Contig 005241:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS065C08Sequence620005241 (3)gb|AIL90731.1|6e-60hypothetical protein POPTRDRAFT_551188, partial [Populus pamirica]
JMFS076F10Sequence649005241 (3)gb|AIL90733.1|7e-59hypothetical protein POPTRDRAFT_551188, partial [Populus suaveolens]
JMSF040L20Sequence346005241 (3)886021554ref|XP_011022066.1|4e-06PREDICTED: alanine--tRNA ligase [Populus euphratica]

Alignment

This contig is upended


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JMFS065C08+                                                                    TGA
JMFS076F10+                            GATCTCGGCGAAACCCGTCGGGATAACGCACAATTCTCCCTGA
                      ____________________________________________________________
consensus                              GATCTCGGCGAAACCCGTCGGGATAACGCACAATTCTCCCTGA
 
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JMFS065C08+           CGACAGCCCAATAGCGAGCATTTTGGCGCGATCTCCACAGTTTTTGAGCTGGTAGTTATA
JMFS076F10+           CGACAGCCCAATAGCGAGCATTTTGGCGCGATCTCCACAGTTTNTGAGCTGGTAGTTATA
                      ____________________________________________________________
consensus             CGACAGCCCAATAGCGAGCATTTTGGCGCGATCTCCACAGTTTTTGAGCTGGTAGTTATA
 
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JMFS065C08+           CAGCAGCTTGAGTTCTGCTAAGGTTTTCTCCATCTCATGAACGGTTCGAGTGCAATAAAG
JMFS076F10+           CAGCAGCTTGAGTTCTGCTAAGGTTTTCTCCATCTCATGAACGGTTCGAGTGCAATAAAG
                      ____________________________________________________________
consensus             CAGCAGCTTGAGTTCTGCTAAGGTTTTCTCCATCTCATGAACGGTTCGAGTGCAATAAAG
 
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JMFS065C08+           GAGCTTAATCTTATCAGCCGGCTTCGACAGCTGGTAACTGGTGATCAAAGACAGCAAGGC
JMFS076F10+           GAGCTTAATCTTATCAGCCGGCTTCGACAGCTGGTAACTGGTGATCAAAGACAGCAAGGC
                      ____________________________________________________________
consensus             GAGCTTAATCTTATCAGCCGGCTTCGACAGCTGGTAACTGGTGATCAAAGACAGCAAGGC
 
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JMFS065C08+           TATGGTTTTTCCGGTCCCCGTCGGCATCTCCAGAAGGCAGTGGCCTTTAGCATCCAACGC
JMFS076F10+           TATGGTTTTTCCGGTCCCCGTCGGCATCTCCAGAAGGCAGTGGCCTTTAGCATCCAACGC
                      ____________________________________________________________
consensus             TATGGTTTTTCCGGTCCCCGTCGGCATCTCCAGAAGGCAGTGGCCTTTAGCATCCAACGC
 
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JMFS065C08+           ACGCTTCAGCTCCAGCATATACTGGTACTGCTCGGGGTATATGTTGTCGTACGGAAAGTA
JMFS076F10+           ACGCTTCAGCTCCAGCATATACTGGTACTGCTCGGGGTATATGTTGTCGTACGGAAAGTA
                      ____________________________________________________________
consensus             ACGCTTCAGCTCCAGCATATACTGGTACTGCTCGGGGTATATGTTGTCGTACGGAAAGTA
 
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JMFS065C08+           CACCACTACGTCTTCGATTTGGAACTTCATCTCTCCCCACCGTCTCTCTTTCTCTGTTGA
JMFS076F10+           CACCACTACGTCTTCGATTTGGAACTTCATCTCTCCCCACCGTCTCTCTTTCTCTGTTGA
                      ____________________________________________________________
consensus             CACCACTACGTCTTCGATTTGGAACTTCATCTCTCCCCACCGTCTCTCTTTCTCTGTTGA
 
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JMFS065C08+           ATCTCCGATGGATCCCCGACCTTGATTCACAGGGGAGGCTAAGGCGGAGAACGGGCAGCA
JMFS076F10+           ATCTCCGATGGATCCCCGACCTTGATTCACAGGGGAGGCTAAGGCGGAGAACGGGCAGCA
                      ____________________________________________________________
consensus             ATCTCCGATGGATCCCCGACCTTGATTCACAGGGGAGGCTAAGGCGGAGAACGGGCAGCA
 
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JMFS065C08+           GCTTCGTCGTCTGCAGGGGCTGAGGCAGAGACCGGACAGCAGCTTCGTCGTCGGCAGGGG
JMFS076F10+           GCTTCGTCGTCTGCAGGGGCTGAGGCAGAGACCGGACAGCAGCTTCGTCGTCGGCAGGGG
JMSF040L20+                                                         GTCGTCGGCAAGGG
                      ____________________________________________________________
consensus             GCTTCGTCGTCTGCAGGGGCTGAGGCAGAGACCGGACAGCAGCTTCGTCGTCGGCAGGGG
 
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JMFS065C08+           CTGAGGCGGAGACTAGACAGTAGCTTCGTCGTCGGCAAGGGCGGAGGCGGAGACCGGAGA
JMFS076F10+           CTGAGGCGGAGACTAGACAGTAGCTTCGTCGTCGGCAAGGGCGGAGGCGGAGACCGGAGA
JMSF040L20+           CTGAGGCGTAGACCGGGCAGTAGCTTCGTCATCGACAAGGGCAGAGGCGGAGACCGGAGC
                      ____________________________________________________________
consensus             CTGAGGCGGAGACTAGACAGTAGCTTCGTCGTCGGCAAGGGCGGAGGCGGAGACCGGAGA
 
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JMFS065C08+           GGAGACGCGGAGTCTTCCGGTGTCGTCGACAGC                           
JMFS076F10+           GGAGACGCGGAGTCTTCCGGTGTCGTCGACAGC                           
JMSF040L20+           AGAGACGCTGAGTCCTCCGGTGTCGTCGACAGCGTTTGTGGTCGAAACTCGGCGGAGGCT
                      ____________________________________________________________
consensus             GGAGACGCGGAGTCTTCCGGTGTCGTCGACAGCGTTTGTGGTCGAAACTCGGCGGAGGCT
 
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JMSF040L20+           GAGGCGGAGTCTTCCGGTGTTGCTATCGGCTAAGTTAGGGCTTGGGAGTTGGGGGAACTC
                      ____________________________________________________________
consensus             GAGGCGGAGTCTTCCGGTGTTGCTATCGGCTAAGTTAGGGCTTGGGAGTTGGGGGAACTC