Contig 005248:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012P21Sequence319005248 (3)gb|EYU22973.1|2e-07hypothetical protein MIMGU_mgv1a002244mg [Erythranthe guttata]677005625 (3)ref|XP_006344883.1|8e-70PREDICTED: probable WRKY transcription factor 20-like [Solanum tuberosum]
JMSF037J19Sequence652005248 (3)ref|XP_009765658.1|2e-92PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Nicotiana sylvestri110001397 (2)
JMSF041E04Sequence775005248 (3)ref|XP_009765658.1|8e-97PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Nicotiana sylvestri105018302

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+                                           GCCCACAAATCACAGTCGTAACTTCTGT
JMSF041E04+                TGTCAACGAGCTTCTTCAGTTCTTTTTGCCCACAAATCACAGTCGTAACTTCTGT
                      ____________________________________________________________
consensus                  TGTCAACGAGCTTCTTCAGTTCTTTTTGCCCACAAATCACAGTCGTAACTTCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+           CTCATTTAAAGAGTAGCAGAGAGCTTCTTCCCCCAAAGATGCATAAATAGTTACCACAGT
JMSF041E04+           CTCATTTAAAGAGTAGCAGAGAGCTTCTTCCCCCAAAGATGCATAAATAGTTACCACAGT
                      ____________________________________________________________
consensus             CTCATTTAAAGAGTAGCAGAGAGCTTCTTCCCCCAAAGATGCATAAATAGTTACCACAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+           CACATTGCGCCTAAAGCAAGCCTGAAGTGCAACGAACCATTCTCCACACGTGTCCGCAAA
JMSF041E04+           CACATTGCGCCTAAAGCAAGCCTGAAGTGCAACGAACCATTCTCCACACGTGTCCGCAAA
                      ____________________________________________________________
consensus             CACATTGCGCCTAAAGCAAGCCTGAAGTGCAACGAACCATTCTCCACACGTGTCCGCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+           AATGGCTACACGCTCTTCTCTTTTATGCCCGAGATGTACTAATCCAGACGAAAAGTTGCA
JMSF041E04+           AATGGCTACACGCTCTTCTCTTTTATGCCCGAGATGTACTAATCCAGACGAAAAGTTGCA
                      ____________________________________________________________
consensus             AATGGCTACACGCTCTTCTCTTTTATGCCCGAGATGTACTAATCCAGACGAAAAGTTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+           CACGAGCTCAAAAGCTTCCCTATAACTCAACCACTCATAATCACCCAAGTGAAGCTTCTC
JMSF041E04+           CACGAGCTCAAAAGCTTCCCTATAACTCAACCACTCATAATCACCCAAGTGAAGCTTCTC
                      ____________________________________________________________
consensus             CACGAGCTCAAAAGCTTCCCTATAACTCAACCACTCATAATCACCCAAGTGAAGCTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+           AAATGACCTTCCATCCAAAGATGCCTCCATCTCTCTCGAAATAAGCCTCCGAGTCCCGAG
JMSF041E04+           AAATGACCTTCCATCCAAAGATGCCTCCATCTCTCTCGAAATAAGCCTCCGAGTCCCGAG
                      ____________________________________________________________
consensus             AAATGACCTTCCATCCAAAGATGCCTCCATCTCTCTCGAAATAAGCCTCCGAGTCCCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+           TAACTTCTTGTCACAATACTTTTTGCAAGAATATTCAAAAAGCTCGGCGAGAGTTGTAAC
JMSF041E04+           TAACTTCTTGTCACAATACTTTTTGCAAGAATATTCAAAAAGCTCGGCGAGAGTTGTAAC
                      ____________________________________________________________
consensus             TAACTTCTTGTCACAATACTTTTTGCAAGAATATTCAAAAAGCTCGGCGAGAGTTGTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+           ACCTTCCCACGCTGTTTCCACAGGGGTGGCATACCGATAGTTTCGAATAGCATAGCCAGG
JMSF012P21+                              ACAGGGGTGGCATACCGATAGTTTCGAATAGCATAGCCAGG
JMSF041E04+           ACCTTCCCACGCTGTTTCCACAGGGGTGGCATACCGATAGTTTCAAATAGCATAGCCAGG
                      ____________________________________________________________
consensus             ACCTTCCCACGCTGTTTCCACAGGGGTGGCATACCGATAGTTTCGAATAGCATAGCCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+           CTCCCCACCCACATCAACAAGGACACCGCGTTTTTTCCTATTCTTTGAGTTTCGAAGCAA
JMSF012P21+           CTCCCCACCCACATCAACAAGGACACCGCGTTTTTTCCTATTCTTTGAGTTTCGAAGCAA
JMSF041E04+           CTCCCCACCCACATCAACAAGGACACCGCGTTTTTTCCTATTCTTTGAGTTTCGAAGCAA
                      ____________________________________________________________
consensus             CTCCCCACCCACATCAACAAGGACACCGCGTTTTTTCCTATTCTTTGAGTTTCGAAGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+           AAGTGTAACTACGAGTGGAACAAGGACACCAACTATATAGGCTCCCATCTAGTTGGCCCT
JMSF012P21+           AAGTGTAACTACGAGTGGAACAAGGACACCAACTATATAGGCTCCCATCTAGTTGGCCCT
JMSF041E04+           AAGTGTAACTACGAGTGGAACAAGGACACCAACTATATAGGCTCCCATCTAGTTGGCCCT
                      ____________________________________________________________
consensus             AAGTGTAACTACGAGTGGAACAAGGACACCAACTATATAGGCTCCCATCTAGTTGGCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+           TTAAATTCTGCTCTTAAAATGGAGGAGAAAACAGAATTTTTGTTTTGTTTCAATAAAATC
JMSF012P21+           TTAAATTCTGCTCTTAAAATGGAGGAGAAAACAGAATTTTTGTTTTGTTTCAATAAAATC
JMSF041E04+           TTAAATTCTGCTCTTAAAATGGAGGAGAAAACAGAATTTTTGTTTTGTTTCAATAAAATC
                      ____________________________________________________________
consensus             TTAAATTCTGCTCTTAAAATGGAGGAGAAAACAGAATTTTTGTTTTGTTTCAATAAAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037J19+           CCATTACAAGAACTTAAAGAGGT                                     
JMSF012P21+           CCATTACAAGAACTTAAAGAGGTGAAAAGAAGCAAGAGGACGCGTTAGTTTTGGGGTCTT
JMSF041E04+           CCATTACAAGAACTTAAAGAGGTGAAAAGAAGCAAGAGGACGCGTTAGTTTTGGGGTCTT
                      ____________________________________________________________
consensus             CCATTACAAGAACTTAAAGAGGTGAAAAGAAGCAAGAGGACGCGTTAGTTTTGGGGTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012P21+           TGTGGGGTGGACTGCGGAGCAATCGAGGACTCTACTC                       
JMSF041E04+           TGTGGGGTGGACTGCGGAGCAATCGAGGACTCTACTCAAGTTGGAGACTTGGGAGTTTCC
                      ____________________________________________________________
consensus             TGTGGGGTGGACTGCGGAGCAATCGAGGACTCTACTCAAGTTGGAGACTTGGGAGTTTCC