clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF040G13 | Sequence | 635 | 005239 (2) | ref|XP_002267614.1| | 2e-49 | PREDICTED: acyl carrier protein 1, chloroplastic [Vitis vinifera] emb|CBI35660.3 | 581 | 005239 (2) | ref|XP_002267614.1| | 1e-49 | PREDICTED: acyl carrier protein 1, chloroplastic [Vitis vinifera] emb|CBI35660.3 |
This contig is upended
. : . : . : . : . : . :
rJMSF040G13+ GACTTTGTTTTAGTAGATAGGGTGGGGATTCCATG
JMSF040G13- GACTTTGTTTTAGTAGATAGGGTGGGGATTCCATG
____________________________________________________________
consensus GACTTTGTTTTAGTAGATAGGGTGGGGATTCCATG
. : . : . : . : . : . :
rJMSF040G13+ GCTGCTATTTCAGCTACCTGTTTCAGACTCCAAACTTCAGTAAAACAGCCTTCCAAGACT
JMSF040G13- GCTGCTATTTCAGCTACCTGTTTCAGACTCCAAACTTCAGTAAAACAGCCTTCCAAGACT
____________________________________________________________
consensus GCTGCTATTTCAGCTACCTGTTTCAGACTCCAAACTTCAGTAAAACAGCCTTCCAAGACT
. : . : . : . : . : . :
rJMSF040G13+ ATCCAGATAGAGGGAAGAAGTACTGCAAGGTTGAATTTGGTATGTGTAGGTAAAACAAGG
JMSF040G13- ATCCAGATAGAGGGAAGAAGTACTGCAAGGTTGAATTTGGTATGTGTAGGTAAAACAAGG
____________________________________________________________
consensus ATCCAGATAGAGGGAAGAAGTACTGCAAGGTTGAATTTGGTATGTGTAGGTAAAACAAGG
. : . : . : . : . : . :
rJMSF040G13+ ACTGGTTTCCCTTCCTTGACAACAACCCGCCGCTTCCACGTCTGTTGTGCGGCCAAAACA
JMSF040G13- ACTGGTTTCCCTTCCTTGACAACAACCCGCCGCTTCCACGTCTGTTGTGCGGCCAAAACA
____________________________________________________________
consensus ACTGGTTTCCCTTCCTTGACAACAACCCGCCGCTTCCACGTCTGTTGTGCGGCCAAAACA
. : . : . : . : . : . :
rJMSF040G13+ GAGACAGTGCAGAAAGTGTGTGACATTGTGAGGAAGCAACTAGCATTGCCTGCCGAGACT
JMSF040G13- GAGACAGTGCAGAAAGTGTGTGACATTGTGAGGAAGCAACTAGCATTGCCTGCCGAGACT
____________________________________________________________
consensus GAGACAGTGCAGAAAGTGTGTGACATTGTGAGGAAGCAACTAGCATTGCCTGCCGAGACT
. : . : . : . : . : . :
rJMSF040G13+ GATGTCACGCCTCAAACCAAGTTTGCAGAGCTCGGTGCCGATTCCTTAGACACAGTGGAG
JMSF040G13- GATGTCACGCCTCAAACCAAGTTTGCAGAGCTCGGTGCCGATTCCTTAGACACAGTGGAG
____________________________________________________________
consensus GATGTCACGCCTCAAACCAAGTTTGCAGAGCTCGGTGCCGATTCCTTAGACACAGTGGAG
. : . : . : . : . : . :
rJMSF040G13+ ATTGTGATGTGTATTGAGGAAGAGTTCGGGATAAGCGTGGAAGAACAGAACGCGGAGAGC
JMSF040G13- ATTGTGATGTGTATTGAGGAAGAGTTCGGGATAAGCGTGGAAGAACAGAACGCGGAGAGC
____________________________________________________________
consensus ATTGTGATGTGTATTGAGGAAGAGTTCGGGATAAGCGTGGAAGAACAGAACGCGGAGAGC
. : . : . : . : . : . :
rJMSF040G13+ ATAACCTCTGTCCAGGAAGCTGCAGAGCTGATAGACAAACTTGTGAACAAACCGGAAGCT
JMSF040G13- ATAACCTCTGTCCAGGAAGCTGCAGAGCTGATAGACAAACTTGTGAACAAACCGGAAGCT
____________________________________________________________
consensus ATAACCTCTGTCCAGGAAGCTGCAGAGCTGATAGACAAACTTGTGAACAAACCGGAAGCT
. : . : . : . : . : . :
rJMSF040G13+ TAGAAATTAAGATAAGATGCCATAAGTTATGTGTTTGGGTTTAATTTAGTAATGTGAGGT
JMSF040G13- TAGAAATTAAGATAAGATGCCATAAGTTATGTGTTTGGGTTTAATTTAGTAATGTGAGGT
____________________________________________________________
consensus TAGAAATTAAGATAAGATGCCATAAGTTATGTGTTTGGGTTTAATTTAGTAATGTGAGGT
. : . : . : . : . : . :
rJMSF040G13+ AGGATCATTTGTTTGGTTGTGTCTCCATGAATTGTGTAATGCGGATTTTGAGTTTTTTGA
JMSF040G13- AGGATCATTTGTTTGGTTGTGTCTCCATGAATTGTGTAATGCGGATTTTGAGTTTTTTGA
____________________________________________________________
consensus AGGATCATTTGTTTGGTTGTGTCTCCATGAATTGTGTAATGCGGATTTTGAGTTTTTTGA
. : . : . : . : . : . :
rJMSF040G13+ AAAATT
JMSF040G13- AAAATTGAATTCATTTCATGATTGATGATATCTGTCTAGAGTTATTCTTCAAAAAAAAAA
____________________________________________________________
consensus AAAATTGAATTCATTTCATGATTGATGATATCTGTCTAGAGTTATTCTTCAAAAAAAAAA