Contig 005204:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035P05+                                                                      C
                      ____________________________________________________________
consensus                                                                        C
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035P05+           TCCACAACCGAGATGCAATCAACCGGGCATGCACCAATGGCTTCTTGAATTTTGTGCTCG
                      ____________________________________________________________
consensus             TCCACAACCGAGATGCAATCAACCGGGCATGCACCAATGGCTTCTTGAATTTTGTGCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035P05+           GGATCTGCCCATTGTGCAACAACTCTGGCTCGTCCATAAACAGATTCAACCGCAAATGTT
                      ____________________________________________________________
consensus             GGATCTGCCCATTGTGCAACAACTCTGGCTCGTCCATAAACAGATTCAACCGCAAATGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035P05+           TTCTCAGCAAATAAAGCACATTTTAGGCAGCCTACACACCTCACTTCATCAACAATTACA
                      ____________________________________________________________
consensus             TTCTCAGCAAATAAAGCACATTTTAGGCAGCCTACACACCTCACTTCATCAACAATTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028M18+                                  AAACCATGCAGAGTATATTGGCTTGCCTGTGTAGCCT
JMSF035P05+           GCTCTATTTTCACTCTCTGGACCAAACCATGCAGAGTATATTGGCTTGCCTGTGTAGCCT
                      ____________________________________________________________
consensus             GCTCTATTTTCACTCTCTGGACCAAACCATGCAGAGTATATTGGCTTGCCTGTGTAGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028M18+           CGTAAATCCGCAAATTTTGATTGCTCCTTATCGTAGACGAAACGGGAGTTGGGGTCAGAC
JMSF035P05+           CGTAAATCCGCAAATTCTGATTGCTCCTTATCGTAGACGAAACGGGAGTTGGGGTCAGAC
                      ____________________________________________________________
consensus             CGTAAATCCGCAAATTTTGATTGCTCCTTATCGTAGACGAAACGGGAGTTGGGGTCAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028M18+           AGAAGAGCGTAGGCTTCGTTGAGTACGATGGCCATGTCGTGACCCGCCGGGCCGGCGATG
JMSF035P05+           AGAAGAGCGTAGGCTTCGTTGAGTACGATGGCCATGTCGTGACCCGCCGGGCCGGCGATG
                      ____________________________________________________________
consensus             AGAAGAGCGTAGGCTTCGTTGAGTACGATGGCCATGTCGTGACCCGCCGGGCCGGCGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028M18+           TCCGGGTGGCACCGCTTCTGTAAAGCTCTGTAGGCCAGCTTGATCTGCGCCTGATCGGAG
JMSF035P05+           TCCGGGTGGCACCGCTTCTGTAAAGCTCTGTAGGCCAGCTTGATCTGCGCCTGATCGGAG
                      ____________________________________________________________
consensus             TCCGGGTGGCACCGCTTCTGTAAAGCTCTGTAGGCCAGCTTGATCTGCGCCTGATCGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028M18+           GAGCTATCGATGCCCAGAAGATCGTAGAGGTCAAGATCCCCAAGGGATGAAGAAGAAGAA
JMSF035P05+           GAGCTATCGATGCCCAGAAGATCGTAGAGGTCAAGATCCCCAAGGGATGAAGAAGAAGAA
                      ____________________________________________________________
consensus             GAGCTATCGATGCCCAGAAGATCGTAGAGGTCAAGATCCCCAAGGGATGAAGAAGAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028M18+           GACGCAGCAGCTTTGCAGGAGAGTGATTTCCGATTCCATGGATTTGGGAATGGAAATCTT
JMSF035P05+           GACGCAGCAGCTTTGCAGGAGAGTGATTTCCGATTCCATGGATTTGGGAATGGAAATCTT
                      ____________________________________________________________
consensus             GACGCAGCAGCTTTGCAGGAGAGTGATTTCCGATTCCATGGATTTGGGAATGGAAATCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028M18+           TGGAGGTTTTGGGAATGTGGAGGGGAGATTGGGGGTGACGATTACACTGCTCCTCCGTAT
JMSF035P05+           TGGAGG-TTTGGGAATGTGGAGGGGAGATTGGGGGTGACGATTACACTGCTCCTCCGTAT
                      ____________________________________________________________
consensus             TGGAGGTTTTGGGAATGTGGAGGGGAGATTGGGGGTGACGATTACACTGCTCCTCCGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028M18+           GGGAAGAGCTGAAGTTGGTGAATGCATTTGCATTTTGCAGTGAGAAAAGGGAGAAAAG  
JMSF035P05+           GGGAAGAGCTGAAGTTGGTGAATGCATTTGCATTTTGCAGTGAGAAAAGGGAGAAAAGCC
                      ____________________________________________________________
consensus             GGGAAGAGCTGAAGTTGGTGAATGCATTTGCATTTTGCAGTGAGAAAAGGGAGAAAAGCC