Contig 005267:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013E18Sequence441005267 (2)ref|XP_006338669.1|6e-09PREDICTED: F-box protein SKIP14-like [Solanum tuberosum]743005805 (2)
JMSF044L10Sequence809005267 (2)ref|XP_009781070.1|3e-22PREDICTED: F-box protein SKIP14-like [Nicotiana sylvestris]746005805 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044L10+ TCGCGCAAAAGATTTGCAAACTTGCTCAA
                      ____________________________________________________________
consensus TCGCGCAAAAGATTTGCAAACTTGCTCAA
 
. : . : . : . : . : . :
JMSF044L10+ CAAAGAGAAGGTCCTCAACACCTAAACGATAAAGGGCCAGAGGCAGAGCATCTGGAGGAG
                      ____________________________________________________________
consensus CAAAGAGAAGGTCCTCAACACCTAAACGATAAAGGGCCAGAGGCAGAGCATCTGGAGGAG
 
. : . : . : . : . : . :
JMSF044L10+ AACCTCCTTCACCCTGGAAACCCTCTCCAGGTAATCCTTCACGCTTGTTGATTTCATCAT
                      ____________________________________________________________
consensus AACCTCCTTCACCCTGGAAACCCTCTCCAGGTAATCCTTCACGCTTGTTGATTTCATCAT
 
. : . : . : . : . : . :
JMSF044L10+ AAAAAATCCAATATTTTTCATAACTGAAATCCATAGTCTCATCCATCTCACAATCCGAAA
                      ____________________________________________________________
consensus AAAAAATCCAATATTTTTCATAACTGAAATCCATAGTCTCATCCATCTCACAATCCGAAA
 
. : . : . : . : . : . :
JMSF044L10+ AGACATGGCCATCAAATTCACCATTCCCAAAATCCATGGCTCCAACTCCAGAGTTCTCAT
                      ____________________________________________________________
consensus AGACATGGCCATCAAATTCACCATTCCCAAAATCCATGGCTCCAACTCCAGAGTTCTCAT
 
. : . : . : . : . : . :
JMSF044L10+ TCATCTTCTCGGCACCTGACTCTGGATGAATCCTCTTGCTACCATTCAATACAAAATCAA
                      ____________________________________________________________
consensus TCATCTTCTCGGCACCTGACTCTGGATGAATCCTCTTGCTACCATTCAATACAAAATCAA
 
. : . : . : . : . : . :
JMSF013E18+ TCAATCACGAACCCAATT
JMSF044L10+ ATCCCGCAAATAACTGATCATCAACTTTCCCAACCCCAATTTTCAATCACGAACCCAATT
                      ____________________________________________________________
consensus ATCCCGCAAATAACTGATCATCAACTTTCCCAACCCCAATTTTCAATCACGAACCCAATT
 
. : . : . : . : . : . :
JMSF013E18+ TCTATGGTATCAATATTCATATCAAATGGATCCTGAGGCAGCAAATCCGCAACATCATCT
JMSF044L10+ TCTATGGTATCAATATTCATATCAAATGGATCCTGAGGCAGCAAATCCGCAACATCATCT
                      ____________________________________________________________
consensus TCTATGGTATCAATATTCATATCAAATGGATCCTGAGGCAGCAAATCCGCAACATCATCT
 
. : . : . : . : . : . :
JMSF013E18+ GAAGCATTACGGATCTCCTCCTTTCTATTGCCCTGAAAATTCCCCTTCCCGCAATCCAAA
JMSF044L10+ GAAGCATTACGGATCTCCTCCTTTCTATTGCCCTGAAAATTCCCCTTCCCGCAATCCAAA
                      ____________________________________________________________
consensus GAAGCATTACGGATCTCCTCCTTTCTATTGCCCTGAAAATTCCCCTTCCCGCAATCCAAA
 
. : . : . : . : . : . :
JMSF013E18+ CCCCAGGATTTACCAAAACAATCCCGATTCTTATCCGGGCGATCTTCCGAGAAACGCCTA
JMSF044L10+ CCCCAGGATTTACCAAAACAATCCCGATTCTTATCCGGGCGATCTTCCGAGAAACGCCTA
                      ____________________________________________________________
consensus CCCCAGGATTTACCAAAACAATCCCGATTCTTATCCGGGCGATCTTCCGAGAAACGCCTA
 
. : . : . : . : . : . :
JMSF013E18+ TTCTGAAAGTTGATCCCACTGCAAAAGCTTCCTCCTTGATTCAAAGCCATCCGGGAACGC
JMSF044L10+ TTCTGAAAGTTGATCCCACTGCAAAAGCTTCCTCCTTGATTCAAAGCCATCCGGGAACGC
                      ____________________________________________________________
consensus TTCTGAAAGTTGATCCCACTGCAAAAGCTTCCTCCTTGATTCAAAGCCATCCGGGAACGC
 
. : . : . : . : . : . :
JMSF013E18+ CCCCTCTTTCCACTCAAAACCTAGCCACAATCAAACAAAAACACCGCATGCCTCGCGATT
JMSF044L10+ CCCCTCTTTCCACTCAAAACCTAGCCACAATCAAACAAAAACACCGCATGCCTCGCGATT
                      ____________________________________________________________
consensus CCCCTCTTTCCACTCAAAACCTAGCCACAATCAAACAAAAACACCGCATGCCTCGCGATT
 
. : . : . : . : . : . :
JMSF013E18+ TTTAGTTAGAAATCCCAAAATGCACAAATATGTACATAACGGCACAACCCTAATTCTCCA
JMSF044L10+ TTTAGTTAGAAATCCCAAAATGCACAAATATGTACATAACGGCACAACCCTAATTCTCCA
                      ____________________________________________________________
consensus TTTAGTTAGAAATCCCAAAATGCACAAATATGTACATAACGGCACAACCCTAATTCTCCA
 
. : . : . : . : . : . :
JMSF013E18+ TAGAATCCGCTGCAAAATATGAGGTTAGGGATGCCACACCAGAAATTTCAGAAATCAC
JMSF044L10+ TAGAATCCGCTGCAAAATATGAGGTTAGGGATGCCACACCAGAAATTTCAGAAATCACTC
                      ____________________________________________________________
consensus TAGAATCCGCTGCAAAATATGAGGTTAGGGATGCCACACCAGAAATTTCAGAAATCACTC