| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS008C06 | Sequence | 615 | 005233 (5) | ref|XP_011098635.1| | 1e-04 | PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic isoform | |||||
| JMSF001O17 | Sequence | 193 | 005233 (5) | 644 | 008558 (4) | gb|AAY89383.1| | 3e-103 | starch synthase isoform 2 [Nicotiana langsdorffii x Nicotiana sanderae] | |||
| JMSF024I14 | Sequence | 629 | 005233 (5) | ref|XP_011098635.1| | 2e-13 | PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic isoform | 768 | 008558 (4) | gb|AAY89383.1| | 2e-134 | starch synthase isoform 2 [Nicotiana langsdorffii x Nicotiana sanderae] |
| JMSF028N18 | Sequence | 650 | 005233 (5) | ref|NP_001274977.1| | 9e-09 | granule-bound starch synthase 2, chloroplastic/amyloplastic precursor [Solanum | 716 | 008558 (4) | gb|AAY89383.1| | 7e-107 | starch synthase isoform 2 [Nicotiana langsdorffii x Nicotiana sanderae] |
| JMSF039M13 | Sequence | 649 | 005233 (5) | ref|XP_011098635.1| | 4e-05 | PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic isoform | 872 | 008558 (4) | ref|XP_002531856.1| | 2e-137 | starch synthase, putative [Ricinus communis] gb|EEF30534.1| starch synthase, put |
This contig is upended
. : . : . : . : . : . :
JMSF024I14+ CTGGGTCTACAATGCTACTTCTTATTTTAGACACTAATTCCTTTCTTT
JMSF028N18+ TTTCTTT
____________________________________________________________
consensus CTGGGTCTACAATGCTACTTCTTATTTTAGACACTAATTCCTTTCTTT
. : . : . : . : . : . :
JMSF024I14+ CAGCAATCTGTCGGAGTAGGTCATTTTGCATGGCCAGTACCTTCTGGCTCTTTTTAATCG
JMFS008C06+ GTAGGTCATTTTGCATGGCCAGTACCTTCTGGCTCTTTTTAATCG
JMSF028N18+ CAGCAATCTGTCGGAGTAGGTCATTTTGCATGGCCAGTACCTTCTGGCTCTTTTTAATCG
JMSF039M13+ GTAGGTCATTTTGCATGGCCAGTACCTTCTGGCTCTTTTTAATCG
____________________________________________________________
consensus CAGCAATCTGTCGGAGTAGGTCATTTTGCATGGCCAGTACCTTCTGGCTCTTTTTAATCG
. : . : . : . : . : . :
JMSF024I14+ TAGCCTGCAGAGCATCCTCTTCTTCTTCTTCTTCTTCTTCATTCCCGGCATCTCCCCCGG
JMFS008C06+ TAGCCTGCAGAGCATCCTCTTCTTCTTCTTCTTCTTCTTCATTCCCGGCATCTCCCCCGG
JMSF028N18+ TAGCCTGCAGAGCATCCTCTTCTTCTTCTTCTTCTTCTTCATTCCCGGCATCTCCCCCGG
JMSF039M13+ TAGCCTGCAGAGCATCCTCTTCTTCTTCTTCTTCTTCTTCATTCCCGGCATCTCCCCCGG
____________________________________________________________
consensus TAGCCTGCAGAGCATCCTCTTCTTCTTCTTCTTCTTCTTCATTCCCGGCATCTCCCCCGG
. : . : . : . : . : . :
JMSF024I14+ CGGAGCTTTTACCCGTAGCTTTCACACGTTCGATCCTGCAAATATGGTGTCTACTACGGC
JMFS008C06+ CGGAGCTTTTACCCGTAGCTTTCACACGTTCGATCCTGCAAATATGGTGTCTACTACGGC
JMSF028N18+ CGGAGCTTTTACCCGTAGCTTTCACACGTTCGATCCTGCAAATATGGTGTCTACTACGGC
JMSF039M13+ CGGAGCTTTTACCCGTAGCTTTCACACGTTCGATCCTGCAAATATGGTGTCTACTACGGC
____________________________________________________________
consensus CGGAGCTTTTACCCGTAGCTTTCACACGTTCGATCCTGCAAATATGGTGTCTACTACGGC
. : . : . : . : . : . :
JMSF024I14+ CATGGCGCAGAGACAGCCTCCCGATATCATCACTCAAAATCCTACGAAACCCAATCAGAG
JMFS008C06+ CATGGCGCAGAGACAGCCTCCCGATATCATCACTCAAAATCCTACGAAACCCAATCAGAG
JMSF028N18+ CATGGCGCAGAGACAGCCTCCCGATATCATCACTCAAAATCCTACGAAACCCAATCAGAG
JMSF039M13+ CATGGCGCAGAGACAGCCTCCCGATATCATCACTCAAAATCCTACGAAACCCAATCAGAG
____________________________________________________________
consensus CATGGCGCAGAGACAGCCTCCCGATATCATCACTCAAAATCCTACGAAACCCAATCAGAG
. : . : . : . : . : . :
JMSF024I14+ AATCAGCCGAACCTCCAGACTGGACAGATTTTCTAGGCCGACATGCGAGGAGGGGAACCG
JMFS008C06+ AATCAGCCGAACCTCCAGACTGGACAGATTTTCTAGGCCGACATGCGAGGAGGGGAACCG
JMSF028N18+ AATCAGCCGAACCTCCAGACTGGACAGATTTTCTAGGCCGACATGCGAGGAGGGGAACCG
JMSF039M13+ AATCAGCCGAACCTCCAGACTGGACAGATTTTCTAGGCCGACATGCGAGGAGGGGAACCG
____________________________________________________________
consensus AATCAGCCGAACCTCCAGACTGGACAGATTTTCTAGGCCGACATGCGAGGAGGGGAACCG
. : . : . : . : . : . :
JMSF024I14+ TGGGCCGACAAATTGAGCTCTCCATCACCTCTAAGTCCAATCAAAAACAGGAAAAAAGAT
JMFS008C06+ TGGGCCGACAAATTGAGCTCTCCATCACCTCTAAGTCCAATCAAAAACAGGAAAAAAGAT
JMSF028N18+ TGGGCCGACAAATTGAGCTCTCCATCACCTCTAAGTCCAATCAAAAACAGGAAAAAAGAT
JMSF039M13+ TGGGCCGACAAATTGAGCTCTCCATCACCTCTAAGTCCAATCAAAAACAGGAAAAAAGAT
____________________________________________________________
consensus TGGGCCGACAAATTGAGCTCTCCATCACCTCTAAGTCCAATCAAAAACAGGAAAAAAGAT
. : . : . : . : . : . :
JMSF024I14+ CCTAAAACAGAAGGAGCACAAGGTGTTCGACGTTATTCCTAAAAAGGAGCAACAAGATTA
JMSF001O17+ TCGACGTTATTCCTAAAAAGGAGCAACGAGATTA
JMFS008C06+ CCTAAAACAGAAGGAGCACAAGGTGTTCGACGTTATTCCTAAAAAGGAGCAACGAGATTA
JMSF028N18+ CCTAAAACAGAAGGAGCACAAGGTGTTCGACGTTATTCCTAAAAAGGAGCAACGAGATTA
JMSF039M13+ CCTAAAACAGAAGGAGCACAAGGTGTTCGACGTTATTCCTAAAAAGGAGCAACGAGATTA
____________________________________________________________
consensus CCTAAAACAGAAGGAGCACAAGGTGTTCGACGTTATTCCTAAAAAGGAGCAACGAGATTA
. : . : . : . : . : . :
JMSF024I14+ ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
JMSF001O17+ ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
JMFS008C06+ ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
JMSF028N18+ ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
JMSF039M13+ ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
____________________________________________________________
consensus ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
. : . : . : . : . : . :
JMSF024I14+ GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
JMSF001O17+ GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
JMFS008C06+ GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
JMSF028N18+ GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
JMSF039M13+ GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
____________________________________________________________
consensus GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
. : . : . : . : . : . :
JMSF024I14+ GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGTTCAC
JMSF001O17+ GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGT
JMFS008C06+ GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGTTCACGGTGGCTCTAATGCCGCTAG
JMSF028N18+ GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGTTCACGGTGGCTCTAATGCCGCTAG
JMSF039M13+ GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGTTCACGGTGGCTCTAATGCCGCTAG
____________________________________________________________
consensus GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGTTCACGGTGGCTCTAATGCCGCTAG
. : . : . : . : . : . :
JMFS008C06+ CTCACATTAACAGACAAGGAATCGGAGATC
JMSF028N18+ CTCACATTAACAGACAAGGAATCGGAGATCCTTTTCCGGTAC
JMSF039M13+ CTCACATTAACAGACAAGGAATCGGAGATCCTTTTCCGGTACGCGCATCACGGTCCACCA
____________________________________________________________
consensus CTCACATTAACAGACAAGGAATCGGAGATCCTTTTCCGGTACGCGCATCACGGTCCACCA