Contig 005233:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS008C06Sequence615005233 (5)ref|XP_011098635.1|1e-04PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic isoform
JMSF001O17Sequence193005233 (5)644008558 (4)gb|AAY89383.1|3e-103starch synthase isoform 2 [Nicotiana langsdorffii x Nicotiana sanderae]
JMSF024I14Sequence629005233 (5)ref|XP_011098635.1|2e-13PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic isoform 768008558 (4)gb|AAY89383.1|2e-134starch synthase isoform 2 [Nicotiana langsdorffii x Nicotiana sanderae]
JMSF028N18Sequence650005233 (5)ref|NP_001274977.1|9e-09granule-bound starch synthase 2, chloroplastic/amyloplastic precursor [Solanum 716008558 (4)gb|AAY89383.1|7e-107starch synthase isoform 2 [Nicotiana langsdorffii x Nicotiana sanderae]
JMSF039M13Sequence649005233 (5)ref|XP_011098635.1|4e-05PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic isoform 872008558 (4)ref|XP_002531856.1|2e-137starch synthase, putative [Ricinus communis] gb|EEF30534.1| starch synthase, put

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF024I14+ CTGGGTCTACAATGCTACTTCTTATTTTAGACACTAATTCCTTTCTTT
JMSF028N18+ TTTCTTT
                      ____________________________________________________________
consensus CTGGGTCTACAATGCTACTTCTTATTTTAGACACTAATTCCTTTCTTT
 
. : . : . : . : . : . :
JMSF024I14+ CAGCAATCTGTCGGAGTAGGTCATTTTGCATGGCCAGTACCTTCTGGCTCTTTTTAATCG
JMFS008C06+ GTAGGTCATTTTGCATGGCCAGTACCTTCTGGCTCTTTTTAATCG
JMSF028N18+ CAGCAATCTGTCGGAGTAGGTCATTTTGCATGGCCAGTACCTTCTGGCTCTTTTTAATCG
JMSF039M13+ GTAGGTCATTTTGCATGGCCAGTACCTTCTGGCTCTTTTTAATCG
                      ____________________________________________________________
consensus CAGCAATCTGTCGGAGTAGGTCATTTTGCATGGCCAGTACCTTCTGGCTCTTTTTAATCG
 
. : . : . : . : . : . :
JMSF024I14+ TAGCCTGCAGAGCATCCTCTTCTTCTTCTTCTTCTTCTTCATTCCCGGCATCTCCCCCGG
JMFS008C06+ TAGCCTGCAGAGCATCCTCTTCTTCTTCTTCTTCTTCTTCATTCCCGGCATCTCCCCCGG
JMSF028N18+ TAGCCTGCAGAGCATCCTCTTCTTCTTCTTCTTCTTCTTCATTCCCGGCATCTCCCCCGG
JMSF039M13+ TAGCCTGCAGAGCATCCTCTTCTTCTTCTTCTTCTTCTTCATTCCCGGCATCTCCCCCGG
                      ____________________________________________________________
consensus TAGCCTGCAGAGCATCCTCTTCTTCTTCTTCTTCTTCTTCATTCCCGGCATCTCCCCCGG
 
. : . : . : . : . : . :
JMSF024I14+ CGGAGCTTTTACCCGTAGCTTTCACACGTTCGATCCTGCAAATATGGTGTCTACTACGGC
JMFS008C06+ CGGAGCTTTTACCCGTAGCTTTCACACGTTCGATCCTGCAAATATGGTGTCTACTACGGC
JMSF028N18+ CGGAGCTTTTACCCGTAGCTTTCACACGTTCGATCCTGCAAATATGGTGTCTACTACGGC
JMSF039M13+ CGGAGCTTTTACCCGTAGCTTTCACACGTTCGATCCTGCAAATATGGTGTCTACTACGGC
                      ____________________________________________________________
consensus CGGAGCTTTTACCCGTAGCTTTCACACGTTCGATCCTGCAAATATGGTGTCTACTACGGC
 
. : . : . : . : . : . :
JMSF024I14+ CATGGCGCAGAGACAGCCTCCCGATATCATCACTCAAAATCCTACGAAACCCAATCAGAG
JMFS008C06+ CATGGCGCAGAGACAGCCTCCCGATATCATCACTCAAAATCCTACGAAACCCAATCAGAG
JMSF028N18+ CATGGCGCAGAGACAGCCTCCCGATATCATCACTCAAAATCCTACGAAACCCAATCAGAG
JMSF039M13+ CATGGCGCAGAGACAGCCTCCCGATATCATCACTCAAAATCCTACGAAACCCAATCAGAG
                      ____________________________________________________________
consensus CATGGCGCAGAGACAGCCTCCCGATATCATCACTCAAAATCCTACGAAACCCAATCAGAG
 
. : . : . : . : . : . :
JMSF024I14+ AATCAGCCGAACCTCCAGACTGGACAGATTTTCTAGGCCGACATGCGAGGAGGGGAACCG
JMFS008C06+ AATCAGCCGAACCTCCAGACTGGACAGATTTTCTAGGCCGACATGCGAGGAGGGGAACCG
JMSF028N18+ AATCAGCCGAACCTCCAGACTGGACAGATTTTCTAGGCCGACATGCGAGGAGGGGAACCG
JMSF039M13+ AATCAGCCGAACCTCCAGACTGGACAGATTTTCTAGGCCGACATGCGAGGAGGGGAACCG
                      ____________________________________________________________
consensus AATCAGCCGAACCTCCAGACTGGACAGATTTTCTAGGCCGACATGCGAGGAGGGGAACCG
 
. : . : . : . : . : . :
JMSF024I14+ TGGGCCGACAAATTGAGCTCTCCATCACCTCTAAGTCCAATCAAAAACAGGAAAAAAGAT
JMFS008C06+ TGGGCCGACAAATTGAGCTCTCCATCACCTCTAAGTCCAATCAAAAACAGGAAAAAAGAT
JMSF028N18+ TGGGCCGACAAATTGAGCTCTCCATCACCTCTAAGTCCAATCAAAAACAGGAAAAAAGAT
JMSF039M13+ TGGGCCGACAAATTGAGCTCTCCATCACCTCTAAGTCCAATCAAAAACAGGAAAAAAGAT
                      ____________________________________________________________
consensus TGGGCCGACAAATTGAGCTCTCCATCACCTCTAAGTCCAATCAAAAACAGGAAAAAAGAT
 
. : . : . : . : . : . :
JMSF024I14+ CCTAAAACAGAAGGAGCACAAGGTGTTCGACGTTATTCCTAAAAAGGAGCAACAAGATTA
JMSF001O17+ TCGACGTTATTCCTAAAAAGGAGCAACGAGATTA
JMFS008C06+ CCTAAAACAGAAGGAGCACAAGGTGTTCGACGTTATTCCTAAAAAGGAGCAACGAGATTA
JMSF028N18+ CCTAAAACAGAAGGAGCACAAGGTGTTCGACGTTATTCCTAAAAAGGAGCAACGAGATTA
JMSF039M13+ CCTAAAACAGAAGGAGCACAAGGTGTTCGACGTTATTCCTAAAAAGGAGCAACGAGATTA
                      ____________________________________________________________
consensus CCTAAAACAGAAGGAGCACAAGGTGTTCGACGTTATTCCTAAAAAGGAGCAACGAGATTA
 
. : . : . : . : . : . :
JMSF024I14+ ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
JMSF001O17+ ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
JMFS008C06+ ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
JMSF028N18+ ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
JMSF039M13+ ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
                      ____________________________________________________________
consensus ATAAAATCACGTGGAAGAAAATCGGTGGCTGAAGAAACGCGATCGAGGTGAAACGATATT
 
. : . : . : . : . : . :
JMSF024I14+ GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
JMSF001O17+ GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
JMFS008C06+ GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
JMSF028N18+ GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
JMSF039M13+ GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
                      ____________________________________________________________
consensus GTGCCAACAGACGTCGCTGTCGGAATTGTTCGGAGAGTGTAATGGGACCCGGTGACAGAA
 
. : . : . : . : . : . :
JMSF024I14+ GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGTTCAC
JMSF001O17+ GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGT
JMFS008C06+ GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGTTCACGGTGGCTCTAATGCCGCTAG
JMSF028N18+ GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGTTCACGGTGGCTCTAATGCCGCTAG
JMSF039M13+ GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGTTCACGGTGGCTCTAATGCCGCTAG
                      ____________________________________________________________
consensus GGAATCATGTACGACGGGCCATGGCGGTTTTGTAGTTCACGGTGGCTCTAATGCCGCTAG
 
. : . : . : . : . : . :
JMFS008C06+ CTCACATTAACAGACAAGGAATCGGAGATC
JMSF028N18+ CTCACATTAACAGACAAGGAATCGGAGATCCTTTTCCGGTAC
JMSF039M13+ CTCACATTAACAGACAAGGAATCGGAGATCCTTTTCCGGTACGCGCATCACGGTCCACCA
                      ____________________________________________________________
consensus CTCACATTAACAGACAAGGAATCGGAGATCCTTTTCCGGTACGCGCATCACGGTCCACCA