Contig 005228:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003E15Sequence248005228 (3)588012623 (3)ref|XP_006340434.1|2e-22PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase-like [Solanum tuber
JMSF024B01Sequence640005228 (3)ref|XP_009615453.1|2e-75PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-li304012623 (3)
JMSF038O05Sequence652005228 (3)ref|XP_009615453.1|4e-59PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-li238012623 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF024B01+ TTAAAACCC
                      ____________________________________________________________
consensus TTAAAACCC
 
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JMSF024B01+ TTACCGCTGCATCAACAGCCTGTGTGGTACTGGACTCATAGCTACCAAAAGGGAGGTCAC
                      ____________________________________________________________
consensus TTACCGCTGCATCAACAGCCTGTGTGGTACTGGACTCATAGCTACCAAAAGGGAGGTCAC
 
. : . : . : . : . : . :
JMSF024B01+ AAACAAGAAAAGGGCATTTAGCTCCTCTGGCAACAGCTCGACAATGCACGAGCATCTCAT
JMSF038O05+ AAAGGGCATTTAGCTCCTCTGGCAACAGCTCGACAATGCACGAGCATCTCAT
                      ____________________________________________________________
consensus AAACAAGAAAAGGGCATTTAGCTCCTCTGGCAACAGCTCGACAATGCACGAGCATCTCAT
 
. : . : . : . : . : . :
JMSF024B01+ CAAGAGTGATGGGCAGAGTGGTGTCATGGCCATGAACCACCATAGCGGCAGAGTCACCTA
JMSF038O05+ CAAGAGTGATGGGCAGAGTGGTGTCATGGCCATGAACCACCATAGCGGCAGAGTCACCTA
                      ____________________________________________________________
consensus CAAGAGTGATGGGCAGAGTGGTGTCATGGCCATGAACCACCATAGCGGCAGAGTCACCTA
 
. : . : . : . : . : . :
JMSF024B01+ CTAGACATATATCAATCCCAGCAGTGTCAAGATGCACAGAAGAAGGATAATCATAGGCTG
JMSF038O05+ CTAGACATATATCAATCCCAGCAGTGTCAAGATGCACAGAAGAAGGATAATCATAGGCTG
                      ____________________________________________________________
consensus CTAGACATATATCAATCCCAGCAGTGTCAAGATGCACAGAAGAAGGATAATCATAGGCTG
 
. : . : . : . : . : . :
JMSF024B01+ TGACCATGGTTATGGGCTCCCCCTTGCGGTGCTTCTGGCGGAGAGTAGCGAGGGTTGTTC
JMSF038O05+ TGACCATGGTTATGGGCTCCCCCTTGCGGTGCTTCTGGCGGAGAGTAGCGAGGGTTGTTC
                      ____________________________________________________________
consensus TGACCATGGTTATGGGCTCCCCCTTGCGGTGCTTCTGGCGGAGAGTAGCGAGGGTTGTTC
 
. : . : . : . : . : . :
JMSF024B01+ TCTGGTTCGGGTCCTGTGGCTTGGGACCACCATATACTGCATTCTCTGGCAGGTTGCTCA
JMSF038O05+ TCTGGTTCGGGTCCTGTGGCTTGGGACCACCATATACTGCATTCTCTGGCAGGTTGCTCA
                      ____________________________________________________________
consensus TCTGGTTCGGGTCCTGTGGCTTGGGACCACCATATACTGCATTCTCTGGCAGGTTGCTCA
 
. : . : . : . : . : . :
JMSF024B01+ TGCATCTTACACCAGTTCTCACGTGACTGATCAGAGATTTTCTTACAAGGCTTCTTGTTA
JMSF038O05+ TGCATCTTACACCAGTTCTCACGTGACTGATCAGAGATTTTCTTACAAGGCTTCTTGTTA
                      ____________________________________________________________
consensus TGCATCTTACACCAGTTCTCACGTGACTGATCAGAGATTTTCTTACAAGGCTTCTTGTTA
 
. : . : . : . : . : . :
JMSF024B01+ TTGAATTGAAAAATGCCATCCGAAAAGGTAT
JMSF038O05+ TTGAATTGAAAAATGCCATCCGAAAAGGTATCTGTTAGAATTTGATAAGTGATAACAATA
                      ____________________________________________________________
consensus TTGAATTGAAAAATGCCATCCGAAAAGGTATCTGTTAGAATTTGATAAGTGATAACAATA
 
. : . : . : . : . : . :
JMSF038O05+ TCTTATGAGGACATAAAGTGCAAGTTATGCAATGAAGTTGTTTATTCGAATTTTCCTCAC
                      ____________________________________________________________
consensus TCTTATGAGGACATAAAGTGCAAGTTATGCAATGAAGTTGTTTATTCGAATTTTCCTCAC
 
. : . : . : . : . : . :
JMSF003E15+ TCCCAATTAGTCCAAGGATCTACAATCTGTGCCTCTGTGGATATTGAGTCATTGGACTGT
JMSF038O05+ TCCCAATTAGTCCAAGGATCTACAATCTGTGCCTCTGTGGATATTGAGTCATTGGACTGT
                      ____________________________________________________________
consensus TCCCAATTAGTCCAAGGATCTACAATCTGTGCCTCTGTGGATATTGAGTCATTGGACTGT
 
. : . : . : . : . : . :
JMSF003E15+ ATATCCTTGAAGAATGAAGAATGAAGAGTGATTGAAGTTGGAAGTTGTGAGCGACCAGTT
JMSF038O05+ ATATCCTTGAAGAATGAAGAATGAAGAGTGATTGAAGTTGGAAGTTGTGAGCGCCCAGTT
                      ____________________________________________________________
consensus ATATCCTTGAAGAATGAAGAATGAAGAGTGATTGAAGTTGGAAGTTGTGAGCGCCCAGTT
 
. : . : . : . : . : . :
JMSF003E15+ CCGTCTCCAACTCAC
JMSF038O05+ CCGTCTCCAACTCACTGTCTCTTCAGACTCCGGTCTCCAACCAACAGCCAACAACAATTC
                      ____________________________________________________________
consensus CCGTCTCCAACTCACTGTCTCTTCAGACTCCGGTCTCCAACCAACAGCCAACAACAATTC