| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007K03 | Sequence | 628 | 005214 (9) | ref|XP_006362548.1| | 1e-67 | PREDICTED: GDT1-like protein 4-like [Solanum tuberosum] | 803 | 005214 (9) | ref|XP_011070827.1| | 4e-49 | PREDICTED: GDT1-like protein 4 [Sesamum indicum] |
| JMFF010F09 | Sequence | 559 | 005214 (9) | ref|XP_004238953.1| | 9e-77 | PREDICTED: GDT1-like protein 4 [Solanum lycopersicum] | 751 | 005214 (9) | ref|XP_011070827.1| | 3e-62 | PREDICTED: GDT1-like protein 4 [Sesamum indicum] |
| JMFN005D02 | Sequence | 633 | 005214 (9) | ref|XP_006362548.1| | 5e-97 | PREDICTED: GDT1-like protein 4-like [Solanum tuberosum] | |||||
| JMFN038B08 | Sequence | 607 | 005214 (9) | ref|XP_004238953.1| | 5e-93 | PREDICTED: GDT1-like protein 4 [Solanum lycopersicum] | |||||
| JMSF007E01 | Sequence | 384 | 005214 (9) | ref|XP_004238953.1| | 4e-44 | PREDICTED: GDT1-like protein 4 [Solanum lycopersicum] | 759 | 005214 (9) | ref|XP_011070827.1| | 4e-93 | PREDICTED: GDT1-like protein 4 [Sesamum indicum] |
| JMSF037D07 | Sequence | 618 | 005214 (9) | ref|XP_006362548.1| | 8e-64 | PREDICTED: GDT1-like protein 4-like [Solanum tuberosum] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF007K03- TAAGACAACGCACACACTCTACAAAAGTGCCAGTGATTACAAA
____________________________________________________________
consensus TAAGACAACGCACACACTCTACAAAAGTGCCAGTGATTACAAA
. : . : . : . : . : . :
rJMFF007K03- ATGTCCGGAAAATCTTTGCCATAATTTTCACTTTATAACAAGAAAAAAATGGCAGTCCAA
rJMFF010F09- AAAAAATGGCAGTCCAA
____________________________________________________________
consensus ATGTCCGGAAAATCTTTGCCATAATTTTCACTTTATAACAAGAAAAAAATGGCAGTCCAA
. : . : . : . : . : . :
rJMFF007K03- TTTGTGCAAGCACACACTTCTATATATGATCGTCAGAGAACAAGGACAACAAAATGGAAC
rJMFF010F09- TTTGTGCAAGCACACACTTCTATATATGATCGTCAGAGAACAAGGACAACAAAATGGAAC
____________________________________________________________
consensus TTTGTGCAAGCACACACTTCTATATATGATCGTCAGAGAACAAGGACAACAAAATGGAAC
. : . : . : . : . : . :
rJMFF007K03- TAATTTTCAGTTTATAACAAGAAAAAAAATGGCGGTTCGATTTGTCAAACACACACTTCT
rJMFF010F09- TAATTTTCAGTTTATAACAAGAAAAAAAATGGCGGTTCGATTTGTCAAACACACACTTCT
rJMSF007E01- AACACACACTTCT
____________________________________________________________
consensus TAATTTTCAGTTTATAACAAGAAAAAAAATGGCGGTTCGATTTGTCAAACACACACTTCT
. : . : . : . : . : . :
rJMFF007K03- ATCTATGATCATCATAGGACAAGGATAATAAAATGTAATATTTTTTTTCTAACTAGTTTA
rJMFF010F09- ATCTATGATCATCATAGGACAAGGATAATAAAATGTAATATTTTTTTTCTAACTAGTTTA
rJMSF007E01- ATCTATGATCATCATAGGACAAGGATAATAAAATGTAATATTTTTTTTCTAACTAGTTTA
____________________________________________________________
consensus ATCTATGATCATCATAGGACAAGGATAATAAAATGTAATATTTTTTTTCTAACTAGTTTA
. : . : . : . : . : . :
rJMFF007K03- TAGCATTTTGGCTGACCATAATATGTGATTGCTGATAAATACTAGTCACAGCCATTCTTA
rJMFF010F09- TAGCATTTTGGCTGACCATAATATGTGATTGCTGATAAATACTAGTCACAGCCATTCTTA
rJMSF007E01- TAGCATTTTGGCTGACCATAATATGTGATTGCTGATAAATACTAGTCACAGCCATTCTTA
____________________________________________________________
consensus TAGCATTTTGGCTGACCATAATATGTGATTGCTGATAAATACTAGTCACAGCCATTCTTA
. : . : . : . : . : . :
rJMFF007K03- GTGAACTGGTGAAAGGAGGGACTGAATGCCAAACACAATGAAAAGAACTCCACCAGCAAG
rJMFF010F09- GTGAACTGGTGAAAGGAGGGACTGAATGCCAAACACAATGAAAAGAACTCCACCAGCAAG
rJMSF007E01- GTGAACTGGTGAAAGGAGGGACTGAATGCCAAACACAATGAAAAGAACTCCACCAGCAAG
____________________________________________________________
consensus GTGAACTGGTGAAAGGAGGGACTGAATGCCAAACACAATGAAAAGAACTCCACCAGCAAG
. : . : . : . : . : . :
rJMFF007K03- GGCAATTGCTATCTCAGAAATCTGAGATGCCAAGCTCTTTCCCCCCAATACAGCAGCAAT
rJMFF010F09- GGCAATTGCTCTCTCAGAAATCTGAGATGCCAAGCTCTTTCCCCCCAATACAGCAGCAAT
rJMSF007E01- GGCAATTGCTCTCTCAGAAATCTGAGATGCCAAGCTCTTTCCCCCCAATACAGCAGCAAT
JMFN038B08+ TTCCCCCCAATACAGCAGCAAT
JMFN005D02+ GAGATGCCAAGCTCTTTCCCCCCAATACAGCAGCAAT
____________________________________________________________
consensus GGCAATTGCTCTCTCAGAAATCTGAGATGCCAAGCTCTTTCCCCCCAATACAGCAGCAAT
. : . : . : . : . : . :
rJMFF007K03- AGTACATAAAGCTTGTCCAAGGATTCCTCCAAGAACAACACCCAATGGGTTCTCATCTGC
rJMFF010F09- AGTACATAAAGCTTGTCCAAGGATTCCTCCAAGAACAACACCCAATGGGTTCTCATCTGC
rJMSF007E01- AGTACATAAAGCTTGTCCAAGGATTCCTCCAAGAACAACACCCAATGGGTTCTCATCTGC
JMFN038B08+ AGTACATAAAGCTTGTCCAAGGATTCCTCCAAGAACAACACCCAATGGGTTCTCATCTGC
JMFN005D02+ AGTACATAAAGCTTGTCCAAGGATTCCTCCAAGAACAACACCCAATGGGTTCTCATCTGC
JMFF010F09+ CTCATCTGC
____________________________________________________________
consensus AGTACATAAAGCTTGTCCAAGGATTCCTCCAAGAACAACACCCAATGGGTTCTCATCTGC
. : . : . : . : . : . :
rJMFF007K03- AGCCAGACCAATGGTGGCAATCTGGCTCTTGTCACCCCATTCTCCAAAAAAGGTAATCGA
rJMFF010F09- AGCCAGACCAATGGTGGCAATCTGGCTCTTGTCACCCCATTCTCCAAAAAAGGTAATCGA
rJMSF007E01- AGCCAGACCAATGGTGGCAATCTGGCTCTTGTCACCCCATTCTCCAAAAAAGGTAATCGA
JMFN038B08+ AGCCAGACCAATGGTGGCAATCTGGCTCTTGTCACCCCATTCTCCAAAAAAGGTAATCGA
JMFN005D02+ AGCCAGACCAATGGTGGCAATCTGGCTCTTGTCACCCCATTCTCCAAAAAAGGTAATCGA
JMFF010F09+ AGCCAGACCAATGGTGGCAATCTGGCTCTTGTCACCCCATTCTCCAAAAAAGGTAATCGA
JMFF007K03+ GTCACCCCATTCTCCAAAAAAGGTAATCGA
JMSF037D07+ CTCCAAAAAAGGTAATCGA
____________________________________________________________
consensus AGCCAGACCAATGGTGGCAATCTGGCTCTTGTCACCCCATTCTCCAAAAAAGGTAATCGA
. : . : . : . : . : . :
rJMFF007K03- AAATGCCTTTAGAAGAATCGGTGAGAAAAATTGAGTTAGCAGTGGCCTCCTCTGCTTTTT
rJMFF010F09- AAATGCCTTTAGAAGAATCGGTGAGAAAAATTGAGTTAGCAGTGGCCTCCTCTGCTTTTT
rJMSF007E01- AAATGCCTTTAGAAGAATCGGTGAGAAAAATTGAGTTAGCAGTGGCCTCCTCTGCTTTTT
JMFN038B08+ AAATGCCTTTAGAAGAATCGGTGAGAAAAATTGAGTTAGCAGTGGCCTCCTCTGCTTTTT
JMFN005D02+ AAATGCCTTTAGAAGAATCGGTGAGAAAAATTGAGTTAGCAGTGGCCTCCTCTGCTTTTT
JMFF010F09+ AAATGCCTTTAGAAGAATCGGTGAGAAAAATTGAGTTAGCAGTGGCCTCCTCTGCTTTTT
JMFF007K03+ AAATGCCTTTAGAAGAATCGGTGAGAAAAATTGAGTTAGCAGTGGCCTCCTCTGCTTTTT
JMSF037D07+ AAATGCCTTTAGAAGAATCGGTGAGAAAAATTGAGTTAGCAGTGGCCTCCTCTGCTTTTT
____________________________________________________________
consensus AAATGCCTTTAGAAGAATCGGTGAGAAAAATTGAGTTAGCAGTGGCCTCCTCTGCTTTTT
. : . : . : . : . : . :
rJMFF007K03- CAAATCGTCAATGTCCTTATTGTCCTTATCCCCGTTTTTGGCTGCTCCGCCATTTGCTTT
rJMFF010F09- CAAATCGTCAATGTCCTTATTGTCCTTATCCCCGTTTTTGGCTGCTCCGCCATTTGCTTT
rJMSF007E01- CAAATCGTCAATGTCCTTATTGTCCTTATCCCCGTTTTTGGCTGCTCCGCCATTTGCTTT
JMFN038B08+ CAAATCGTCAATGTCCTTATTGTCCTTATCCCCGTTTTTGGCTGCTCCGCCATTTGCTTT
JMFN005D02+ CAAATCGTCAATGTCCTTATTGTCCTTATCCCCGTTTTTGGCTGCTCCGCCATTTGCTTT
JMFF010F09+ CAAATCGTCAATGTCCTTATTGTCCTTATCCCCGTTTTTGGCTGCTCCGCCATTTGCTTT
JMFF007K03+ CAAATCGTCAATGTCCTTATTGTCCTTATCCCCGTTTTTGGCTGCTCCGCCATTTGCTTT
JMSF037D07+ CAAATCGTCAATGTCCTTATTGTCCTTATCCCCGTTTTTGGCTGCTCCGCCATTTGCTTT
____________________________________________________________
consensus CAAATCGTCAATGTCCTTATTGTCCTTATCCCCGTTTTTGGCTGCTCCGCCATTTGCTTT
. : . : . : . : . : . :
rJMFF007K03- GAGATCAGCATCCAGTTNGTGCTTCGACTTCAGCCAATTCTTCAGACTCCCCATCATTAA
rJMFF010F09- GAGATCAGCATCCAGTT-CTGCTTCGACTTCAGCCAATTCTTCAGACTCCCCATCATTAA
rJMSF007E01- GAGATCAGCATCCAGTT-CTGGTTCGACTTCAGCCAATTCTTCAGACTCCCCATCATTAA
JMFN038B08+ GAGATCAGCATCCAGTT-CTGCTTCGACTTCAGCCAATTCTTCAGACTCCCCATCATTAA
JMFN005D02+ GAGATCAGCATCCAGTT-CTGCTTCGACTTCAGCCAATTCTTCAGACTCCCCATCATTAA
JMFF010F09+ GAGATCAGCATCCAGTT-CTGCTTCGACTTCAGCCAATTCTTCAGACTCCCCATCATTAA
JMFF007K03+ GAGATCAGCATCCAGTT-CTGCTTCGACTTCAGCCAATTCTTCAGACTCCCCATCATTAA
JMSF037D07+ GAGATCAGCATCCAGTT-CTGCTTCGACTTCAGCCAATTCTTCAGACTCCCCATCATTAA
____________________________________________________________
consensus GAGATCAGCATCCAGTT-CTGCTTCGACTTCAGCCAATTCTTCAGACTCCCCATCATTAA
. : . : . : . : . : . :
rJMFF007K03- AGGCATCCCATAATGACCATAGCCCAAACCCCAAAAACAA
rJMFF010F09- AGGCATCCCATAATGACCATAGCCCAAACCCCAAAAACAATATACTTGTAATATGATGAG
rJMSF007E01- AGGCATCCCATAATGACCATAGCCCAAACCCCAAAAACAATATACTTGTAATATGATGAG
JMFN038B08+ AGGCATCCCATAATGACCATAGCCCAAACCCCAAAAACAATATACTTGTAATATGATGAG
JMFN005D02+ AGGCATCCCATAATGACCATAGCCCAAACCCCAAAAACAATATACTTGTAATATGATGAG
JMFF010F09+ AGGCATCCCATAATGACCATAGCCCAAACCCCAAAAACAATATACTTGTAATATGATGAG
JMFF007K03+ AGGCATCCCATAATGACCATAGCCCAAACCCCAAAAACAATATACTTGTAATATGATGAG
JMSF007E01+ ACAATATACTTGTAATATGATGAG
JMSF037D07+ AGGCATCCCATAATGACCATAGCCCAAACCCCAAAAACAATATACTTGTAATATGATGAG
____________________________________________________________
consensus AGGCATCCCATAATGACCATAGCCCAAACCCCAAAAACAATATACTTGTAATATGATGAG
. : . : . : . : . : . :
rJMFF010F09- TCCATTTTCGAGAGA
rJMSF007E01- TCCATTTTCGAGAGATCAAATTGGGAGCAGCCCAACCAACAACAGCAGATAGAATGGTCA
JMFN038B08+ TCCATTTTCGAGAGATCAAATTGGGAGCAGCCCAACCAACAACAGCAGATAGAATGGTCA
JMFN005D02+ TCCATTTTCGAGAGATCAAATTGGGAGCAGCCCAACCAACAACAGCAGATAGAATGGTCA
JMFF010F09+ TCCATTTTCGAGAGATCAAATTGGGAGCAGCCCAACCAACAACAGCAGATAGAATGGTCA
JMFF007K03+ TCCATTTTCGAGAGATCAAATTGGGAGCAGCCCAACCAACAACAGCAGATAGAATGGTCA
JMSF007E01+ TCCATTTTCGAGAGATCAAATTGGGAGCAGCCCAACCAACAACAGCAGATAGAATGGTCA
JMSF037D07+ TCCATTTTCGAGAGATCAAATTGGGAGCAGCCCAACCAACAACAGCAGATAGAATGGTCA
____________________________________________________________
consensus TCCATTTTCGAGAGATCAAATTGGGAGCAGCCCAACCAACAACAGCAGATAGAATGGTCA
. : . : . : . : . : . :
rJMSF007E01- TCACAATTAAAGCTGAAAGGCAACCTGCCAAGACAAGTCTCCTTGGATGACGCATTGCCA
JMFN038B08+ TCACAATTAAAGCTGAAAGGCAACCTGCCAAGACAAGTCTCCTTGGATGACGCATTGCCA
JMFN005D02+ TCACAATTAAAGCTGAAAGGCAACCTGCCAAGACAAGTCTCCTTGGATGACGCATTGCCA
JMFF010F09+ TCACAATTAAAGCTGAAAGGCAACCTGCCAAGACAAGTCTCCTTGGATGACGCATTGCCA
JMFF007K03+ TCACAATTAAAGCTGAAAGGCAACCTGCCAAGACAAGTCTCCTTGGATGACGCATTGCCA
JMSF007E01+ TCACAATTAAAGCTGAAAGGCAACCTGCCAAGACAAGTCTCCTTGGATGACGCATTGCCA
JMSF037D07+ TCACAATTAAAGCTGAAAGGCAACCTGCCAAGACAAGTCTCCTTGGATGACGCATTGCCA
____________________________________________________________
consensus TCACAATTAAAGCTGAAAGGCAACCTGCCAAGACAAGTCTCCTTGGATGACGCATTGCCA
. : . : . : . : . : . :
rJMSF007E01- ATATCGCAGC
JMFN038B08+ ATATCGCAGCTGCGAAGAACGTCTTGTCCCCGATTTCGGAGAGCACAGTCATCGCCAGCG
JMFN005D02+ ATATCGCAGCTGCGAAGAACGTCTTGTCCCCGATTTCGGAGAGCACAGTCATCGCCAGCG
JMFF010F09+ ATATCGCAGCTGCGAAGAACGTCTTGTCCCCGATTTCGGAGAGCACAGTCATCGCCAGCG
JMFF007K03+ ATATCGCAGCTGCGAAGAACGTCTTGTCCCCGATTTCGGAGAGCACAGTCATCGCCAGCG
JMSF007E01+ ATATCGCAGCTGCGAAGAACGTCTTGTCCCCGATTTCGGAGAGCACAGTCATCGCCAGCG
JMSF037D07+ ATATCGCAGCTGCGAAGAACGTCTTGTCCCCGATTTCGGAGAGCACAGTCATCGCCAGCG
____________________________________________________________
consensus ATATCGCAGCTGCGAAGAACGTCTTGTCCCCGATTTCGGAGAGCACAGTCATCGCCAGCG
. : . : . : . : . : . :
JMFN038B08+ ACTTCGTGAAACCCTGTGCGACGGAGAGACTC
JMFN005D02+ ACTTCGTGAAACCCTGTGCGACGGAGAGACTCATCTCCGTAGCTGCGAACAAACGGG
JMFF010F09+ ACTTCGTGAAACCCTGTGCGACGGAGAGACTCATCTCCGTAGCTGCGAACAAACGGGACT
JMFF007K03+ ACTTCGTGAAACCCTGTGCGACGGAGAGACTCATCTCCGTAGCTGCGAACAAACGGGACT
JMSF007E01+ ACTTCGTGAAACCCTGTGCGACGGAGAGACTCATCTCCGTAGCTGCGAACAAACGGGACT
JMSF037D07+ ACTTCGTGAAACCCTGTGCGACGGAGAGACTCATCTCCGTAGCTGCGAACAAACGGGACT
____________________________________________________________
consensus ACTTCGTGAAACCCTGTGCGACGGAGAGACTCATCTCCGTAGCTGCGAACAAACGGGACT
. : . : . : . : . : . :
JMFF010F09+ GCTGGAATAAC
JMFF007K03+ GCTGGAATAACCACAGAACTGAGAGCGTTGTGTGTACGTATTGGGATTTTGAAGCCTTTT
JMSF007E01+ GCTGGAATAACCACAGAACTGAGAGCGTTGTGTGTACGTATTGGGATTTTGAAGCCTTTT
JMSF037D07+ GCTGGAATAACCACAGAACTGAGAGCGTTGTGTGTACGTATTGGGATTTTGAAGCCTTTT
____________________________________________________________
consensus GCTGGAATAACCACAGAACTGAGAGCGTTGTGTGTACGTATTGGGATTTTGAAGCCTTTT
. : . : . : . : . : . :
JMFF007K03+ CCGTACTGTGTTGACTCGGGGGATCCGCCGAGTCTTGAAAATTGGAATCTAGTAAAAGC
JMSF007E01+ CCGTACTGTGTTGACTCGGGGGATCCGCCGAGTCTTGAAAATTGGAATCTAGTAAAAGC
JMSF037D07+ CCGTACTGTGTTGACTCGGGGGATCCGCCGAGTCTTGAAAATTGGAATCTAGTAAAAGCC
____________________________________________________________
consensus CCGTACTGTGTTGACTCGGGGGATCCGCCGAGTCTTGAAAATTGGAATCTAGTAAAAGCC