Contig 005193:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034G17Sequence583005193 (6)651005193 (6)
JMFF037A18Sequence603005193 (6)633005193 (6)
JMSF034M08Sequence616005193 (6)ref|XP_010666994.1|49.7PREDICTED: uncharacterized protein LOC104884099 [Beta vulgaris subsp. vulgaris]578005193 (6)ref|XP_010666994.1|49.7PREDICTED: uncharacterized protein LOC104884099 [Beta vulgaris subsp. vulgaris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037A18-                ATATTTAATCTTACCGGATCTCTCTCTATCTTTAACGTACGTTGGCCGAAGAACC
rJMFF037A18+               ATATTTAATCTTACCGGATCTCTCTCTATCTTTAACGTACGTTGNCCGAAGAACC
JMFF034G17-                                                    GTACGTTGGCCGAAGAACC
rJMFF034G17+                                                   GTACGTTGGCCGAAGAACC
                      ____________________________________________________________
consensus                  ATATTTAATCTTACCGGATCTCTCTCTATCTTTAACGTACGTTGGCCGAAGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037A18-           TTTCCCACGCCGTTCGATTCGTGTTCTTCGTCAACGGCGGTGGATGATGGTCGTCGGTGG
rJMFF037A18+          TTTCCCACGCCGTTCGATTCGTGTTCTTCGTCAACGGCGGTGGATGATGGTCGTCGGTGG
JMFF034G17-           TTTCCCACGCCGTTCGATTCGTGTTCTTCGTCAACGGCGGTGGATGATGGTCGTCGGTGG
rJMFF034G17+          TTTCCCACGCCGTTCGATTCGTGTTCTTCGTCAACGGCGGTGGATGATGGTCGTCGGTGG
                      ____________________________________________________________
consensus             TTTCCCACGCCGTTCGATTCGTGTTCTTCGTCAACGGCGGTGGATGATGGTCGTCGGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037A18-           GGCTGAAGTGGAGCCAAGCGACGGGAACCACCAACTCGGGTTCATGTTCCCAATTCTACG
rJMFF037A18+          GNCTGAAGTGGAGCCAAGCGACGGGAACCACCAANTCGGGTTCATGTTCCCAATTCTACG
JMFF034G17-           GGCTGAAGTGGAGCCAAGCGACGGGAACCACCAACTCGGGTTCATGTTCCCAATTCTACG
rJMFF034G17+          GGCTGAAGTGGAGCCAAGCGACGGGAACCACCAACTCGGGTTCATGTTCCCAATTCTACG
                      ____________________________________________________________
consensus             GGCTGAAGTGGAGCCAAGCGACGGGAACCACCAACTCGGGTTCATGTTCCCAATTCTACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037A18-           ATTAGGCCACTACTTTCTCCTTTGATTTGATTTTCGCAATGGCTGAAGGATATGCTGGCA
rJMFF037A18+          ATTAGGCCACTACTTTCTCCTTTGATTTGATTTTCGCAATGGCTGAAGGATATGNTGGCA
JMFF034G17-           ATTAGGCCACTACTTTCTCCTTTGATTTGATTTTCGCAATGGCTGAAGGATATGCTGGCA
rJMFF034G17+          ATTAGGCCACTACTTTCTCCTTTGATTTGATTTTCGCAATGGCTGAAGGATATGCTGGCA
rJMSF034M08+                                                      GAAGGATATGCTGGCA
JMSF034M08-                                                       GAAGGATATGCTGGCA
                      ____________________________________________________________
consensus             ATTAGGCCACTACTTTCTCCTTTGATTTGATTTTCGCAATGGCTGAAGGATATGCTGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037A18-           GAATTCTTCAAAACTTTGGACCCTGCGAAGTCTACAATCTGTGTAGGTTTGGATGCCAAG
rJMFF037A18+          GAATTCTTCAAAACTTTGGACCCTGCGAAGTCTACAATCTGTGTAGGTTTGGATGCCAAG
JMFF034G17-           GAATTCTTCAAAACTTTGGACCCTGCGAAGTCTACAATCTGTGTAGGTTTGGATGCCAAG
rJMFF034G17+          GAATTCTTCAAAACTTTGGACCCTGCGAAGTCTACAATCTGTGTAGGTTTGGATGCCAAG
rJMSF034M08+          GAATTCTTCAAAACTTTGGACCCTGCGAAGTCTACAATCTGTGTAGGTTTGGATGCCAAG
JMSF034M08-           GAATTCTTCAAAACTTTGGACCCTGCGAAGTCTACAATCTGTGTAGGTTTGGATGCCAAG
                      ____________________________________________________________
consensus             GAATTCTTCAAAACTTTGGACCCTGCGAAGTCTACAATCTGTGTAGGTTTGGATGCCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037A18-           CGCATGCAAATGGCTTGGCGCGATTCGAAGAATAAGATTGACTGTGGAGTTTTTGTCATG
rJMFF037A18+          CGCATGCAAATGGCTTGGCGCGATTCGAAGAATAAGATTGACTGTGGAGTTTTTGTCATG
JMFF034G17-           CGCATGCAAATGGCTTGGCGCGATTCGAAGAATAAGATTGACTGTGGAGTTTTTGTCATG
rJMFF034G17+          CGCATGCAAATGGCTTGGCGCGATTCGAAGAATAAGATTGACTGTGGAGTTTTTGTCATG
rJMSF034M08+          CGCATGCAAATGGCTTGGCGCGATTCGAAGAATAAGATTGACTGTGGAGTTTTTGTCATG
JMSF034M08-           CGCATGCAAATGGCTTGGCGCGATTCGAAGAATAAGATTGACTGTGGAGTTTTTGTCATG
                      ____________________________________________________________
consensus             CGCATGCAAATGGCTTGGCGCGATTCGAAGAATAAGATTGACTGTGGAGTTTTTGTCATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037A18-           CGTCCTATGGAGACGTAATAAGTAGGCCAAAGGGTGTCCAAATGGGAGTGTGGCCTTACC
rJMFF037A18+          CGTCCTATGGAGACGTAATAAGTAGGCCAAAGGGTGTCCAAATGGGAGTGTGGCCTTACC
JMFF034G17-           CGTCCTATGGAGACGTAATAAGTAGGCCAAAGGGTGTCCAAATGGGAGTGTGGCCTTACC
rJMFF034G17+          CGTCCTATGGAGACGTAATAAGTAGGCCAAAGGGTGTCCAAATGGGAGTGTGGCCTTACC
rJMSF034M08+          CGTCCTATGGAGACGTAATAAGTAGGCCAAAGGGTGTCCAAATGGGAGTGTGGCCTTACC
JMSF034M08-           CGTCCTATGGAGACGTAATAAGTAGGCCAAAGGGTGTCCAAATGGGAGTGTGGCCTTACC
                      ____________________________________________________________
consensus             CGTCCTATGGAGACGTAATAAGTAGGCCAAAGGGTGTCCAAATGGGAGTGTGGCCTTACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037A18-           AAAGGAGACACTACTAAGCTCCACCAGCTCAGGTTACATTACATGAAGGAAATTGCGGCC
rJMFF037A18+          AAAGGAGACACTACTAAGCTCCACCAGCTCAGGTTACATTACATGAAGGAAATTGCGGCC
JMFF034G17-           AAAGGAGACACTACTAAGCTCCACCAGCTCAGGTTACATTACATGAAGGAAATTGCGGCC
rJMFF034G17+          AAAGGAGACACTACTAAGCTCCACCAGCTCAGGTTACATTACATGAAGGAAATTGCGGCC
rJMSF034M08+          AAAGGAGACACTACTAAGCTCCACCAGCTCAGGTTACATTACATGAAGGAAATTGCGGCC
JMSF034M08-           AAAGGAGACACTACTAAGCTCCACCAGCTCAGGTTACATTACATGAAGGAAATTGCGGCC
                      ____________________________________________________________
consensus             AAAGGAGACACTACTAAGCTCCACCAGCTCAGGTTACATTACATGAAGGAAATTGCGGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037A18-           TCCGAATTCAATATGAATAGAAGTAGGAACCTCAGACTGGTTTATCAGTTTATTTCTACT
rJMFF037A18+          TCCGAATTCAATATGAATAGAAGTAGGAACCTCAGACTGGTTTATCAGTTTATTTCTACT
JMFF034G17-           TCCGAATTCAATATGAATAGAAGTAGGAACCTCAGACTGGTTTATCAGTTTATTTCTACT
rJMFF034G17+          TCCGAATTCAATATGAATAGAAGTAGGAACCTCAGACTGGTTTATCAGTTTATTTCTACT
rJMSF034M08+          TCCGAATTCAATATGAATAGAAGTAGGAACCTCAGACTGGTTTATCAGTTTATTTCTACT
JMSF034M08-           TCCGAATTCAATATGAATAGAAGTAGGAACCTCAGACTGGTTTATCAGTTTATTTCTACT
                      ____________________________________________________________
consensus             TCCGAATTCAATATGAATAGAAGTAGGAACCTCAGACTGGTTTATCAGTTTATTTCTACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037A18-           GTTTAGAGTACCATTGATTACTATGACAGTGTAACTGTACTGTCACCGGGTTTGCCTATT
rJMFF037A18+          GTTTAGAGTACCANTGATTACTATGACAGTGTAACTGTACTGTCACCGGGTTTGCCTATT
JMFF034G17-           GTTTAGAGTACCATTGATTACTATGACAGTGTAACTGTACTGTCACCGGGTTTGCCTATT
rJMFF034G17+          GTTTAGAGTACCATTGATTACTATGACAGTGTAACTGTACTGTCACCGGGTTTGCCTATT
rJMSF034M08+          GTTTAGAGTACCATTGATTACTATGACAGTGTAACTGTACTGTCACCGGGTTTGCCTATT
JMSF034M08-           GTTTAGAGTACCATTGATTACTATGACAGTGTAACTGTACTGTCACCGGGTTTGCCTATT
                      ____________________________________________________________
consensus             GTTTAGAGTACCATTGATTACTATGACAGTGTAACTGTACTGTCACCGGGTTTGCCTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037A18-           TGTTGGAC                                                    
rJMFF037A18+          TGTTGGACTAGATTGTTTA                                         
JMFF034G17-           TGTTGGACTANATTGTTTACTTAT                                    
rJMFF034G17+          TGTTGGACTAGATTGTTT-ACTTATAGATGGTTAGAATAGCCTTCCTTGTA-CTGTATCT
rJMSF034M08+          TGTTGGACTAGATTGTTTAACTTATAGATGGTTAGAATAGCCTTCCTTGTACCTGTATCT
JMSF034M08-           TGTTGGACTAGATTGTTT-ACTTATAGATGGTTAGAATAGCCTTCCTTGTA-CTGTATCT
                      ____________________________________________________________
consensus             TGTTGGACTAGATTGTTTAACTTATAGATGGTTAGAATAGCCTTCCTTGTA-CTGTATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034G17+          ATTCAGTTTTGGGATGCCGTATTTATTACTCTAT                          
rJMSF034M08+          ATTCAGTTTTGGGATGCCGT                                        
JMSF034M08-           ATTCAGTTTTGGGATGCCGTATTTATTACTCTATGATATTTCCAATTATTTTTGTAAAAA
                      ____________________________________________________________
consensus             ATTCAGTTTTGGGATGCCGTATTTATTACTCTATGATATTTCCAATTATTTTTGTAAAAA