Contig 005249:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010H15Sequence428005249 (4)dbj|BAE06271.1|5e-06cyclin A [Scutellaria baicalensis]764005783 (4)ref|XP_009796391.1|5e-57PREDICTED: cyclin-A1-4 [Nicotiana sylvestris] emb|CAA63543.1| cyclin A-like prot
JMSF041E17Sequence863005249 (4)ref|XP_011102309.1|3e-63PREDICTED: cyclin-A1-1 [Sesamum indicum]721005783 (4)ref|XP_009796391.1|7e-57PREDICTED: cyclin-A1-4 [Nicotiana sylvestris] emb|CAA63543.1| cyclin A-like prot
JMSF042L07Sequence716005249 (4)ref|XP_011102309.1|1e-25PREDICTED: cyclin-A1-1 [Sesamum indicum]683005783 (4)ref|XP_009796391.1|2e-49PREDICTED: cyclin-A1-4 [Nicotiana sylvestris] emb|CAA63543.1| cyclin A-like prot
JMSF044P23Sequence745005249 (4)ref|XP_011102309.1|4e-43PREDICTED: cyclin-A1-1 [Sesamum indicum]343005783 (4)gb|ADA70359.1|6e-10mitotic cyclin A1-like protein [Persea americana]

Alignment

This contig is upended


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JMSF041E17+                                                TCAGATGCTCGCAAGTGCTTGTA
                      ____________________________________________________________
consensus                                                  TCAGATGCTCGCAAGTGCTTGTA
 
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JMSF041E17+           GATATCACAGGCCATGGTTGCACAGAATTGAGGGTCCTCAAGATTATCATCAATGTTAGG
                      ____________________________________________________________
consensus             GATATCACAGGCCATGGTTGCACAGAATTGAGGGTCCTCAAGATTATCATCAATGTTAGG
 
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JMSF044P23+                               TGTCCACAATTATGTCTCTCTTGCATATATTTCCTGTTGT
JMSF042L07+                                                                  GTTGT
JMSF041E17+           AATGCGATCCCTTGACTCTATGTCCACAATTATGTCTCTCTTGCATATATTTCCTGTTGT
                      ____________________________________________________________
consensus             AATGCGATCCCTTGACTCTATGTCCACAATTATGTCTCTCTTGCATATATTTCCTGTTGT
 
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JMSF044P23+           TTCTTGGTGTTCCGAAATATAGAGCGCACTAGATGCCTTCTTCTCAATGGAATGAACTCC
JMSF042L07+           TTCTTGGTGTTCCGAAATATAGAGCGCACTAGATGCCTTCTTCTCAATGGAATGAACTCC
JMSF041E17+           TTCTTGGTGTTCCGAAATATAGAGCGCACTAGATGCCTTCTTCTCAATGGAATGAACTCC
                      ____________________________________________________________
consensus             TTCTTGGTGTTCCGAAATATAGAGCGCACTAGATGCCTTCTTCTCAATGGAATGAACTCC
 
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JMSF044P23+           AGCAGTTTCATTGTTGTCAATATATTCAACTTCTGGACTTCTTAGTGAATCACAAGGAGA
JMSF042L07+           AGCAGTTTCA-TGTTGTTAATATATTCAACTTCTGGACTTCTTAGTGAATCACAAGGAGA
JMSF041E17+           AGCAGTTTCATTGTTGTCAATATATTCAACTTCTGGACTTCTTAGTGAATCACAAGGAGA
                      ____________________________________________________________
consensus             AGCAGTTTCATTGTTGTCAATATATTCAACTTCTGGACTTCTTAGTGAATCACAAGGAGA
 
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JMSF044P23+           CATGGATTCATCCATAGAAGCCGTCATCCCATCCGACTTAGCTGGAGAATTATCCATGCT
JMSF042L07+           CATGGATTCATCCATAGAAGCCGTCATCCCATCCGACTTAGCTGGAGAATTATCCATGCT
JMSF041E17+           CATGGATTCATCCATAGAAGCCGTCATCCCATCCGACTTAGCTGGAGAATTATCCATGCT
                      ____________________________________________________________
consensus             CATGGATTCATCCATAGAAGCCGTCATCCCATCCGACTTAGCTGGAGAATTATCCATGCT
 
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JMSF044P23+           GCATGTGACAGGAGGGAGGGTGGCCTTCTGGAGAATAGCATCACTTCCAATAGCAGATGG
JMSF042L07+           GCATGTGACAGGAGGGAGGGTGGCCTTCTGGAGAATAGCATCACTTCCAATAGCAGATGG
JMSF041E17+           GCATGTGACAGGAGGGAGGGTGGCCTTCTGGAGAATAGCATCACTTCCAATAGCAGATGG
                      ____________________________________________________________
consensus             GCATGTGACAGGAGGGAGGGTGGCCTTCTGGAGAATAGCATCACTTCCAATAGCAGATGG
 
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JMSF044P23+           TCCCTTACTGGGTACTGTGATAGGTTTCACAAGGGTGGATGTTGGCACGATCGAAGTCCC
JMSF042L07+           TCCCTTACTGGGTACTGTGATAGGTTTCACAAGGGTGGATGTTGGCACGATCGAAGTCCC
JMSF010H15+                                                       GCACGATCGAAGTCCC
JMSF041E17+           TCCCTTACTGGGTACTGTGATAGGTTTCACAAGGGTGGATGTTGGCACGATCGAAGTCCC
                      ____________________________________________________________
consensus             TCCCTTACTGGGTACTGTGATAGGTTTCACAAGGGTGGATGTTGGCACGATCGAAGTCCC
 
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JMSF044P23+           TAAGAATCCAGCATTACCCGTAGAACTAGAAGAACTCTTCTTGATACCAACATTCTTCGA
JMSF042L07+           TAAGAATCCAGCATTACCCGTAGAACTAGAAGAACTCTTCTTGATACCAACATTCTTCGA
JMSF010H15+           TAAGAATCCAGCATTACCCGTAGAACTAGAAGAACTCTTCTTGATACCAACATTCTTCGA
JMSF041E17+           TAAGAATCCAGCATTACCCGTAGAACTAGAAGAACTCTTCTTGATACCAACATTCTTCGA
                      ____________________________________________________________
consensus             TAAGAATCCAGCATTACCCGTAGAACTAGAAGAACTCTTCTTGATACCAACATTCTTCGA
 
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JMSF044P23+           TGTGCAGGGCGCAATGCTCGAGGATTCGGAGAAGGTGCTTCGCGAGGAAAGCAGAGAGCC
JMSF042L07+           TGTGCAGGGCGCAATGCTCGAGGATTCGGAGAAGGTGCTTCGCGAGGAAAGCAGAGAGCC
JMSF010H15+           TGTGCAGGGCGCAATGCTCGAGGATTCGGAGAAGGTGCTTCGCGAGGAAAGCAGAGAGCC
JMSF041E17+           TGTGCAGGGCGCAATGCTCGAGGATTCGGAGAAGGTGCTTCGCGAGGAAAGCAGAGAGCC
                      ____________________________________________________________
consensus             TGTGCAGGGCGCAATGCTCGAGGATTCGGAGAAGGTGCTTCGCGAGGAAAGCAGAGAGCC
 
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JMSF044P23+           GGTCCTCTGGTTGGTGATGTTGGTGAGCGCGGGGCGTTTATGGGCCAGGCGTTGGTCGGC
JMSF042L07+           GGTCCTCTGGTTGGTGATGTTGGTGAGCGCGGGGCGTTTATGGGCCAGGCGTTGGTCGGC
JMSF010H15+           GGTCCTCTGGTTGGTGATGTTGGTGAGCGCGGGGCGTTTATGGGCCAGGCGTTGGTCGGC
JMSF041E17+           GGTCCTCTGGTTGGTGATGTTGGTGAGCGCGGGGCGTTTATGGGCCAGGCGTTGGTCGGC
                      ____________________________________________________________
consensus             GGTCCTCTGGTTGGTGATGTTGGTGAGCGCGGGGCGTTTATGGGCCAGGCGTTGGTCGGC
 
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JMSF044P23+           GGCCGCCGCGACCTTTCCGTGGCGATTTTCCGCCGCCGCCGCCGCCTGCCTCTTGGCCGC
JMSF042L07+           GGCCGCCGCGACCTTTCCGTGGCGATTTTCCGCCGCCGCCGCCGCCTGCCTCTTGGCCGC
JMSF010H15+           GGCCGCCGCGACCTTTCCGTGGCGATTTTCCGCCGCCGCCGCCGCCTGCCTCTTGGCCGC
JMSF041E17+           GGCCGCCGCGACCTTTCCGTGGCGATTTTCCGCCGCCGCCGCCGCCTGCCTCTTGGCCGC
                      ____________________________________________________________
consensus             GGCCGCCGCGACCTTTCCGTGGCGATTTTCCGCCGCCGCCGCCGCCTGCCTCTTGGCCGC
 
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JMSF044P23+           TGCATTGGAAGCCGAGGAAGAGCGCCGAGTTTGTGCTGTGGTCGCCATTAATCCCGTGTG
JMSF042L07+           TGCATTGGAAGCCGAGGAAGAGCGCCGAGTTTGTGCTGTGGTCGCCATTAATCCCGTGTG
JMSF010H15+           TGCATTGGAAGCCGAGGAAGAGCGCCGAGTTTGTGCTGTGGTCGCCATTAATCCCGTGTG
JMSF041E17+           TGCATTGGAAGCCGAGGAAGAGCGCCGAGTTTGTGCTGTGGTCGCCATTAATCCCGTGTG
                      ____________________________________________________________
consensus             TGCATTGGAAGCCGAGGAAGAGCGCCGAGTTTGTGCTGTGGTCGCCATTAATCCCGTGTG
 
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JMSF044P23+           TCTGAGAAACCTTGAATTCCTCTGAACACAAAGCACTAGGGCTCTGCTCTGAACTGCACT
JMSF042L07+           TCTGAGAAACCTTGAATTCCTCTGAACACAAAGCACTAGGGCTCTGCTCTGAACTGCACT
JMSF010H15+           TCTGAGAAACCTTGAATTCCTCTGAACACAAAGCACTAGGGCTCTGCTCTGAACTGCACT
JMSF041E17+           TCTGAGAAACCTTGAATTCCTCTGAACACAAAGCACTAGGGCTCTGCTCTGAACTGCACT
                      ____________________________________________________________
consensus             TCTGAGAAACCTTGAATTCCTCTGAACACAAAGCACTAGGGCTCTGCTCTGAACTGCACT
 
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JMSF044P23+           CTATTATTCTGTTGGGTTTAATTGAAAGAGAAGACGAAAAGAAT                
JMSF042L07+           CTATTATTCTGTTGGGTTTAATTGAAAGAGAAGACGAAAAGAAT                
JMSF010H15+           CTATTATTCTGTTGGGTTTAATTGAAAGAGAAGACGAAAAGAAT                
JMSF041E17+           CTATTATTCTGTTGGGTTTAATTGAAAGAGAAGACGAAAAGAATGAGGAACGCGTAGGCC
                      ____________________________________________________________
consensus             CTATTATTCTGTTGGGTTTAATTGAAAGAGAAGACGAAAAGAATGAGGAACGCGTAGGCC