Contig 005217:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028B20Sequence516005217 (5)emb|CDP17754.1|5e-28unnamed protein product [Coffea canephora]695004866 (6)gb|EYU35387.1|3e-04hypothetical protein MIMGU_mgv1a001660mg [Erythranthe guttata]
JMFF041O07Sequence651005217 (5)ref|XP_011087584.1|4e-127PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Sesamum indicu414004866 (6)gb|EYU35387.1|2e-06hypothetical protein MIMGU_mgv1a001660mg [Erythranthe guttata]
JMFS057A02Sequence614005217 (5)emb|CDP17754.1|3e-55unnamed protein product [Coffea canephora]
JMFS095C10Sequence607005217 (5)emb|CDP17754.1|3e-55unnamed protein product [Coffea canephora]
JMSF037L06Sequence655005217 (5)emb|CDP17754.1|2e-43unnamed protein product [Coffea canephora]711004866 (6)ref|XP_010546798.1|2e-11PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Tarenaya hassl

Alignment

This contig is upended


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JMFF041O07+                           TAGCATAAACCGCTATAAGATCACTGAGAATAGTCCGTTTTGAG
                      ____________________________________________________________
consensus                             TAGCATAAACCGCTATAAGATCACTGAGAATAGTCCGTTTTGAG
 
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JMFF041O07+           GTTGCTGTGGTCGGTATTGCATATAGCTTGATCCCCTCAGCCAGCTTTTCCTCTTCATCA
                      ____________________________________________________________
consensus             GTTGCTGTGGTCGGTATTGCATATAGCTTGATCCCCTCAGCCAGCTTTTCCTCTTCATCA
 
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JMFF041O07+           CCAACCAAGTCAATTGTCAGTGGATTGTTCAAATATTTCCTCGCTAGTTTCTTTACCCAG
                      ____________________________________________________________
consensus             CCAACCAAGTCAATTGTCAGTGGATTGTTCAAATATTTCCTCGCTAGTTTCTTTACCCAG
 
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JMFF041O07+           CTAGGCATGGTTGCAGAAAATAGCATGCTCTGCCGCTGTGATGGAAGCTTTTCCAAGATT
                      ____________________________________________________________
consensus             CTAGGCATGGTTGCAGAAAATAGCATGCTCTGCCGCTGTGATGGAAGCTTTTCCAAGATT
 
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JMFF041O07+           ACCTCCACATCCTCCTCAAACCCAACCGCAAGCATTTGATCAGCTTCATCAAGTACCAAA
                      ____________________________________________________________
consensus             ACCTCCACATCCTCCTCAAACCCAACCGCAAGCATTTGATCAGCTTCATCAAGTACCAAA
 
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JMFF041O07+           TACTGAACTTCCCCCAGCTTCAGGCTATTATTGTTGATCAGGTCAATGAGTCTACCTGGA
                      ____________________________________________________________
consensus             TACTGAACTTCCCCCAGCTTCAGGCTATTATTGTTGATCAGGTCAATGAGTCTACCTGGA
 
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JMFF041O07+           GTTCCAACAACCACGTCAACCCCACGGGAAAGTGCACTTTCCTGTGTAACATATGAGACT
                      ____________________________________________________________
consensus             GTTCCAACAACCACGTCAACCCCACGGGAAAGTGCACTTTCCTGTGTAACATATGAGACT
 
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JMFF041O07+           CCTCCACATATACAGGCAGTGTTTAAGTGCGGCGCTGATTCTTTTATTTCTTTCTCTACT
                      ____________________________________________________________
consensus             CCTCCACATATACAGGCAGTGTTTAAGTGCGGCGCTGATTCTTTTATTTCTTTCTCTACT
 
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JMFF041O07+           TGTTTGGCTAACTCTCTAGTAGGTGCAAGGACCAAAACTCGAGGCAGTCGTCCCCGCCTT
                      ____________________________________________________________
consensus             TGTTTGGCTAACTCTCTAGTAGGTGCAAGGACCAAAACTCGAGGCAGTCGTCCCCGCCTT
 
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JMFF041O07+           TGAGAAAATTTTGACTGTTCATCTTCAGTAATCCTTTTAATTATTGGGATACCAAATGCA
JMFS095C10+                        ACTGTTCATCTTCAGTAATCCTTTTAATTATTGGGATACCAAATGCA
JMFS057A02+                        ACTGTTCATCTTCAGTAATCCTTTTAATTATTGGGATACCAAATGCA
JMSF037L06+               AAAATTTTGACTGTTCATCTTCAGTAATCCTTTTAATTATTGGGATACCAAATGCA
                      ____________________________________________________________
consensus             TGAGAAAATTTTGACTGTTCATCTTCAGTAATCCTTTTAATTATTGGGATACCAAATGCA
 
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JMFF041O07+           AGTGTCTTCCCTGTCCCAGTTTTTGCTCTAGCAATTATATCGCGACCTTCCAATGCAGGT
JMFS095C10+           AGTGTCTTCCCTGTCCCAGTTTTTGCTCTAGCAATTATATCGCGACCTTCCAATGCAGGT
JMFS057A02+           AGTGTCTTCCCTGTCCCAGTTTTTGCTCTAGCAATTATATCGCGACCTTCCAATGCAGGT
JMSF037L06+           AGTGTCTTCCCTGTCCCAGTTTTTGCTCTAGCAATTATATCGCGACCTTCCAATGCAGGT
                      ____________________________________________________________
consensus             AGTGTCTTCCCTGTCCCAGTTTTTGCTCTAGCAATTATATCGCGACCTTCCAATGCAGGT
 
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JMFF041O07+           ATCAATA                                                     
JMFS095C10+           ATCAATACAGCTCTCTGAATTGGGAAAAGATTGGTAATCCCTCGTTTCTCAAGAGTCTCA
JMFS057A02+           ATCAATACAGCTCTCTGAATTGGGAAAAGATTGGTAATCCCTCGTTTCTCAAGAGTCTCA
JMFF028B20+                              TTGGGAAAAGATTGGTAATCCCTCGTTTCTCAAGAGTCTCA
JMSF037L06+           ATCAATACAGCTCTCTGAATTGGGAAAAGATTGGTAATCCCTCG-TTCTCAAGAGTCTCA
                      ____________________________________________________________
consensus             ATCAATACAGCTCTCTGAATTGGGAAAAGATTGGTAATCCCTCGTTTCTCAAGAGTCTCA
 
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JMFS095C10+           ACTAACTGCCGAGGCAAACCTAGTTTGGAAACTGCAAGTTCATCGTCACTATCAGCCGCT
JMFS057A02+           ACTAACTGCCGAGGCAAACCTAGTTTGGAAACTGCAAGTTCATCGTCACTATCAGCCGCT
JMFF028B20+           ACTAACTGCCGAGGCAAACCTAGTTTGGAAACTGCAAGTTCATCGTCACTATCAGCCGCT
JMSF037L06+           ACTAACTGCCGAGGCAAACCTAGTTTGGAAACTGCAAGTTCATCGTCACTATCAGCCGCT
                      ____________________________________________________________
consensus             ACTAACTGCCGAGGCAAACCTAGTTTGGAAACTGCAAGTTCATCGTCACTATCAGCCGCT
 
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JMFS095C10+           CCGAGCTCGCTCTCATCCTCATCGAGCTCCGAATCATACTCAGCGTCGCTGACATCCAAG
JMFS057A02+           CCGAGCTCGCTCTCATCCTCATCGAGCTCCGAATCATACTCAGCGTCGCTGACATCCAAG
JMFF028B20+           CCGAGCTCGCTCTCATCCTCATCGAGCTCCGAATCATACTCAGCGTCGCTGACATCCAAG
JMSF037L06+           CCGAGCTCGCTCTCATCCTCATCGAGCTCCGAATCATACTCAGCGTCGCTGACATCCAAG
                      ____________________________________________________________
consensus             CCGAGCTCGCTCTCATCCTCATCGAGCTCCGAATCATACTCAGCGTCGCTGACATCCAAG
 
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JMFS095C10+           GAATCCTTGGCGAACCCGCCGAGCCCCTTGAAGGCCTCCTCGCTGAGCAGAGAAGAATTG
JMFS057A02+           GAATCCTTGGCGAACCCGCCGAGCCCCTTGAAGGCCTCCTCGCTGAGCAGAGAAGAATTG
JMFF028B20+           GAATCCTTGGCGAACCCGCCGAGCCCCTTGAAGGCCTCCTCGCTGAGCAGAGAAGAATTG
JMSF037L06+           GAATCCTTGGCGAACCCGCCGAGCCCCTTGAAGGCCTCCTCGCTGAGCAGAGAAGAATTG
                      ____________________________________________________________
consensus             GAATCCTTGGCGAACCCGCCGAGCCCCTTGAAGGCCTCCTCGCTGAGCAGAGAAGAATTG
 
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JMFS095C10+           GGAGTGACCACAGCCGAAGCAACAAACGGGCTCGAACTCGAGCACTGCTTTGAACGAACA
JMFS057A02+           GGAGTGACCACAGCCGAAGCAACAAACGGGCTCGAACTCGAGCACTGCTTTGAACGAACA
JMFF028B20+           GGAGTGACCACAGCCGAAGCAACAAACGGGCTCGAACTCGAGCACTGCTTTGAACGAACA
JMSF037L06+           GGAGTGACCACAGCCGAAGCAACAAACGGGCTCGAACTCGAGCACTGCTTTGAACGAACA
                      ____________________________________________________________
consensus             GGAGTGACCACAGCCGAAGCAACAAACGGGCTCGAACTCGAGCACTGCTTTGAACGAACA
 
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JMFS095C10+           AGCGACGATGAAGAAAAAGCTTTTAGGGGATTGAAATGAAGCTTCTCAAAGGATTGAGGG
JMFS057A02+           AGCGACGATGAAGAAAAAGCTTTTAGGGGATTGAAATGAAGCTTCTCAAAGGATTGAGGG
JMFF028B20+           AGCGACGATGAAGAAAAAGCTTTTAGGGGATTGAAATGAAGCTTCTCAAAGGATTGAGGG
JMSF037L06+           AGCGACGATGAAGAAAAAGCTTTTAGGGGATTGAAATGAAGCTTCTCAAAGGATTGAGGG
                      ____________________________________________________________
consensus             AGCGACGATGAAGAAAAAGCTTTTAGGGGATTGAAATGAAGCTTCTCAAAGGATTGAGGG
 
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JMFS095C10+           AAAGATAGAGGAGGAGTAGAAGTAGGCCTCTTGGAATGTTCTAGAGACGGGTTAGCTTGG
JMFS057A02+           AAAGATAGAGGAGGAGTAGAAGTAGGCCTCTTGGAATGTTCTAGAGACGGGTTAGCTTGG
JMFF028B20+           AAAGATAGAGGAGGAGTAGAAGTAGGCCTCTTGGAATGTTCTAGAGACGGGTTAGCTTGG
JMSF037L06+           AAAGATAGAGGAGGAGTAGAAGTAGGCCTCTTGGAATGTTCTAGAGACGGGTTAGCTTGG
                      ____________________________________________________________
consensus             AAAGATAGAGGAGGAGTAGAAGTAGGCCTCTTGGAATGTTCTAGAGACGGGTTAGCTTGG
 
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JMFS095C10+           AATATGGAGGAAACACCGATAATGGAGGAAGTATATGCCATGGCCTCAGAGAAGAAGAAG
JMFS057A02+           AATATGGAGGAAACACCGATAATGGAGGAAGTATATGCCATGGCCTCAGAGAAGAAGAAG
JMFF028B20+           AATATGGAGGAAACACCGATAATGGAGGAAGTATATGCCATGGCCTCAGAGAAGAAGAAG
JMSF037L06+           AATATGGAGGAAACACCGATAATGGAGGAAGTATATGCCATGGCCTCAGAGAAGAAGAAG
                      ____________________________________________________________
consensus             AATATGGAGGAAACACCGATAATGGAGGAAGTATATGCCATGGCCTCAGAGAAGAAGAAG
 
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JMFS095C10+           AAGAAGAAGAAGAAGAAGGG                                        
JMFS057A02+           AAGAAGAAGAAGAAGAAGGG                                        
JMFF028B20+           AAGAAGAAGAAGAAGAAGGGGATAAGGGTGCGGTTGTATGGGGTTTAAGGAAAGT     
JMSF037L06+           AAGAAGAAGAAGAAGAAGGGGATAAGGGTGCGGTTGTATGGGGTTTAAGGGAAGTGAATC
                      ____________________________________________________________
consensus             AAGAAGAAGAAGAAGAAGGGGATAAGGGTGCGGTTGTATGGGGTTTAAGGGAAGTGAATC