Contig 005225:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012L12Sequence330005225 (3)ref|XP_009793108.1|2e-19PREDICTED: transmembrane emp24 domain-containing protein p24beta2-like isoform 709005974 (17)ref|XP_009769194.1|7e-126PREDICTED: soluble inorganic pyrophosphatase 1, chloroplastic-like [Nicotiana s
JMSF038I11Sequence675005225 (3)ref|XP_009793108.1|5e-79PREDICTED: transmembrane emp24 domain-containing protein p24beta2-like isoform 907005225 (3)ref|XP_009793108.1|6e-113PREDICTED: transmembrane emp24 domain-containing protein p24beta2-like isoform

Alignment

This contig is upended


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rJMSF038I11-                                   TTAGTCTGCAACATGGGAAAATTTGTTAATAGGCA
                      ____________________________________________________________
consensus                                      TTAGTCTGCAACATGGGAAAATTTGTTAATAGGCA
 
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rJMSF038I11-          GAGCCACAAAAGGTTAAAGGTTCATAAGCCAGGAATAAGAAAATGCTATCATTTTTCGTT
                      ____________________________________________________________
consensus             GAGCCACAAAAGGTTAAAGGTTCATAAGCCAGGAATAAGAAAATGCTATCATTTTTCGTT
 
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rJMSF038I11-          CTTTTTGCCAAACGAATTTTCTTCATCCGCTTGGGCACCGATAACTTGAATGTCCGTGTC
                      ____________________________________________________________
consensus             CTTTTTGCCAAACGAATTTTCTTCATCCGCTTGGGCACCGATAACTTGAATGTCCGTGTC
 
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rJMSF038I11-          AAAAGATTAGACTCTCGACTGCCCAAGCTTCCGTTCAAACAACCGTTTTAGGAGAAAAAC
                      ____________________________________________________________
consensus             AAAAGATTAGACTCTCGACTGCCCAAGCTTCCGTTCAAACAACCGTTTTAGGAGAAAAAC
 
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rJMSF038I11-          TTGTAAAAAACTAGCGGCAATAAGAGCTGCAGACTCATACAAAGCTTTGTGAACTGCCCT
                      ____________________________________________________________
consensus             TTGTAAAAAACTAGCGGCAATAAGAGCTGCAGACTCATACAAAGCTTTGTGAACTGCCCT
 
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rJMSF038I11-          TTTGCTCATCCCTTCATTCACTATAGCTTGCCGGTCTGTCTGAGCCTCCAACCAATGCTG
JMSF038I11+                                                        CTCCAACCAATGCTG
                      ____________________________________________________________
consensus             TTTGCTCATCCCTTCATTCACTATAGCTTGCCGGTCTGTCTGAGCCTCCAACCAATGCTG
 
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rJMSF038I11-          CTCGAACTGAATGTTATATAAAGCTTCCTCTAGCTTGTTAATGTGTTCGAACAAAGGCCT
JMSF038I11+           CTCGAACTGAATGTTATATAAAGCTTCCTCTAGCTTGTTAATGTGTTCGAACAAAGGCCT
                      ____________________________________________________________
consensus             CTCGAACTGAATGTTATATAAAGCTTCCTCTAGCTTGTTAATGTGTTCGAACAAAGGCCT
 
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rJMSF038I11-          GAGATGTTCATCTTTTGCGTGTTCATCGTGGAACATATAGTGACCAGAATGTACATCAAA
JMSF038I11+           GAGATGTTCATCTTTTGCGTGTTCATCGTGGAACATATAGTGACCAGAATGTACATCAAA
                      ____________________________________________________________
consensus             GAGATGTTCATCTTTTGCGTGTTCATCGTGGAACATATAGTGACCAGAATGTACATCAAA
 
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rJMSF038I11-          GTCGATGGTCTCATGGTACGGGGACTTATTAGTGAAACAGAAACGGTGAACGCCTTCCTG
JMSF038I11+           GTCGATGGTCTCATGGTACGGGGACTTATTAGTGAAACAGAAACGGTGAACGCCTTCCTG
                      ____________________________________________________________
consensus             GTCGATGGTCTCATGGTACGGGGACTTATTAGTGAAACAGAAACGGTGAACGCCTTCCTG
 
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rJMSF038I11-          ATGAGCCACAAACTCGGACTTCTCGCTTATTTTTTCACGAAAATCCTGAATTTGTTCGCC
JMSF038I11+           ATGAGCCACAAACTCGGACTTCTCGCTTATTTTTTCACGAAAATCCTGAATTTGTTCGCC
                      ____________________________________________________________
consensus             ATGAGCCACAAACTCGGACTTCTCGCTTATTTTTTCACGAAAATCCTGAATTTGTTCGCC
 
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JMSF012L12+                        ACCACAAGATCAACGCCTTCTTCACCCAAATTCCAGGACTTCTCAGA
rJMSF038I11-          CACAGGTCCCTTCACCACAAGATCAACGCCTTCTTCACCCAAATTCCAGGACTGCTCAGA
JMSF038I11+           CACAGGTCCCTTCACCACAAGATCAACGCCTTCTTCACCCAAATTCCAGGACTGCTCAGA
                      ____________________________________________________________
consensus             CACAGGTCCCTTCACCACAAGATCAACGCCTTCTTCACCCAAATTCCAGGACTGCTCAGA
 
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JMSF012L12+           CTTAATCACAACAAATGAAAAATGAACAGTGTCCCCCAATGCCACCTTGTGGGCAAAGCA
rJMSF038I11-          CTTAATCACAACAAATGAAAAATGAACAGTGTCCCCCAATGCCACCTTGTGGGCAAAGCA
JMSF038I11+           CTTAATCACAACAAATGAAAAATGAACAGTGTCCCCCAATGCCACCTTGTGGGCAAAGCA
                      ____________________________________________________________
consensus             CTTAATCACAACAAATGAAAAATGAACAGTGTCCCCCAATGCCACCTTGTGGGCAAAGCA
 
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JMSF012L12+           TTCCTCTCTATCTATCACAAATCTGATTCCGTATGCCCCTCCGGCGCTCCAAATCAGCAC
rJMSF038I11-          TTCCTCTCTATCTATCACAAATCTGATTCCGTATGCCCCTCCGGCGCTCCAAATCAGCAC
JMSF038I11+           TTCCTCTCTATCTATCACAAATCTGATTCCGTATGCCCCTCCGGCGCTCCAAATCAGCAC
                      ____________________________________________________________
consensus             TTCCTCTCTATCTATCACAAATCTGATTCCGTATGCCCCTCCGGCGCTCCAAATCAGCAC
 
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JMSF012L12+           CACCGCCGCCGCCACGGCTGCCCAACCTCCCGACGGAAAAACTCGCACCATTTCTGGAAA
rJMSF038I11-          CACCGCCGCCGCCACGGCTGCCCAACCTCCCGACGGAAAAACTCGCACCATTTCTGGAAA
JMSF038I11+           CACCGCCGCCGCCACGGCTGCCCAACCTCCCGACGGAAAAACTCGCACCATTTCTGGAAA
                      ____________________________________________________________
consensus             CACCGCCGCCGCCACGGCTGCCCAACCTCCCGACGGAAAAACTCGCACCATTTCTGGAAA
 
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JMSF012L12+           AAAACGATGTGTTCCTCGAACGGCGAAAGAGGATTCGAAACCTTGAAACTGTTGATAGAT
rJMSF038I11-          AAAACGATGTGTTCCTCGAACGGCGAAAGAGGATTCGAAACCTTGAAACTGTTGATAGAT
JMSF038I11+           AAAACGATGTGTTCCTCGAACGGCGAAAGAGGATTCGAAACCTTGAAACTGTTGATAGAT
                      ____________________________________________________________
consensus             AAAACGATGTGTTCCTCGAACGGCGAAAGAGGATTCGAAACCTTGAAACTGTTGATAGAT
 
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JMSF012L12+           TTGACCAAGTT                                                 
rJMSF038I11-          TTGACCAAGTTAAGGTTGTGAACACCTCA                               
JMSF038I11+           TTGACCAAGTTAAGGTTGTGAACACCTCAATTGTCTTTACAATCCAAACCGTGAGTCCTA
                      ____________________________________________________________
consensus             TTGACCAAGTTAAGGTTGTGAACACCTCAATTGTCTTTACAATCCAAACCGTGAGTCCTA
 
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JMSF038I11+           GTCACTCGTACTTGCCCGTGAAACTCTGCTCCGACACAAATTATTGTTCTACACTATCTC
                      ____________________________________________________________
consensus             GTCACTCGTACTTGCCCGTGAAACTCTGCTCCGACACAAATTATTGTTCTACACTATCTC