| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF004D13 | Sequence | 349 | 005212 (4) | 390 | 007180 (5) | ref|XP_010649126.1| | 4e-19 | PREDICTED: transmembrane protein 53 [Vitis vinifera] | |||
| JMSF013J14 | Sequence | 552 | 005212 (4) | ref|XP_004232422.1| | 4e-26 | PREDICTED: transmembrane protein 53 [Solanum lycopersicum] | 761 | 007180 (5) | ref|XP_011099637.1| | 4e-71 | PREDICTED: transmembrane protein 53 [Sesamum indicum] |
| JMSF035P23 | Sequence | 648 | 005212 (4) | ref|XP_004232422.1| | 1e-41 | PREDICTED: transmembrane protein 53 [Solanum lycopersicum] | 526 | 007180 (5) | ref|XP_011099637.1| | 3e-37 | PREDICTED: transmembrane protein 53 [Sesamum indicum] |
| JMSF036P23 | Sequence | 648 | 005212 (4) | ref|XP_004232422.1| | 1e-41 | PREDICTED: transmembrane protein 53 [Solanum lycopersicum] | 522 | 007180 (5) | ref|XP_011099637.1| | 1e-36 | PREDICTED: transmembrane protein 53 [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMSF035P23+ ACTGCGACACCCACGATGCGAGCTCATGAGCCACTGATACAACCCTCT
JMSF036P23+ ACTGCGACACCCACGATGCGAGCTCATGAGCCACTGATACAACCCTCT
____________________________________________________________
consensus ACTGCGACACCCACGATGCGAGCTCATGAGCCACTGATACAACCCTCT
. : . : . : . : . : . :
JMSF035P23+ CCTCGAGTTTCCTCGCTAAATCGAACGAAAGGACATCTCTCACCGAAGCTACGAACGTAA
JMSF013J14+ AGCTACGAACGTAA
JMSF036P23+ CCTCGAGTTTCCTCGCTAAATCGAACGAAAGGACATCTCTCACCGAAGCTACGAACGTAA
____________________________________________________________
consensus CCTCGAGTTTCCTCGCTAAATCGAACGAAAGGACATCTCTCACCGAAGCTACGAACGTAA
. : . : . : . : . : . :
JMSF035P23+ CCGCGTGAATACCCTTGGAATTATACAACTCCGCATACCTCCTCAAGTGCTTAGGCTTCG
JMSF013J14+ CCGCGTGAATACCCTTGGAATTATACAACTCCGCATACCTCCTCAAGTGCTTAGGCTTCG
JMSF036P23+ CCGCGTGAATACCCTTGGAATTATACAACTCCGCATACCTCCTCAAGTGCTTAGGCTTCG
____________________________________________________________
consensus CCGCGTGAATACCCTTGGAATTATACAACTCCGCATACCTCCTCAAGTGCTTAGGCTTCG
. : . : . : . : . : . :
JMSF035P23+ CCCCAAGCCAACCCAGCAAGACCACAGTCACCACCGGGCCGTCCTTTCCCAGACCCCGAA
JMSF013J14+ CCCCAAGCCAACCCAGCAAGACCACAGTCACCACCGGGCCGTCCTTTCCCAGACCCCGAA
JMSF036P23+ CCCCAAGCCAACCCAGCAAGACCACAGTCACCACCGGGCCGTCCTTTCCCAGACCCCGAA
____________________________________________________________
consensus CCCCAAGCCAACCCAGCAAGACCACAGTCACCACCGGGCCGTCCTTTCCCAGACCCCGAA
. : . : . : . : . : . :
JMSF035P23+ TTCCGCGCCCCTTTTCGCCATCCGAAGCGAAATGCCAATCGAGGGGCGTGCCTTTGGGGT
JMSF013J14+ TTCCGCGCCCCTTTTCGCCATCCGAAGCGAAATGCCAATCGAGGGGCGTGCCTTTGGGGT
JMSF004D13+ GT
JMSF036P23+ TTCCGCGCCCCTTTTCGCCATCCGAAGCGAAATGCCAATCGAGGGGCGTGCCTTTGGGGT
____________________________________________________________
consensus TTCCGCGCCCCTTTTCGCCATCCGAAGCGAAATGCCAATCGAGGGGCGTGCCTTTGGGGT
. : . : . : . : . : . :
JMSF035P23+ TAGAAGAAATACGGGCGAAACGGTCGGAGGAGAATATGGAACTGAGAATTTGCGAATGGG
JMSF013J14+ TAGAAGAAATACGGGCGAAACGGTCGGAGGAGAATATGGAACTGAGAATTTGCGAATGGG
JMSF004D13+ TAGAAGAAATACGGGCGAAACGTTCGGAGGAGAATATGGAACTGAGAATTTGCGAATGGG
JMSF036P23+ TAGAAGAAATACGGGCGAAACGGTCGGAGGAGAATATGGAACTGAGAATTTGCGAATGGG
____________________________________________________________
consensus TAGAAGAAATACGGGCGAAACGGTCGGAGGAGAATATGGAACTGAGAATTTGCGAATGGG
. : . : . : . : . : . :
JMSF035P23+ AAAGCAGCGGGGATGAAGGGATTGAAGGCAAGGCGTTCGACGATTTGCCAATATGGAGGC
JMSF013J14+ AAAGCAGCGGGGATGAAGGGATTGAAGGCAAGGCGTTCGACGATTTGCCAATATGGAGGC
JMSF004D13+ AAAGCAGCGGGGATGAAGGGATTGAAGGCAAGGCGTTCGACGATTTGCCAATATGGAGGC
JMSF036P23+ AAAGCAGCGGGGATGAAGGGATTGAAGGCAAGGCGTTCGACGATTTGCCAATATGGAGGC
____________________________________________________________
consensus AAAGCAGCGGGGATGAAGGGATTGAAGGCAAGGCGTTCGACGATTTGCCAATATGGAGGC
. : . : . : . : . : . :
JMSF035P23+ CATTGTACGTGGAAAGTGAGAGACGGGATGCTGAAGCTGGACGGTGACGATGTGGAATTG
JMSF013J14+ CATTGTACGTGGAAAGTGAGAGACGGGATGCTGAAGCTGGACGGTGACGATGTGGAATTG
JMSF004D13+ CATTGTACGTGGAAAGTGAGAGACGGGATGCTGAAGCTGGACGGTGACGATGTGGAATTG
JMSF036P23+ CATTGTACGTGGAAAGTGAGAGACGGGATGCTGAAGCTGGACGGTGACGATGTGGAATTG
____________________________________________________________
consensus CATTGTACGTGGAAAGTGAGAGACGGGATGCTGAAGCTGGACGGTGACGATGTGGAATTG
. : . : . : . : . : . :
JMSF035P23+ TGGAAATATGTTTGGGGGAGAAGCTCTGAGAAGGGGTTCGGAGGAGGAGAGGGACGGAGA
JMSF013J14+ TGGAAATATGTTTGGGGGAGAAGCTCTGAGAAGGGGTTCGGAGGAGGAGAGGGACGGAGA
JMSF004D13+ TGGAAATATGTTTGGGGGAGAAGCTCTGAGAAGGGGTTCGGAGGAGGAGAGGGACGGAGA
JMSF036P23+ TGGAAATATGTTTGGGGGAGAAGCTCTGAGAAGGGGTTCGGAGGAGGAGAGGGACGGAGA
____________________________________________________________
consensus TGGAAATATGTTTGGGGGAGAAGCTCTGAGAAGGGGTTCGGAGGAGGAGAGGGACGGAGA
. : . : . : . : . : . :
JMSF035P23+ TGTGGCGGTGGGAGGAGGCGGCTAGTCGAAGGGTGGCTTCCATCACCGTCGGCGATGTGA
JMSF013J14+ TGTGGCGGTGGGAGGAGGCGGCTAGTCGAAGGGTGGCTTCCATCACCGTCGGCGATGTGA
JMSF004D13+ TGTGGCGGTGGGAGGAGGCGGCTAGTCGAAGGGTGGCTTCCATCACCGTCGGCGATGTGA
JMSF036P23+ TGTGGCGGTGGGAGGAGGCGGCTAGTCGAAGGGTGGCTTCCATCACCGTCGGCGATGTGA
____________________________________________________________
consensus TGTGGCGGTGGGAGGAGGCGGCTAGTCGAAGGGTGGCTTCCATCACCGTCGGCGATGTGA
. : . : . : . : . : . :
JMSF035P23+ TCAACAGAAATAGTTAAGGCGATGTGAAGAAGACTTTGGCGCGACTGCGGCGTCGTT
JMSF013J14+ TCAACAGAAATAGTTAAGGCGATGTGAAGAAGACTTTGGCGCGACTGCGGCGTCGTT
JMSF004D13+ TCAACAGAAATAGTTAAGGCGATGTGAAGAAGACTTTGGCGCGAC
JMSF036P23+ TCAACAGAAATAGTTAAGGCGATGTGAAGAAGACTTTGGCGCGACTGCGGCGTCGTTATC
____________________________________________________________
consensus TCAACAGAAATAGTTAAGGCGATGTGAAGAAGACTTTGGCGCGACTGCGGCGTCGTTATC