGCTTTTT
JMSF045C01+           GATTGAACTCCATTAGCAGATCAGAGAGAAAAAGTGAAGAAGCTAAGATGAGAGCTTTTT
                      ____________________________________________________________
consensus             GATTGAACTCCATTAGCAGATCAGAGAGAAAAAGTGAAGAAGCTAAGATGAGAGCTTTTT
 
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JMSF052G07+           TGTTGACTGGAAATATAATGCAAAGTGAAAACAGGGCATCAGTAGCAGCAGCTTTGCATG
JMSF045C01+           TGTTGACTGGAAATATAATGCAAAGTGAAAACAGGGCATCAGTAGCAGCAGCTTTGCATG
                      ____________________________________________________________
consensus             TGTTGACTGGAAATATAATGCAAAGTGAAAACAGGGCATCAGTAGCAGCAGCTTTGCATG
 
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JMSF052G07+           CTGTGTTGAAAAAACAAGAAACTAAAGTAGAAAACAACTGTTTACACTCTTCACTCTT  
JMSF045C01+           CTGTGTTGAAAAAACAAGAAACTAAAGTAGAAAACAACTGTTTACACTCTTCACTCTTCC
                      ____________________________________________________________
consensus             CTGTGTTGAAAAAACAAGAAACTAAAGTAGAAAACAACTGTTTACACTCTTCACTCTTCC