Contig 005210:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027F21Sequence608005210 (6)gb|KDP22396.1|2e-78hypothetical protein JCGZ_26227 [Jatropha curcas]617005210 (6)gb|KDP22396.1|2e-78hypothetical protein JCGZ_26227 [Jatropha curcas]
JMSF036O02Sequence640005210 (6)ref|XP_007038436.1|3e-78Ribosomal protein S10p/S20e family protein isoform 1 [Theobroma cacao] ref|XP_0586005210 (6)ref|XP_007038436.1|2e-78Ribosomal protein S10p/S20e family protein isoform 1 [Theobroma cacao] ref|XP_0
JMSF044J03Sequence627005210 (6)ref|XP_007038436.1|3e-78Ribosomal protein S10p/S20e family protein isoform 1 [Theobroma cacao] ref|XP_0572005210 (6)gb|KDP22396.1|2e-78hypothetical protein JCGZ_26227 [Jatropha curcas]

Alignment

This contig is upended


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JMSF027F21-                                              GAGATACACCTATACAAAAATTGTT
rJMSF027F21+                                             GAGATACACCTATACAAAAATTGTT
                      ____________________________________________________________
consensus                                                GAGATACACCTATACAAAAATTGTT
 
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JMSF027F21-           ACGGGTTGCAGCTTTCCCGACGGTATCCAGCTCACTTCCACTGCAGCTTCCTCCGTCCGT
rJMSF027F21+          ACGGGTTGCAGCTTTCCCGACGGTATCCAGCTCACTTCCACTGCAGCTTCCTCCGTCCGT
rJMSF044J03+                                  ATCCAGCTCACTTNCACTGCAGCTTCCTCCGTCCGT
rJMSF036O02+                               GGTATCCAGCTCACTTCCACTGCAGCTTCCTCCGTCCGT
JMSF044J03-                                   ATCCAGCTCACTTCCACTGCAGCTTCCTCCGTCCGT
JMSF036O02-                                GGTATCCAGCTCACTTCCACTGCAGCTTCCTCCGTCCGT
                      ____________________________________________________________
consensus             ACGGGTTGCAGCTTTCCCGACGGTATCCAGCTCACTTCCACTGCAGCTTCCTCCGTCCGT
 
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JMSF027F21-           CCGTCTCAACTTATATCCGAGCAAAAGAATGGCATACCAAGCAATGAAGCCGACGAAAGC
rJMSF027F21+          CCGTCTCAACTTATATCCGAGCAAAAGAATGGCATACCAAGCAATGAAGCCGACGAAAGC
rJMSF044J03+          CCGTCTCAANTTATATCCGAGCAAAAGAATGGCATACCAAGCAATGAAGCCGACGAAAGC
rJMSF036O02+          CCGTCTCAACTTATATCCGAGCAAAAGAATGGCATACCAAGCAATGAAGCCGACGAAAGC
JMSF044J03-           CCGTCTCAACTTATATCCGAGCAAAAGAATGGCATACCAAGCAATGAAGCCGACGAAAGC
JMSF036O02-           CCGTCTCAACTTATATCCGAGCAAAAGAATGGCATACCAAGCAATGAAGCCGACGAAAGC
                      ____________________________________________________________
consensus             CCGTCTCAACTTATATCCGAGCAAAAGAATGGCATACCAAGCAATGAAGCCGACGAAAGC
 
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JMSF027F21-           AGGGTTGGAGGAGCCCCAGGAGCAGATTCATAAGATCAGAATCACTCTCTCCTCCAAGAA
rJMSF027F21+          AGGGTTGGAGGAGCCCCAGGAGCAGATTCATAAGATCAGAATCACTCTCTCCTCCAAGAA
rJMSF044J03+          AGGGTTGGAGGAGCCCCAGGAGCAGATTCATAAGATCAGAATCACTCTCTCCTCCAAGAA
rJMSF036O02+          AGGGTTGGAGGAGCCCCAGGAGCAGATTCATAAGATCAGAATCACTCTCTCCTCCAAGAA
JMSF044J03-           AGGGTTGGAGGAGCCCCAGGAGCAGATTCATAAGATCAGAATCACTCTCTCCTCCAAGAA
JMSF036O02-           AGGGTTGGAGGAGCCCCAGGAGCAGATTCATAAGATCAGAATCACTCTCTCCTCCAAGAA
                      ____________________________________________________________
consensus             AGGGTTGGAGGAGCCCCAGGAGCAGATTCATAAGATCAGAATCACTCTCTCCTCCAAGAA
 
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JMSF027F21-           CGTAAAGAACCTCGAAAAGGTTTGCGGTGATTTGGTTCGAGGTGCTAAGGACAAAAGACT
rJMSF027F21+          CGTAAAGAACCTCGAAAAGGTTTGCGGTGATTTGGTTCGAGGTGCTAAGGACAAAAGACT
rJMSF044J03+          CGTAAAGAACCTCGAAAAGGTTTGCGGTGATTTGGTTCGAGGTGCTAAGGACAAAAGACT
rJMSF036O02+          CGTAAAGAACCTCGAAAAGGTTTGCGGTGATTTGGTTCGAGGTGCTAAGGACAAAAGACT
JMSF044J03-           CGTAAAGAACCTCGAAAAGGTTTGCGGTGATTTGGTTCGAGGTGCTAAGGACAAAAGACT
JMSF036O02-           CGTAAAGAACCTCGAAAAGGTTTGCGGTGATTTGGTTCGAGGTGCTAAGGACAAAAGACT
                      ____________________________________________________________
consensus             CGTAAAGAACCTCGAAAAGGTTTGCGGTGATTTGGTTCGAGGTGCTAAGGACAAAAGACT
 
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JMSF027F21-           TAGGGTCAAGGGACCAGTGAGGATGCCCACCAAAGTTCTTCACATTACCACTAGGAAGTC
rJMSF027F21+          TAGGGTCAAGGGACCAGTGAGGATGCCCACCAAAGTTCTTCACATTACCACTAGGAAGTC
rJMSF044J03+          TAGGGTCAAGGGACCAGTGAGGATGCCCACCAAAGTTCTTCACATTACCACTAGGAAGTC
rJMSF036O02+          TAGGGTCAAGGGACCAGTGAGGATGCCCACCAAAGTTCTTCACATTACCACTAGGAAGTC
JMSF044J03-           TAGGGTCAAGGGACCAGTGAGGATGCCCACCAAAGTTCTTCACATTACCACTAGGAAGTC
JMSF036O02-           TAGGGTCAAGGGACCAGTGAGGATGCCCACCAAAGTTCTTCACATTACCACTAGGAAGTC
                      ____________________________________________________________
consensus             TAGGGTCAAGGGACCAGTGAGGATGCCCACCAAAGTTCTTCACATTACCACTAGGAAGTC
 
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JMSF027F21-           TCCCTGTGGAGAAGGTACTAACACTTGGGACAGGTTTGAACTTCGTGTTCACAAGAGGGT
rJMSF027F21+          TCCCTGTGGAGAAGGTACTAACACTTGGGACAGGTTTGAACTTCGTGTTCACAAGAGGGT
rJMSF044J03+          TCCCTGTGGAGAAGGTACTAACACTTGGGACAGGTTTGAACTTCGTGTTCACAAGAGGGT
rJMSF036O02+          TCCCTGTGGAGAAGGTACTAACACTTGGGACAGGTTTGAACTTCGTGTTCACAAGAGGGT
JMSF044J03-           TCCCTGTGGAGAAGGTACTAACACTTGGGACAGGTTTGAACTTCGTGTTCACAAGAGGGT
JMSF036O02-           TCCCTGTGGAGAAGGTACTAACACTTGGGACAGGTTTGAACTTCGTGTTCACAAGAGGGT
                      ____________________________________________________________
consensus             TCCCTGTGGAGAAGGTACTAACACTTGGGACAGGTTTGAACTTCGTGTTCACAAGAGGGT
 
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JMSF027F21-           TATTGACCTCTTCAGCTCCCCAGAAGTAGTCAAACAGATTACGTCAATTACTATTGAACC
rJMSF027F21+          TATTGACCTCTTCAGCTCCCCAGAAGTAGTCAAACAGATTACGTCAATTACTATTGAACC
rJMSF044J03+          TATTGACCTCTTCAGCTCCCCAGAAGTAGTCAAACAGATTACGTCAATTACTATTGAACC
rJMSF036O02+          TATTGACCTCTTCAGCTCCCCAGAAGTAGTCAAACAGATTACGTCAATTACTATTGAACC
JMSF044J03-           TATTGACCTCTTCAGCTCCCCAGAAGTAGTCAAACAGATTACGTCAATTACTATTGAACC
JMSF036O02-           TATTGACCTCTTCAGCTCCCCAGAAGTAGTCAAACAGATTACGTCAATTACTATTGAACC
                      ____________________________________________________________
consensus             TATTGACCTCTTCAGCTCCCCAGAAGTAGTCAAACAGATTACGTCAATTACTATTGAACC
 
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JMSF027F21-           TGGGGTCGAGGTTGAAGTCACCATTGCCGACTCTTAGTTTGTGTGCCTCCCTGGTGATAA
rJMSF027F21+          TGGGGTCGAGGTTGAAGTCACCATTGCCGACTCTTAGTTTGTGTGCCTCCCTGGTGATAA
rJMSF044J03+          TGGGGTCGAGGTTGAAGTCACCATTGCCGACTCTTAGTTTGTGTGCCTCCCTGGTGATAA
rJMSF036O02+          TGGGGTCGAGGTTGAAGTCACCATTGCCGACTCTTAGTTTGTGTGCCTCCCTGGTGATAA
JMSF044J03-           TGGGGTCGAGGTTGAAGTCACCATTGCCGACTCTTAGTTTGTGTGCCTCCCTGGTGATAA
JMSF036O02-           TGGGGTCGAGGTTGAAGTCACCATTGCCGACTCTTAGTTTGTGTGCCTCCCTGGTGATAA
                      ____________________________________________________________
consensus             TGGGGTCGAGGTTGAAGTCACCATTGCCGACTCTTAGTTTGTGTGCCTCCCTGGTGATAA
 
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JMSF027F21-           TGGTAATTTGGAATTTCCATCCCGTACTCCTCACGGGTGTGAAGGTTGTAGCCAGTTTAT
rJMSF027F21+          TGGTAATTTGGAATTTCCATCCCGTACTCCTCACGGGTGTGAAGGTTGTAGCCAGTTTAT
rJMSF044J03+          TGGTAATTTGGAATTTCCATCCCGTACTCCTCACGGGTGTGAAGGTTGTAGCCAGTTTAT
rJMSF036O02+          TGGTAATTTGGAATTTCCATCCCGTACTCCTCACGGGTGTGAAGGTTGTAGCCAGTTTAT
JMSF044J03-           TGGTAATTTGGAATTTCCATCCCGTACTCCTCACGGGTGTGAAGGTTGTAGCCAGTTTAT
JMSF036O02-           TGGTAATTTGGAATTTCCATCCCGTACTCCTCACGGGTGTGAAGGTTGTAGCCAGTTTAT
                      ____________________________________________________________
consensus             TGGTAATTTGGAATTTCCATCCCGTACTCCTCACGGGTGTGAAGGTTGTAGCCAGTTTAT
 
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JMSF027F21-           AGCATCATTCGGTTTTGGAGTTACATTTTTTAAATTTCAGCAA                 
rJMSF027F21+          AGCATCATTCGGTTTTGGAGTTACATTTTTTAAATTTCAGCAAAGACTTTCA        
rJMSF044J03+          AGCATCATT                                                   
rJMSF036O02+          AGCATCATTCGGTTTTGGAGTTACATTTTTTAAATTTCAGCAAAGACTTTCAATGTTAGG
JMSF044J03-           AGCATCATTCGGTTTTGGAGTTACATTTTTTAAATTTCAGCAAAGACTTTCAATGTTAGG
JMSF036O02-           AGCATCATTCGGTTTTGGAGTTACATTTTTTAAATTTCAGCAAAGACTTTCAATGTTAGG
                      ____________________________________________________________
consensus             AGCATCATTCGGTTTTGGAGTTACATTTTTTAAATTTCAGCAAAGACTTTCAATGTTAGG
 
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rJMSF036O02+          AACTAG                                                      
JMSF044J03-           AACTAGAACAATTTTGTCAATTTCAATGCCAATGTTGATC                    
JMSF036O02-           AACTAGAACAATTTTGTCAATTTCAATGCCAATGTTGATCATTTTCCTGCAAAAAAAAAA
                      ____________________________________________________________
consensus             AACTAGAACAATTTTGTCAATTTCAATGCCAATGTTGATCATTTTCCTGCAAAAAAAAAA