| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005E01 | Sequence | 478 | 005226 (6) | ref|XP_007044913.1| | 231 | TCP-1/cpn60 chaperonin family protein isoform 2 [Theobroma cacao] gb|EOY00745.1| | 598 | 010103 (9) | ref|XP_004239159.1| | 6e-107 | PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum] |
| JMFF040F17 | Sequence | 563 | 005226 (6) | ref|XP_004239159.1| | 4e-95 | PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum] | 746 | 010103 (9) | ref|XP_004239159.1| | 9e-122 | PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum] |
| JMSF038J20 | Sequence | 685 | 005226 (6) | ref|XP_010248739.1| | 4e-124 | PREDICTED: T-complex protein 1 subunit epsilon [Nelumbo nucifera] | 840 | 010103 (9) | ref|XP_004239159.1| | 2e-151 | PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum] |
| JMSF039J20 | Sequence | 687 | 005226 (6) | ref|XP_010248739.1| | 2e-123 | PREDICTED: T-complex protein 1 subunit epsilon [Nelumbo nucifera] | 666 | 010103 (9) | ref|XP_004239159.1| | 2e-110 | PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum] |
| JMSF048K12 | Sequence | 695 | 005226 (6) | ref|XP_010248739.1| | 5e-124 | PREDICTED: T-complex protein 1 subunit epsilon [Nelumbo nucifera] | 760 | 010103 (9) | ref|XP_004239159.1| | 3e-122 | PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum] |
| JMSF049O05 | Sequence | 663 | 005226 (6) | ref|XP_004239159.1| | 3e-108 | PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum] | 729 | 010103 (9) | ref|XP_004239159.1| | 1e-114 | PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
JMSF039J20+ TCTGCAACAGCGAGAANTGCTTTGACA
JMSF048K12+ TGCAACAGCGAGAACTGCTTTGACA
JMSF038J20+ TGCAACAGCGAGAACTGCTTTGACA
____________________________________________________________
consensus TCTGCAACAGCGAGAACTGCTTTGACA
. : . : . : . : . : . :
JMSF039J20+ GCAATCTCAGCTAAGTTACGCTTGCATCTATTCACAATCTTAGATGACAAGGTAGTCATG
JMSF048K12+ GCAATCTCAGCTAAGTTACGCTTGCATCTATTCACAATCTTAGATGACAAGGTAGTCATG
JMSF049O05+ GATGACAAGGTAGTCATG
JMSF038J20+ GCAATCTCAGCTAAGTTACGCTTGCATCTATTCACAATCTTAGATGACAAGGTAGTCATG
____________________________________________________________
consensus GCAATCTCAGCTAAGTTACGCTTGCATCTATTCACAATCTTAGATGACAAGGTAGTCATG
. : . : . : . : . : . :
JMSF039J20+ CAAGTTTGAACCAAAGGCTCAATGTCATTCACACCAAATTCAAATTTATGTGCAATGCGC
JMFF040F17+ AATTCAAATTTATGTGCAATGCGC
JMSF048K12+ CAAGTTTGAACCAAAGGCTCAATGTCATTCACACCAAATTCAAATTTATGTGCAATGCGC
JMSF049O05+ CAAGTTTGAACCAAAGGCTCAATGTCATTCACACCAAATTCAAATTTATGTGCAATGCGC
JMSF038J20+ CAAGTTTGAACCAAAGGCTCAATGTCATTCACACCAAATTCAAATTTATGTGCAATGCGC
____________________________________________________________
consensus CAAGTTTGAACCAAAGGCTCAATGTCATTCACACCAAATTCAAATTTATGTGCAATGCGC
. : . : . : . : . : . :
JMSF039J20+ TCCAGATGTCCAACTGCAATCCTGGATGCCATTTCATATCCCTCAGCAATTCGAATTGGA
JMFF040F17+ TCCAGATGTCCAACTGCAATCCTGGATGCCATTTCATATCCCTCAGCAATTCGAATTGGA
JMSF048K12+ TCCAGATGTCCAACTGCAATCCTGGATGCCATTTCATATCCCTCAGCAATTCGAATTGGA
JMSF049O05+ TCCAGATGTCCAACTGCAATCCTGGATGCCATTTCATATCCCTCAGCAATTCGAATTGGA
JMSF038J20+ TCCAGATGTCCAACTGCAATCCTGGATGCCATTTCATATCCCTCAGCAATTCGAATTGGA
____________________________________________________________
consensus TCCAGATGTCCAACTGCAATCCTGGATGCCATTTCATATCCCTCAGCAATTCGAATTGGA
. : . : . : . : . : . :
JMSF039J20+ TGAATACCACGTTCTAACAACTTTTCAGCTTGTTCAAGAAGTGCTCCAGCCAGGACAACA
JMFF005E01+ TTTTCAGCTTGTTCAAGAAGTGCTCCAGCCAGGACAACA
JMFF040F17+ TGAATACCACGTTCTAACAACTTTTCAGCTTGTTCAAGAAGTGCTCCAGCCAGGACAACA
JMSF048K12+ TGAATACCACGTTCTAACAACTTTTCAGCTTGTTCAAGAAGTGCTCCAGCCAGGACAACA
JMSF049O05+ TGAATACCACGTTCTAACAACTTTTCAGCTTGTTCAAGAAGTGCTCCAGCCAGGACAACA
JMSF038J20+ TGAATACCACGTTCTAACAACTTTTCAGCTTGTTCAAGAAGTGCTCCAGCCAGGACAACA
____________________________________________________________
consensus TGAATACCACGTTCTAACAACTTTTCAGCTTGTTCAAGAAGTGCTCCAGCCAGGACAACA
. : . : . : . : . : . :
JMSF039J20+ ACTCCAGTTGTTCCATCACCAATCTCATAATCCTGACTTCGGGACAATTCTACCATAAGC
JMFF005E01+ ACTCCAGTTGTTCCATCACCAATCTCATAATCCTGACTTCGGGACAATTCTACCATAAGC
JMFF040F17+ ACTCCAGTTGTTCCATCACCAATCTCATAATCCTGACTTCGGGACAATTCTACCATAAGC
JMSF048K12+ ACTCCAGTTGTTCCATCACCAATCTCATAATCCTGACTTCGGGACAATTCTACCATAAGC
JMSF049O05+ ACTCCAGTTGTTCCATCACCAATCTCATAATCCTGACTTCGGGACAATTCTACCATAAGC
JMSF038J20+ ACTCCAGTTGTTCCATCACCAATCTCATAATCCTGACTTCGGGACAATTCTACCATAAGC
____________________________________________________________
consensus ACTCCAGTTGTTCCATCACCAATCTCATAATCCTGACTTCGGGACAATTCTACCATAAGC
. : . : . : . : . : . :
JMSF039J20+ TTTGCAATTTGATTGTCAACATCCATCTGCTCCAAGATGGTTGCACCATCATTTGTGATG
JMFF005E01+ TTTGCAATTTGATTGTCAACATCCATCTGCTCCAAGATGGTTGCACCATCATTTGTGATG
JMFF040F17+ TTTGCAATTTGATTGTCAACATCCATCTGCTCCAAGATGGTTGCACCATCATTTGTGATG
JMSF048K12+ TTTGCAATTTGATTGTCAACATCCATCTGCTCCAAGATGGTTGCACCATCATTTGTGATG
JMSF049O05+ TTTGCAATTTGATTGTCAACATCCATCTGCTCCAAGATGGTTGCACCATCATTTGTGATG
JMSF038J20+ TTTGCAATTTGATTGTCAACATCCATCTGCTCCAAGATGGTTGCACCATCATTTGTGATG
____________________________________________________________
consensus TTTGCAATTTGATTGTCAACATCCATCTGCTCCAAGATGGTTGCACCATCATTTGTGATG
. : . : . : . : . : . :
JMSF039J20+ GTGACGTCGCCATCAGGGCTCTGAAGCATCTTGTCCATGCCTTTGGGGCCGAGAGAGGTG
JMFF005E01+ GTGACGTCGCCATCAGGGCTCTGAAGCATCTTGTCCATGCCTTTGGGGCCGAGAGAGGTG
JMFF040F17+ GTGACGTCGCCATCAGGGCTCTGAAGCATCTTGTCCATGCCTTTGGGGCCGAGAGAGGTG
JMSF048K12+ GTGACGTCGCCATCAGGGCTCTGAAGCATCTTGTCCATGCCTTTGGGGCCGAGAGAGGTG
JMSF049O05+ GTGACGTCGCCATCAGGGCTCTGAAGCATCTTGTCCATGCCTTTGGGGCCGAGAGAGGTG
JMSF038J20+ GTGACGTCGCCATCAGGGCTCTGAAGCATCTTGTCCATGCCTTTGGGGCCGAGAGAGGTG
____________________________________________________________
consensus GTGACGTCGCCATCAGGGCTCTGAAGCATCTTGTCCATGCCTTTGGGGCCGAGAGAGGTG
. : . : . : . : . : . :
JMSF039J20+ CGGAGGATGCGAGCGACTGCCTTTCCGGCAGAAATGTTGGCCTTCTGAGCATCGAGGCCT
JMFF005E01+ CGGAGGATGCGAGCGACTGCCTTTCCGGCAGAAATGTTGGCCTTCTGAGCATCGAGGCC
JMFF040F17+ CGGAGGATGCGAGCGACTGCCTTTCCGGCAGAAATGTTGGCCTTCTGAGCATCGAGGCCT
JMSF048K12+ CGGAGGATGCGAGCGACTGCCTTTCCGGCAGAAATGTTGGCCTTCTGAGCATCGAGGCC
JMSF049O05+ CGGAGGATGCGAGCGACTGCCTTTCCGGCAGAAATGTTGGCCTTCTGAGCATCGAGGCC
JMSF038J20+ CGGAGGATGCGAGCGACTGCCTTTCCGGCAGAAATGTTGGCCTTCTGAGCATCGAGGCCT
____________________________________________________________
consensus CGGAGGATGCGAGCGACTGCCTTTCCGGCAGAAATGTTGGCCTTCTGAGCATCGAGGCCT
. : . : . : . : . : . :
JMSF039J20+ CTGAGCCTCATCTTCTGCTCCTGCTCCTTGATTATTATGAACGGCCTTCCGAACTCATCG
JMFF040F17+ CTGAGCCTCATCTTCTGCTCCTGCTCCTTGATTATTATGAACGGCCTTCCGAACTCATCG
JMSF038J20+ CTGAGCCTCATCTTCTGCTCCTGCTCCTTGATTATTATGAACGGCCTTCCGAACTCATCG
____________________________________________________________
consensus CTGAGCCTCATCTTCTGCTCCTGCTCCTTGATTATTATGAACGGCCTTCCGAACTCATCG
. : . : . : . : . : . :
JMSF039J20+ AAAGCCAAGGCCATTGCTACTCGCTCTCGATCTCGATCGGATTCACAACTTCTCTTCAGA
JMFF040F17+ AAAGCCAAGGCCATTGCTACTCGCTCTCGATCTCGATCGGATTCACAACTTCTCTTCAGA
JMSF038J20+ AAAGCCAAGGCCATTGCTACTCGCTCTCGATCTCGATCGGATTCACAACTTCTCTTCAGA
____________________________________________________________
consensus AAAGCCAAGGCCATTGCTACTCGCTCTCGATCTCGATCGGATTCACAACTTCTCTTCAGA
. : . : . : . : . : . :
JMSF039J20+ GACTCCGAAAGAGAAAAGAACGATATAGTGTGACGCTCAGTGTGGCGTAGAAAGTTCCT
JMFF040F17+ GACTCCGAAAGAGAAAAGAACGATATAGTGTGACGCTCAGTGTGGCGTAGAAAGTTCCT
JMSF038J20+ GACTCCGAAAGAGAAAAGAACGATATAGTGTGACGCTCAGTGTGGCGTAGAAAGTTCCTC
____________________________________________________________
consensus GACTCCGAAAGAGAAAAGAACGATATAGTGTGACGCTCAGTGTGGCGTAGAAAGTTCCTC