| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014P15 | Sequence | 556 | 005253 (6) | ref|XP_009616503.1| | 1e-102 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis] | 809 | 007309 (7) | ref|XP_008810807.1| | 2e-78 | PREDICTED: chaperonin CPN60-2, mitochondrial [Phoenix dactylifera] |
| JMFF017P15 | Sequence | 556 | 005253 (6) | ref|XP_009616503.1| | 7e-103 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis] | 810 | 007309 (7) | gb|KHG09712.1| | 1e-105 | Chaperonin CPN60-2, mitochondrial [Gossypium arboreum] |
| JMFF024P16 | Sequence | 532 | 005253 (6) | ref|XP_009616503.1| | 4e-97 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis] | 752 | 007309 (7) | gb|KHG09712.1| | 2e-90 | Chaperonin CPN60-2, mitochondrial [Gossypium arboreum] |
| JMFF030K09 | Sequence | 243 | 005253 (6) | ref|XP_009616503.1| | 1e-24 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis] | |||||
| JMSF013H02 | Sequence | 240 | 005253 (6) | ref|XP_009616503.1| | 2e-25 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis] | 737 | 007309 (7) | gb|KHG09712.1| | 5e-96 | Chaperonin CPN60-2, mitochondrial [Gossypium arboreum] |
| JMSF041P16 | Sequence | 722 | 005253 (6) | ref|XP_009616503.1| | 3e-112 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis] | 588 | 007309 (7) | ref|XP_010264000.1| | 1e-53 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nelumbo nucifera] |
This contig is upended
. : . : . : . : . : . :
JMSF041P16+ CC
____________________________________________________________
consensus CC
. : . : . : . : . : . :
JMFF014P15+ CTTCAGGTTTGTTACAACA
JMFF017P15+ CTTCAGGTTTGTTACAACA
JMSF041P16+ TGGGCAATTTCCTCTGATGTACTAATCATCCGGGCTCTGCTCTTCAGGTTTGTTACAACA
____________________________________________________________
consensus TGGGCAATTTCCTCTGATGTACTAATCATCCGGGCTCTGCTCTTCAGGTTTGTTACAACA
. : . : . : . : . : . :
JMFF014P15+ GAATCAACAGCCATGGTAATGCCACGTCTCAAATCCATCGCATTCATACCAGCTGCAACT
JMFF024P16+ AACAGCCATGGTAATGCCACGTCTCAAATCCATCGCATTCATACCAGCTGCAACT
JMFF017P15+ GAATCAACAGCCATGGTAATGCCACGTCTCAAATCCATCGCATTCATACCAGCTGCAACT
JMSF041P16+ GAATCAACAGCCATGGTAATGCCACGTCTCAAATCCATCGCATTCATACCAGCTGCAACT
____________________________________________________________
consensus GAATCAACAGCCATGGTAATGCCACGTCTCAAATCCATCGCATTCATACCAGCTGCAACT
. : . : . : . : . : . :
JMFF014P15+ GACTTACAGCCCTCAGCGAATATTGCCCGGGTGAGGACTGTTGCACAAGTCGTACCATCA
JMFF024P16+ GACTTACAGCCCTCAGCGAATATTGCCCGGGTGAGGACTGTTGCACAAGTCGTACCATCA
JMFF017P15+ GACTTACAGCCCTCAGCGAATATTGCCCGGGTGAGGACTGTTGCACAAGTCGTACCATCA
JMSF041P16+ GACTTACAGCCCTCAGCGAATATTGCCCGGGTGAGGACTGTTGCACAAGTCGTACCATCA
____________________________________________________________
consensus GACTTACAGCCCTCAGCGAATATTGCCCGGGTGAGGACTGTTGCACAAGTCGTACCATCA
. : . : . : . : . : . :
JMFF014P15+ CCAGCAACATCATTAGTAGCATTAGCCACTTGCTTTACAAGGCTTGCTCCAACATTCTTG
JMFF024P16+ CCAGCAACATCATTAGTAGCATTAGCCACTTGCTTTACAAGGCTTGCTCCAACATTCTTG
JMFF017P15+ CCAGCAACATCATTAGTAGCATTAGCCACTTGCTTTACAAGGCTTGCTCCAACATTCTTG
JMSF041P16+ CCAGCAACATCATTAGTAGCATTAGCCACTTGCTTTACAAGGCTTGCTCCAACATTCTTG
____________________________________________________________
consensus CCAGCAACATCATTAGTAGCATTAGCCACTTGCTTTACAAGGCTTGCTCCAACATTCTTG
. : . : . : . : . : . :
JMFF014P15+ ACTTTGTTATTGAATTCAACACTTTTTGCAACAGTGACACCATCTTTTGTCACTTTGGGA
JMFF024P16+ ACTTTGTTATTGAATTCAACACTTTTTGCAACAGTGACACCATCTTTTGTCACTTTGGGA
JMFF017P15+ ACTTTGTTATTGAATTCAACACTTTTTGCAACAGTGACACCATCTTTTGTCACTTTGGGA
JMSF041P16+ ACTTTGTTATTGAATTCAACACTTTTTGCAACAGTGACACCATCTTTTGTCACTTTGGGA
____________________________________________________________
consensus ACTTTGTTATTGAATTCAACACTTTTTGCAACAGTGACACCATCTTTTGTCACTTTGGGA
. : . : . : . : . : . :
JMSF013H02+ ACT
JMFF014P15+ GCACCCCAACTTTGTTCAATCACAACATTACGCCCCTTTGGACCCATGGTGACTTTAACT
JMFF024P16+ GCACCCCAACTTTGTTCAATCACAACATTACGCCCCTTTGGACCCATGGTGACTTTAACT
JMFF017P15+ GCACCCCAACTTTGTTCAATCACAACATTACGCCCCTTTGGACCCATGGTGACTTTAACT
JMFF030K09+ CT
JMSF041P16+ GCACCCCAACTTTGTTCAATCACAACATTACGCCCCTTTGGACCCATGGTGACTTTAACT
____________________________________________________________
consensus GCACCCCAACTTTGTTCAATCACAACATTACGCCCCTTTGGACCCATGGTGACTTTAACT
. : . : . : . : . : . :
JMSF013H02+ GCATCAGCAAGCTCTTCTACACCCTGGAGCATCAATGCCCGAGCTTCCACTCCAAATCTT
JMFF014P15+ GCATCAGCAAGCTCTTCTACACCCTGGAGCATCAATGCCCGAGCTTCCACTCCAAATCTT
JMFF024P16+ GCATCAGCAAGCTCTTCTACACCCTGGAGCATCAATGCCCGAGCTTCCACTCCAAATCTT
JMFF017P15+ GCATCAGCAAGCTCTTCTACACCCTGGAGCATCAATGCCCGAGCTTCCACTCCAAATCTT
JMFF030K09+ GCATCAGCAAGCTTTTCTACACCCTGGAGCATCAATGCCCGAGCTTCCACTCCAAATCTT
JMSF041P16+ GCATCAGCAAGCTCTTCTACACCCTGGAGCATCAATGCCCGAGCTTCCACTCCAAATCTT
____________________________________________________________
consensus GCATCAGCAAGCTCTTCTACACCCTGGAGCATCAATGCCCGAGCTTCCACTCCAAATCTT
. : . : . : . : . : . :
JMSF013H02+ ATATCTTTGGCAGCATAGTTTCTACTCCAACTTAAACTACTACCAATCTGTTGGGTGCTG
JMFF014P15+ ATATCTTTGGCAGCATAGTTTCTACTCCAACTTAAACTACTACCAATCTGTTGGGTGCTG
JMFF024P16+ ATATCTTTGGCAGCATAGTTTCTACTCCAACTTAAACTACTACCAATCTGTTGGGTGCTG
JMFF017P15+ ATATCTTTGGCAGCATAGTTTCTACTCCAACTTAAACTACTACCAATCTGTTGGGTGCTG
JMFF030K09+ ATATCTTTGGCAGCATAGTTTCTACTCCAACTTAAACTACTACCAATCTGTTGGGTGCTG
JMSF041P16+ ATATCTTTGGCAGCATAGTTTCTACTCCAACTTAAACTACTACCAATCTGTTGGGTGCTG
____________________________________________________________
consensus ATATCTTTGGCAGCATAGTTTCTACTCCAACTTAAACTACTACCAATCTGTTGGGTGCTG
. : . : . : . : . : . :
JMSF013H02+ TTCTTAGCGACCCTGGCCTTAGAGGCAAGATTTGCTGCAAAACGATACATGATTTTGACG
JMFF014P15+ TTCTTAGCGACCCTGGCCTTAGAGGCAAGATTTGCTGCAAAACGATACATGATTTTGACG
JMFF024P16+ TTCTTAGCGACCCTGGCCTTAGAGGCAAGATTTGCTGCAAAACGATACATGATTTTGACG
JMFF017P15+ TTCTTAGCGACCCTGGCCTTAGAGGCAAGATTTGCTGCAAAACGATACATGATTTTGACG
JMFF030K09+ TTCTTAGCGACCCTGGCCTTAGAGGCAAGATTTGCTGCAAAACGATACATGATTTTGACG
JMSF041P16+ TTCTTAGCGACCCTGGCCTTAGAGGCAAGATTTGCTGCAAAACGATACATGATTTTGACG
____________________________________________________________
consensus TTCTTAGCGACCCTGGCCTTAGAGGCAAGATTTGCTGCAAAACGATACATGATTTTGACG
. : . : . : . : . : . :
JMSF013H02+ AGAAGTTTCCGCTGATGATAGAAAGATTCAGTTATGTGGACGAAGAGATAGCAG
JMFF014P15+ AGAAGTTTCCGCTGATGATAGAAAGATTCAGTTATGTGGACGAAGAGATAGCAGAGC
JMFF024P16+ AGAAGTTTCCGCTGATGATAGAAAGATTCAGTTATGTGGACGAAGAGATAGCTGAGC
JMFF017P15+ AGAAGTTTCCGCTGATGATAGAAAGATTCAGTTATGTGGACGAAGAGATAGCTGAGC
JMFF030K09+ AGAAGTTTCCGCTGATGATAGAAAGATTCAGTTATGTGGACGAAGAGATAGCAGAGC
JMSF041P16+ AGAAGTTTCCGCTGATGATAGAAAGATTCAGTTATGTGGAAGAAGAGATAGCAGAGCAAG
____________________________________________________________
consensus AGAAGTTTCCGCTGATGATAGAAAGATTCAGTTATGTGGACGAAGAGATAGCAGAGCAAG
. : . : . : . : . : . :
JMSF041P16+ AAGTGCGGTTGCAGTGAAGCAGGGGGTTATATATGACTAGAGGCAGAGAAAAGTCTAGAA
____________________________________________________________
consensus AAGTGCGGTTGCAGTGAAGCAGGGGGTTATATATGACTAGAGGCAGAGAAAAGTCTAGAA
. : . : . : . : . : . :
JMSF041P16+ GGAGGAGCTTCTAGGGTTTTGGGGGTTTATCTTGTTAAGGGTTTAAGTTTCAAACCCCCC
____________________________________________________________
consensus GGAGGAGCTTCTAGGGTTTTGGGGGTTTATCTTGTTAAGGGTTTAAGTTTCAAACCCCCC