Contig 005198:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF035D11-                                                  ATACATTCAGTTCATTTGTA
rJMSF050N10-                                                             TCATTTGTA
                      ____________________________________________________________
consensus                                                     ATACATTCAGTTCATTTGTA
 
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rJMSF035D11-          CACCAAAGCTTGTCGCCCTTCAACTGTAGATGATACAGAAGGGCGGGCGCCGGGCAGGAA
rJMSF050N10-          CACCAAAGCTTGTCGCCCTTCAACTGTAGATGATACAGAAGGGCGGGCGCCGGGCAGGAA
                      ____________________________________________________________
consensus             CACCAAAGCTTGTCGCCCTTCAACTGTAGATGATACAGAAGGGCGGGCGCCGGGCAGGAA
 
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rJMSF035D11-          GCCAGCCCCTCCCTCGACAGGGTATTAATTACAAATTACAGTGCATCTACGACAACAAGC
rJMSF050N10-          GCCAGCCCCTCCCTCGACAGGGTATTAATTACAAATTACAGTGCATCTACGACAACAAGC
                      ____________________________________________________________
consensus             GCCAGCCCCTCCCTCGACAGGGTATTAATTACAAATTACAGTGCATCTACGACAACAAGC
 
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rJMSF035D11-          TCAACTCATCCATAGCTTGTACTACTACTCCCACTCCCGTTCCCATTCCCATTCCTAATT
rJMSF050N10-          TCAACTCATCCATAGCTTGTACTACTACTCCCACTCCCGTTCCCATTCCCATTCCTAATT
                      ____________________________________________________________
consensus             TCAACTCATCCATAGCTTGTACTACTACTCCCACTCCCGTTCCCATTCCCATTCCTAATT
 
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rJMSF035D11-          CAGTTTCATCTTCGGCTTGAATTACTTCGACCTTGGTTTTAAAGCTCTCGGCTTTGTCAC
rJMSF050N10-          CAGTTTCATCTTCGGCTTGAATTACTTCGACCTTGGTTTTAAAGCTCTCGGCTTTGTCAC
                      ____________________________________________________________
consensus             CAGTTTCATCTTCGGCTTGAATTACTTCGACCTTGGTTTTAAAGCTCTCGGCTTTGTCAC
 
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rJMSF035D11-          TTGTGTCGCCTGCAGCTATGCAGTCCTGGAATCTGAAACAACTGATGAGATGGTCATTCG
rJMSF050N10-          TTGTGTCGCCTGCAGCTATGCAGTCCTGGAATCTGAAACAACTGATGAGATGGTCATTCG
                      ____________________________________________________________
consensus             TTGTGTCGCCTGCAGCTATGCAGTCCTGGAATCTGAAACAACTGATGAGATGGTCATTCG
 
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rJMSF035D11-          AGATTCCAGCAGCTTGCATGAATGAGTATACAACGGTGGGTCCAATTCCTCGGAAACCTC
rJMSF050N10-          AGATTCCAGCAGCTTGCATGAATGAGTATACAACGGTGGGTCCAATTCCTCGGAAACCTC
                      ____________________________________________________________
consensus             AGATTCCAGCAGCTTGCATGAATGAGTATACAACGGTGGGTCCAATTCCTCGGAAACCTC
 
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rJMSF035D11-          TTCTAACTAGATCTTTGCTTATCGTTTCAGCTTTTGATGTCTTGATTGGAACCTGTCTTG
rJMSF050N10-          TTCTAACTAGATCTTTGCTTATCGTTTCAGCTTTTGATGTCTTGATTGGAACCTGTCTTG
                      ____________________________________________________________
consensus             TTCTAACTAGATCTTTGCTTATCGTTTCAGCTTTTGATGTCTTGATTGGAACCTGTCTTG
 
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rJMSF035D11-          GGTAACGGAAATTACCAACTATAGGCTTGTTGTTTACGAAACCCCATATGTACTTGTCAA
rJMSF050N10-          GGTAACGGAAATTACCAACTATAGGCTTGTTGTTTACGAAACCCCATATGTACTTGTCAA
                      ____________________________________________________________
consensus             GGTAACGGAAATTACCAACTATAGGCTTGTTGTTTACGAAACCCCATATGTACTTGTCAA
 
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rJMSF035D11-          ACGACCCAATCTCATCAACTATCCTGCATATCTGGCGTGCATTTTCAATAATTGCTCGCA
rJMSF050N10-          ACGACCCAATCTCATCAACTATCCTGCATATCTGGCGTGCATTTTCAATAATTGCTCGCA
                      ____________________________________________________________
consensus             ACGACCCAATCTCATCAACTATCCTGCATATCTGGCGTGCATTTTCAATAATTGCTCGCA
 
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rJMSF035D11-          GCTTCAACTCTGACAGGAGAGAGCTGGCAGGACTTCCTTGCATCAATACCTTCTTATCAT
rJMSF050N10-          GCTTCAACTCTGACAGGAGAGAGCTGGCAGGACTTCCTTGCATCAATACCTTCTTATCAT
JMFS167H05+                                                                    CAT
                      ____________________________________________________________
consensus             GCTTCAACTCTGACAGGAGAGAGCTGGCAGGACTTCCTTGCATCAATACCTTCTTATCAT
 
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rJMSF035D11-          TCAGTTTTGAGACAGCAACAGGATCAAAATTTTGAAACACTTCTCGGAAGGTTTGCCTTC
rJMSF050N10-          TCAGTTTTGAGACAGCAACAGGATCAAAATTTTGAAACACTTCTCGGAAGGTTTGCCTTC
JMFS167H05+           TCAGTTTTGAGACAGCAACAGGATCAAAATTNTGAAACACTTCTCGGAAGGTTTGCCTTC
                      ____________________________________________________________
consensus             TCAGTTTTGAGACAGCAACAGGATCAAAATTTTGAAACACTTCTCGGAAGGTTTGCCTTC
 
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rJMSF035D11-          TGCTGAGAATGGCTGGCCATGTAAGTTCAGCTAATGCAGTGCACAANCTAAGTAATTCGA
rJMSF050N10-          TGCTGAGAATGGCTGGCCATGTAAGTTCAGCTAATGCAGTGCACAAACTAAGTAATTCGA
JMFS167H05+           TGCTGAGAATGGCTGGCCATGTAAGTTCAGCTAATGCAGTGCACAAACTAAGTAATTCGA
                      ____________________________________________________________
consensus             TGCTGAGAATGGCTGGCCATGTAAGTTCAGCTAATGCAGTGCACAAACTAAGTAATTCGA
 
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rJMSF035D11-          AAAGCTTTCTATCATCATGGAC                                      
rJMSF050N10-          AAAGCTTTCTATCATCATGGACAGGAACTCCCC                           
JMFS167H05+           AAAGCTTTCTATCATCATGGACAGGAACTCCCCATTCCTCGTCATGGAAAGCAGCATATA
                      ____________________________________________________________
consensus             AAAGCTTTCTATCATCATGGACAGGAACTCCCCATTCCTCGTCATGGAAAGCAGCATATA
 
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JMFS167H05+           ACGGATCAGTATTAGCAGTCACCCAAGCACACCTTTTCTTCAGCACAGAGACATCATCCG
                      ____________________________________________________________
consensus             ACGGATCAGTATTAGCAGTCACCCAAGCACACCTTTTCTTCAGCACAGAGACATCATCCG
 
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JMFS167H05+           AACTCACAGACAAGCTTTCAACTTCACTTGCAAGTTTCTCGATGACCTTCTCCGTTTTGG
JMSF050N10+                                                                      G
JMSF035D11+                                                                      G
                      ____________________________________________________________
consensus             AACTCACAGACAAGCTTTCAACTTCACTTGCAAGTTTCTCGATGACCTTCTCCGTTTTGG
 
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JMFS167H05+           GGCTGCATTGCTTCCTCCTAGCCGGTGTAGAGGTCATGCTCCGTCTGATAATTCTCCCCG
JMSF050N10+           GGCTGCATTGCTTCNTCCTAGCCGGTGTAGAGGTCATGCTCCGTCTGATAATTCTCCTCG
JMSF035D11+           GGCTGCATTGCTTCCTCCTAGCCGGTGTAGAGGTCATGCTCCGTCTGATAATTCTCCTCG
                      ____________________________________________________________
consensus             GGCTGCATTGCTTCCTCCTAGCCGGTGTAGAGGTCATGCTCCGTCTGATAATTCTCCTCG
 
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JMFS167H05+           TGGACGCCCGGCTCTGAGAAGAGTCAGTCGACGCATCGGAGGAGCACGAGGCGTTGAGCG
JMSF050N10+           TGGACGCCCGGCTCTGAGAAGAGTCAGTCGACGCATCGGAGGAGCACGAGGCGTTGAGCG
JMSF035D11+           TGGACGCCCGGCTCTGAGAAGAGTCAGTCGACGCATCGGAGGAGCACGAGGCGTTGAGCG
                      ____________________________________________________________
consensus             TGGACGCCCGGCTCTGAGAAGAGTCAGTCGACGCATCGGAGGAGCACGAGGCGTTGAGCG
 
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JMFS167H05+           ACAAGTTGGACCTCATCAAAAAGGACCTCTGGTCCTGCTGCTTCCGCAGAATTGAACCCA
JMSF050N10+           ACAAGTTGGACCTCATCAAAAAGGACCTCTGGTCCTGCTGCTTCCGCAGAATTGAACCCA
JMSF035D11+           ACAAGTTGGACCTCATCAAAAAGGACCTCTGGTCCTGCTGCTTCCGCAGAATTGAACCCA
                      ____________________________________________________________
consensus             ACAAGTTGGACCTCATCAAAAAGGACCTCTGGTCCTGCTGCTTCCGCAGAATTGAACCCA
 
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JMFS167H05+           CACTGCCGCATTTCTTCAATGCCGATACCGGAGACCGCGATTTGGGCGGCTGATCAGCCA
JMSF050N10+           CACTGCCGCATTTCTTCAATGCCGATACCGGAGACCGCGATTTGGGCGGCTGATCAGCCA
JMSF035D11+           CACTGCCGCATTTCTTCAATGCCGATACCGGAGACCGCGATTTGGGCGGCTGATCAGCCA
                      ____________________________________________________________
consensus             CACTGCCGCATTTCTTCAATGCCGATACCGGAGACCGCGATTTGGGCGGCTGATCAGCCA
 
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JMFS167H05+           CCGCCTCCGACATTGCCTGGAATCTCTTGCAGTCACTCTCTCGAGGCTTCTCCACCTTGT
JMSF050N10+           CCGCCTCCGACATTGCCTGGAATCTCTTGCAGTCACTCTCTCGAGGCTTCTCCACCTTGT
JMSF035D11+           CCGCCTCCGACATTGCCTGGAATCTCTTGCAGTCACTCTCTCGAGGCTTCTCCACCTTGT
                      ____________________________________________________________
consensus             CCGCCTCCGACATTGCCTGGAATCTCTTGCAGTCACTCTCTCGAGGCTTCTCCACCTTGT
 
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JMFS167H05+           TACTCTTCAA                                                  
JMSF050N10+           TACTCTTCAACTTCTCAGCGGGTTTGCGCAGTTCGGCCGATCTCGCCTTATTTCCAGCCG
JMSF035D11+           TACTCTTCAACTTCTCAGCGGGTTTGCGCAGTTCGGCCGATCTCGCCTTATTTCCAGCCG
                      ____________________________________________________________
consensus             TACTCTTCAACTTCTCAGCGGGTTTGCGCAGTTCGGCCGATCTCGCCTTATTTCCAGCCG
 
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JMSF050N10+           GTCCGAGTACGGGTCGGATCTCCGACTCGGCATTGTCCATCGATTTCACGCGGGGGACCG
JMSF035D11+           GTCCGAGTACGGGTCGGATCTCCGACTCGGCATTGTCCATCGATTTCACGCGGGGGACCG
                      ____________________________________________________________
consensus             GTCCGAGTACGGGTCGGATCTCCGACTCGGCATTGTCCATCGATTTCACGCGGGGGACCG
 
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JMSF050N10+           GATATTGCGTGAATTGGACCCTCACAGTCGGATATTGGCGAAACTAGGGTTTTAGGGTGA
JMSF035D11+           GATATTGCGTGAATTGGACCCTCACAGTCGGATATTGGCGAAACTAGGGTTTTAGGGTGA
                      ____________________________________________________________
consensus             GATATTGCGTGAATTGGACCCTCACAGTCGGATATTGGCGAAACTAGGGTTTTAGGGTGA
 
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JMSF050N10+           GAAGAGAGGTTGAAAAAGATGAAATGGTGGTGTATCCGGTTCCCAGGGTGGGAATGCAGA
JMSF035D11+           GAAGAGAGGTTGAAAAAGATGAAATGGTGGTGTATCCGGTTCCCAGGGTGGGAATGCAGA
                      ____________________________________________________________
consensus             GAAGAGAGGTTGAAAAAGATGAAATGGTGGTGTATCCGGTTCCCAGGGTGGGAATGCAGA
 
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JMSF050N10+           GAAATGAAACCCTAGAGAGAGCAGAGTAGAAGGTACATTGATGACGATGAAGCCCCTGAG
JMSF035D11+           GAAATGAAACCCTAGAGAGAGCAGAGTAGAAGGTACATTGATGACGATGAAGCCCCTGAG
                      ____________________________________________________________
consensus             GAAATGAAACCCTAGAGAGAGCAGAGTAGAAGGTACATTGATGACGATGAAGCCCCTGAG
 
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JMSF050N10+           GGTAGTAGAAGTAGAAGTAGAAGTAGGAGTGGGTCTGAGAAAATTGAAGCTGTTCGTTCC
JMSF035D11+           GGTAGTAGAAGTAGAAGTAGAAGTAGGAGTGGGTCTGAGAAAATTGAAGCTGTTCGTTCC
                      ____________________________________________________________
consensus             GGTAGTAGAAGTAGAAGTAGAAGTAGGAGTGGGTCTGAGAAAATTGAAGCTGTTCGTTCC